ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (... 62 5e-10
2BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (... 62 7e-10
3BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 61 1e-09
4BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 59 5e-09
5BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.... 54 1e-07
6TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH 28 8.6
7SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter ... 28 8.6

>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 731

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 24/41 (58%), Positives = 37/41 (90%)
 Frame = +2

Query: 293 TSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTHDMWPVL 415
           ++A+ +V+YDH+A++I+G +R+L+SGSIHYPRST +MWP L
Sbjct: 20  SAASASVSYDHKAIIINGQKRILISGSIHYPRSTPEMWPDL 60



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>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +2

Query: 290 GTSAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTHDMWPVL 415
           G++ +T V++D RA+ IDG RR+L+SGSIHYPRST DMWP L
Sbjct: 20  GSANSTIVSHDERAITIDGQRRILLSGSIHYPRSTSDMWPDL 61



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 24/40 (60%), Positives = 34/40 (85%)
 Frame = +2

Query: 296 SAATNVTYDHRALVIDGVRRVLVSGSIHYPRSTHDMWPVL 415
           +   +VTYDH++++I+G RR+L+SGSIHYPRST +MWP L
Sbjct: 22  AVTASVTYDHKSVIINGQRRILISGSIHYPRSTPEMWPDL 61



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>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 22/36 (61%), Positives = 33/36 (91%)
 Frame = +2

Query: 308 NVTYDHRALVIDGVRRVLVSGSIHYPRSTHDMWPVL 415
           +V+YDH+A++++G R++L+SGSIHYPRST +MWP L
Sbjct: 23  SVSYDHKAIIVNGQRKILISGSIHYPRSTPEMWPDL 58



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>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +2

Query: 308 NVTYDHRALVIDGVRRVLVSGSIHYPRSTHDMWP 409
           NV YD+RA+ I+  RR+L+SGSIHYPRST +MWP
Sbjct: 30  NVWYDYRAIKINDQRRILLSGSIHYPRSTPEMWP 63



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>TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH|
          Length = 1049

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 215 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 129
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145



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>SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter srpB|
          Length = 1049

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 215 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 129
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,113,369
Number of Sequences: 219361
Number of extensions: 371707
Number of successful extensions: 1334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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