ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03g04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 170 bits (86), Expect = 2e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 308 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctcc 367 |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 396 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 455 Query: 368 ggctccatccactacccgcggagcacccacgacatgtggccggtgctgat 417 || ||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 456 gggtccatccactacccgcggagcacccccgacatgtggccggggctgat 505
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 1e-31 Identities = 88/93 (94%) Strand = Plus / Minus Query: 308 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctcc 367 |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 8172540 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8172481 Query: 368 ggctccatccactacccgcggagcacccacgac 400 || ||||||||||||||||||||||||| |||| Sbjct: 8172480 gggtccatccactacccgcggagcacccccgac 8172448
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 1e-31 Identities = 88/93 (94%) Strand = Plus / Minus Query: 308 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctcc 367 |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 8170375 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8170316 Query: 368 ggctccatccactacccgcggagcacccacgac 400 || ||||||||||||||||||||||||| |||| Sbjct: 8170315 gggtccatccactacccgcggagcacccccgac 8170283
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 145 bits (73), Expect = 1e-31 Identities = 88/93 (94%) Strand = Plus / Minus Query: 308 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctcc 367 |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 103970 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 103911 Query: 368 ggctccatccactacccgcggagcacccacgac 400 || ||||||||||||||||||||||||| |||| Sbjct: 103910 gggtccatccactacccgcggagcacccccgac 103878
>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full insert sequence Length = 3078 Score = 129 bits (65), Expect = 8e-27 Identities = 86/93 (92%) Strand = Plus / Plus Query: 308 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctcc 367 ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 2428 aacgtgacgtacgaccaccgcgctgtggtcatcgacggcgtgcgacgcgtgctcgtctcc 2487 Query: 368 ggctccatccactacccgcggagcacccacgac 400 || ||||||||||||||||||| ||||| |||| Sbjct: 2488 gggtccatccactacccgcggaacacccccgac 2520
>ref|XM_464677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2190 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 310 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccgg 369 |||| ||||||||| ||| |||| |||||| ||||| ||||| | ||| ||||||| Sbjct: 111 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 170 Query: 370 ctccatccactacccgcggagcacccacgacatgtggccggtgctgat 417 |||||||||||||||||||||||||| ||| |||||||||| |||||| Sbjct: 171 ctccatccactacccgcggagcacccccgagatgtggccggggctgat 218
>ref|NM_192994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2484 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcacccacgacatgtggccgg 410 ||||||||||||||||||||||| ||||||||| ||| |||||||||| Sbjct: 128 tctccggctccatccactacccgaggagcacccccgagatgtggccgg 175
>dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full insert sequence Length = 3186 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcacccacgacatgtggccgg 410 ||||||||||||||||||||||| ||||||||| ||| |||||||||| Sbjct: 241 tctccggctccatccactacccgaggagcacccccgagatgtggccgg 288
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 310 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccgg 369 |||| ||||||||| ||| |||| |||||| ||||| ||||| | ||| ||||||| Sbjct: 6659614 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 6659555 Query: 370 ctccatccactacccgcggagcaccc 395 |||||||||||||||||||||||||| Sbjct: 6659554 ctccatccactacccgcggagcaccc 6659529
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 310 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccgg 369 |||| ||||||||| ||| |||| |||||| ||||| ||||| | ||| ||||||| Sbjct: 93989 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 93930 Query: 370 ctccatccactacccgcggagcaccc 395 |||||||||||||||||||||||||| Sbjct: 93929 ctccatccactacccgcggagcaccc 93904
>dbj|AK102756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107B05, full insert sequence Length = 2847 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcacccacgacatgtggccgg 410 |||||||||||||||||||||| || ||||||| ||| |||||||||| Sbjct: 463 tctccggctccatccactaccctcgcagcacccccgagatgtggccgg 510
>ref|XM_483667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2877 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 ||||||||||||||||||||||||||||| Sbjct: 210 tctccggctccatccactacccgcggagc 238
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 ||||||||||||||||||||||||||||| Sbjct: 58634 tctccggctccatccactacccgcggagc 58662
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 ||||||||||||||||||||||||||||| Sbjct: 27553597 tctccggctccatccactacccgcggagc 27553625
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcaccc 395 ||||||||||||||||||||||| ||||||||| Sbjct: 22462950 tctccggctccatccactacccgaggagcaccc 22462982
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcaccc 395 ||||||||||||||||||||||| ||||||||| Sbjct: 87088 tctccggctccatccactacccgaggagcaccc 87120
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcaccc 395 ||||||||||||||||||||||| ||||||||| Sbjct: 160220 tctccggctccatccactacccgaggagcaccc 160252
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 ||||||||||||||||||||||||||||| Sbjct: 35887 tctccggctccatccactacccgcggagc 35915
>dbj|AK069066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007A22, full insert sequence Length = 2877 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 ||||||||||||||||||||||||||||| Sbjct: 210 tctccggctccatccactacccgcggagc 238
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 307 caacgtgacgtacgaccaccgcgcgctggtcatcg 341 ||||||||||||||||||||||||| || |||||| Sbjct: 13826415 caacgtgacgtacgaccaccgcgcggtgctcatcg 13826381
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence Length = 3036 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 307 caacgtgacgtacgaccaccgcgcgctggtcatcg 341 ||||||||||||||||||||||||| || |||||| Sbjct: 280 caacgtgacgtacgaccaccgcgcggtgctcatcg 314
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 307 caacgtgacgtacgaccaccgcgcgctggtcatcg 341 ||||||||||||||||||||||||| || |||||| Sbjct: 13780695 caacgtgacgtacgaccaccgcgcggtgctcatcg 13780661
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 307 caacgtgacgtacgaccaccgcgcgctggtcatcg 341 ||||||||||||||||||||||||| || |||||| Sbjct: 142074 caacgtgacgtacgaccaccgcgcggtgctcatcg 142040
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcaccc 395 |||||||||||||||||||||| || ||||||| Sbjct: 21898027 tctccggctccatccactaccctcgcagcaccc 21898059
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcaccc 395 |||||||||||||||||||||| || ||||||| Sbjct: 120512 tctccggctccatccactaccctcgcagcaccc 120544
>dbj|AB190367.1| Pyrus pyrifolia PpGAL6 mRNA for beta-D-galactosidase, complete cds Length = 3000 Score = 48.1 bits (24), Expect = 0.023 Identities = 81/100 (81%) Strand = Plus / Plus Query: 311 gtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccggc 370 ||||||||||||||| | |||||||| || ||||| |||| |||| | || || ||| Sbjct: 392 gtgacgtacgaccacagagcgctggtgattgacgggaagcgcagggttttggtgtctggc 451 Query: 371 tccatccactacccgcggagcacccacgacatgtggccgg 410 ||||| ||||| || || ||||||| ||| |||||||||| Sbjct: 452 tccattcactatcctcgcagcacccccgagatgtggccgg 491
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 250 cgcggcggcggccctgctgctcgc 273 |||||||||||||||||||||||| Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 cgcgcgctggtcatcgacggcg 347 |||||||||||||||||||||| Sbjct: 4040440 cgcgcgctggtcatcgacggcg 4040419
>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like 2B isoform 2 (LOC485071), mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 263 ctgctgctcgcgctgctctgcctggc 288 ||||||||||| |||||||||||||| Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 213 gcgacaaagcaatggcggccgtcggcaggc 242 ||||||| ||||||||||||| |||||||| Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 251 gcggcggcggccctgctgctcgcgctgctc 280 |||||||||| | ||||||||||||||||| Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase (OSJNBa0035H01.10), mRNA Length = 3384 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccagctgctgctcgtcgcc 108 ||||||||||||||||||||| Sbjct: 1509 ctccagctgctgctcgtcgcc 1489
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 ggcggccctgctgctcgcgct 276 ||||||||||||||||||||| Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus (LOC475144), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 cctgctgctcgcgctgctctg 282 ||||||||||||||||||||| Sbjct: 60 cctgctgctcgcgctgctctg 80
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccagctgctgctcgtcgcc 108 ||||||||||||||||||||| Sbjct: 59300 ctccagctgctgctcgtcgcc 59280
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cggccctgctgctcgcgctgctctg 282 ||||| ||||||||||||||||||| Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 gcggcggccctgctgctcgcg 274 ||||||||||||||||||||| Sbjct: 66011 gcggcggccctgctgctcgcg 65991
>emb|AJ717742.1| Triticum monococcum gyl-trans gene (partial), tRNA-Pro gene and betaGAL gene, clone 65B32 Length = 10571 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcg 387 |||||||| |||||||||||||||| Sbjct: 2870 tctccggcgccatccactacccgcg 2894
>emb|AJ717740.1| Hordeum vulgare betaGAL1 gene, tRNA-Pro pseudogene, ORF_1 pseudogene and tnp2-like1 gene (partial) Length = 10640 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagcacccacgacatgtggc 407 |||| ||| |||||||||||||||| ||| ||| ||| ||||||| Sbjct: 2159 tctcgggcgccatccactacccgcgcagcccccccgatatgtggc 2203
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 tgccgagcgcggcggcggccc 263 ||||||||||||||||||||| Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggggacgtcggcggcgacc 307 |||||||||||||||||||| Sbjct: 5397202 cggggacgtcggcggcgacc 5397183
>tpg|BK000089.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose synthase-like D1 gene, complete cds Length = 4188 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccagctgctgctcgtcgcc 108 ||||||||||||||||||||| Sbjct: 1778 ctccagctgctgctcgtcgcc 1758
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccagctgctgctcgtcgcc 108 ||||||||||||||||||||| Sbjct: 22543582 ctccagctgctgctcgtcgcc 22543562
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 |||||||| ||||||||||||| |||||| Sbjct: 20929067 tctccggcgccatccactacccacggagc 20929095
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 |||||||| ||||||||||||| |||||| Sbjct: 21156 tctccggcgccatccactacccacggagc 21184
>dbj|AK119414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F12, full insert sequence Length = 2998 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 363 tctccggctccatccactacccgcggagc 391 |||||||| ||||||||||||| |||||| Sbjct: 268 tctccggcgccatccactacccacggagc 296
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccagctgctgctcgtcgcc 108 ||||||||||||||||||||| Sbjct: 22556050 ctccagctgctgctcgtcgcc 22556030
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gcggcggcggccctgctgct 270 |||||||||||||||||||| Sbjct: 556863 gcggcggcggccctgctgct 556882
>gb|AC122309.5| Mus musculus BAC clone RP23-293G2 from chromosome 14, complete sequence Length = 208443 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 131970 ctcgtctccggctccatcca 131989
>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration inhibitory factor (MIF) variant 1-like mRNA, complete sequence Length = 1030 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 agcgcggcggcggccctgctgctc 271 |||||||||||||||| ||||||| Sbjct: 29 agcgcggcggcggccccgctgctc 52
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gccgagcgcggcggcggccc 263 |||||||||||||||||||| Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcaggctgccgagcgcggcg 256 |||||||||||||||||||| Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gccctgctgctcgcgctgct 279 |||||||||||||||||||| Sbjct: 501 gccctgctgctcgcgctgct 482
>ref|NM_193207.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2484 Score = 40.1 bits (20), Expect = 5.6 Identities = 62/76 (81%) Strand = Plus / Plus Query: 335 gtcatcgacggcgtgcgccgggtgctcgtctccggctccatccactacccgcggagcacc 394 |||||||||||| ||||||| | || |||| || |||||||| || || |||||||| Sbjct: 115 gtcatcgacggccagcgccggatcatcctctctggttccatccattatccccggagcact 174 Query: 395 cacgacatgtggccgg 410 | ||| |||||||||| Sbjct: 175 cccgagatgtggccgg 190
>gb|BC078644.1| Mus musculus dachshund 1 (Drosophila), mRNA (cDNA clone IMAGE:6513381), partial cds Length = 4829 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 101 ctcgtctccggctccatcca 120
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tcatcgacggcgtgcgccgg 355 |||||||||||||||||||| Sbjct: 3568980 tcatcgacggcgtgcgccgg 3568961
>ref|NM_007826.2| Mus musculus dachshund 1 (Drosophila) (Dach1), transcript variant 1, mRNA Length = 5225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>ref|NM_001038610.1| Mus musculus dachshund 1 (Drosophila) (Dach1), transcript variant 2, mRNA Length = 5069 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>gb|BC059934.1| Mus musculus cDNA clone IMAGE:6826750 Length = 5088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cggccctgctgctcgcgctg 277 |||||||||||||||||||| Sbjct: 2534797 cggccctgctgctcgcgctg 2534816
>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence Length = 187495 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ggccctgctgctcgcgctgctctg 282 |||||||||||||| ||||||||| Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ggtcatcgacggcgtgcgcc 353 |||||||||||||||||||| Sbjct: 528503 ggtcatcgacggcgtgcgcc 528484
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cgaccaccgcgcgctggtcatcga 342 ||||||||||||||||||| |||| Sbjct: 247788 cgaccaccgcgcgctggtcgtcga 247811
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ctgccgagcgcggcggcggc 261 |||||||||||||||||||| Sbjct: 590 ctgccgagcgcggcggcggc 571
>dbj|AB086425.1| Pyrus communis PcGAL3 mRNA for pear beta-galactosidase3, complete cds Length = 3085 Score = 40.1 bits (20), Expect = 5.6 Identities = 44/52 (84%) Strand = Plus / Plus Query: 317 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccg 368 ||||||||||| || || ||||||||||| |||||| |||||||||||| Sbjct: 180 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 231
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggggacgtcggcggcgacc 307 |||||||||||||||||||| Sbjct: 6117 cggggacgtcggcggcgacc 6098
>dbj|AK139060.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730010G10 product:dachshund 1 (Drosophila), full insert sequence Length = 4396 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 568 ctcgtctccggctccatcca 587
>gb|BC052005.1| Mus musculus dachshund 1 (Drosophila), mRNA (cDNA clone IMAGE:6408715), complete cds Length = 2643 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 341 ctcgtctccggctccatcca 360
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase, putative outer membrane protein OprM precursor (toxI), probable RND efflux transporter (toxH), probable RND efflux membrane-fusion protein precursor (toxG), hypothetical protein (toxF), LysR type regulatory protein (toxR), putative ubiquinone/menaquinone biosynthesis methyltransferase (toxA), putative GTP cyclohydrolase II (toxB), WD repeat portein (toxC), hypothetical protein (toxD), putative deaminase (toxE), and putative transposase genes, complete cds Length = 16987 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gcggcggccctgctgctcgc 273 |||||||||||||||||||| Sbjct: 3749 gcggcggccctgctgctcgc 3730
>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144883 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ctgccgagcgcggcggcggc 261 |||||||||||||||||||| Sbjct: 31445 ctgccgagcgcggcggcggc 31426
>dbj|AB190363.1| Pyrus pyrifolia PpGAL2 mRNA for beta-D-galactosidase, complete cds Length = 3079 Score = 40.1 bits (20), Expect = 5.6 Identities = 44/52 (84%) Strand = Plus / Plus Query: 317 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgggtgctcgtctccg 368 ||||||||||| || || ||||||||||| |||||| |||||||||||| Sbjct: 168 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 219
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gcggcggccctgctgctcgc 273 |||||||||||||||||||| Sbjct: 72763 gcggcggccctgctgctcgc 72744
>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ctgccgagcgcggcggcggc 261 |||||||||||||||||||| Sbjct: 212 ctgccgagcgcggcggcggc 193
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tggcggggacgtcggcggcg 304 |||||||||||||||||||| Sbjct: 4413242 tggcggggacgtcggcggcg 4413261
>dbj|AK119447.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D03, full insert sequence Length = 2864 Score = 40.1 bits (20), Expect = 5.6 Identities = 62/76 (81%) Strand = Plus / Plus Query: 335 gtcatcgacggcgtgcgccgggtgctcgtctccggctccatccactacccgcggagcacc 394 |||||||||||| ||||||| | || |||| || |||||||| || || |||||||| Sbjct: 221 gtcatcgacggccagcgccggatcatcctctctggttccatccattatccccggagcact 280 Query: 395 cacgacatgtggccgg 410 | ||| |||||||||| Sbjct: 281 cccgagatgtggccgg 296
>gb|AF129510.1|AF129510 Mus musculus DACH protein (Dach) mRNA, complete cds Length = 2704 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 329 ctcgtctccggctccatcca 348
>gb|AF102547.1|AF102547 Mus musculus dachshund (Dach) mRNA, complete cds Length = 2256 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 tgccgagcgcggcggcggcc 262 |||||||||||||||||||| Sbjct: 749571 tgccgagcgcggcggcggcc 749590
>gb|AF090437.1|AF090437 Mus musculus dachshund variant 2 (Dach) mRNA, complete cds Length = 2100 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>gb|AF090436.1|AF090436 Mus musculus dachshund variant 1 (Dach) mRNA, complete cds Length = 2256 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctcgtctccggctccatcca 378 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gcggcggccctgctgctcgc 273 |||||||||||||||||||| Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gccctgctgctcgcgctgct 279 |||||||||||||||||||| Sbjct: 25565 gccctgctgctcgcgctgct 25584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,676,440 Number of Sequences: 3902068 Number of extensions: 2676440 Number of successful extensions: 56857 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54229 Number of HSP's gapped (non-prelim): 2629 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
