ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
2gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds 98 3e-17
5dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
7emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 44 0.41
8gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome... 42 1.6
9gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
10gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosom... 42 1.6
11gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
12gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
13gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
14gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosom... 40 6.4
15gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.4
16gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
17ref|XM_531633.2| PREDICTED: Canis familiaris similar to CG9410-P... 40 6.4
18gb|AE014311.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 6.4
19emb|AL591847.8| Human DNA sequence from clone RP11-510L10 on chr... 40 6.4
20emb|AL590808.6| Human DNA sequence from clone RP13-483F6 on chro... 40 6.4
21emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, B... 40 6.4
22gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete s... 40 6.4
23emb|AL732293.14| Mouse DNA sequence from clone RP23-360J13 on ch... 40 6.4
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
25dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
27gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, com... 40 6.4
28dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
29dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.4
30dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.4
31emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in... 40 6.4
32gb|L32833.1|HUMZFHPA Homo sapiens zinc finger homeodomain protei... 40 6.4
33gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
34emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.4

>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                         
Query: 276   gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
             |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 34808 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 34749

                                                                         
Query: 336   cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
              || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 34748 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 34689

                                                                         
Query: 396   tttcaccccta---aaagctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
             ||||||  |||   ||| |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 34688 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 34629

                
Query: 453   tgg 455
             |||
Sbjct: 34628 tgg 34626



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>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0007P22, complete sequence
          Length = 148068

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                          
Query: 276    gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
              |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 146326 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 146267

                                                                          
Query: 336    cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
               || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 146266 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 146207

                                                                          
Query: 396    tttcaccccta---aaagctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
              ||||||  |||   ||| |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 146206 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 146147

                 
Query: 453    tgg 455
              |||
Sbjct: 146146 tgg 146144



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                            
Query: 276      gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
                |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 22306490 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 22306549

                                                                            
Query: 336      cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
                 || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 22306550 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 22306609

                                                                            
Query: 396      tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
                ||||||  |||||   | |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 22306610 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 22306669

                   
Query: 453      tgg 455
                |||
Sbjct: 22306670 tgg 22306672



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 63      gtggcggcgcggcggcgcga 82
               ||||||||||||||||||||
Sbjct: 8113952 gtggcggcgcggcggcgcga 8113933



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>gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds
          Length = 2982

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                       
Query: 276 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
           |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 69  gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 128

                                                                       
Query: 336 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
            || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 129 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 188

                                                                       
Query: 396 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
           ||||||  |||||   | |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 189 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 248

              
Query: 453 tgg 455
           |||
Sbjct: 249 tgg 251



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>dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A08, full
           insert sequence
          Length = 3270

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                       
Query: 276 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
           |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 386 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 445

                                                                       
Query: 336 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
            || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 446 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 505

                                                                       
Query: 396 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
           ||||||  |||||   | |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 506 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 565

              
Query: 453 tgg 455
           |||
Sbjct: 566 tgg 568



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 150/183 (81%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                            
Query: 276      gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 335
                |||||| |||||||||| || |||| |  ||||||||  | ||||| ||||||||||  |
Sbjct: 22616401 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 22616460

                                                                            
Query: 336      cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 395
                 || || ||||||||||||||| |||| ||||||||||||||  | || ||  |||||||
Sbjct: 22616461 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 22616520

                                                                            
Query: 396      tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 452
                ||||||  |||||   | |||||||||  |||||||| | ||||||||||||||||||||
Sbjct: 22616521 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 22616580

                   
Query: 453      tgg 455
                |||
Sbjct: 22616581 tgg 22616583



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 63      gtggcggcgcggcggcgcga 82
               ||||||||||||||||||||
Sbjct: 8183662 gtggcggcgcggcggcgcga 8183643



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 88      ttgctgctcggcggcagcggcc 109
               ||||||||||||||||||||||
Sbjct: 2920631 ttgctgctcggcggcagcggcc 2920652



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>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence
          Length = 189253

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 191    tggcttgtggacaagtgtagacctg 215
              ||||| |||||||||||||||||||
Sbjct: 186911 tggctagtggacaagtgtagacctg 186935



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 61      ccgtggcggcgcggcggcgcg 81
               |||||||||||||||||||||
Sbjct: 1943402 ccgtggcggcgcggcggcgcg 1943422



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>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 191    tggcttgtggacaagtgtagacctg 215
              ||||| |||||||||||||||||||
Sbjct: 174542 tggctagtggacaagtgtagacctg 174518



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>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
             complete sequence
          Length = 164064

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    cgtggcggcgcggcggcgcg 81
             ||||||||||||||||||||
Sbjct: 64617 cgtggcggcgcggcggcgcg 64636



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>gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0117L20 map S2137, complete sequence
          Length = 125303

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    gtggcggcgcggcggcgcga 82
             ||||||||||||||||||||
Sbjct: 16254 gtggcggcgcggcggcgcga 16235



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>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
              near S2137, complete sequence
          Length = 197516

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     gtggcggcgcggcggcgcga 82
              ||||||||||||||||||||
Sbjct: 194451 gtggcggcgcggcggcgcga 194432



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>gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosome 8, complete sequence
          Length = 179978

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tgctgctcggcggcagcggc 108
             ||||||||||||||||||||
Sbjct: 71370 tgctgctcggcggcagcggc 71389



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      tgctgctcggcggcagcggc 108
               ||||||||||||||||||||
Sbjct: 1581587 tgctgctcggcggcagcggc 1581568



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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
              complete sequence
          Length = 148373

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     cgtggcggcgcggcggcgcg 81
              ||||||||||||||||||||
Sbjct: 113849 cgtggcggcgcggcggcgcg 113868



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>ref|XM_531633.2| PREDICTED: Canis familiaris similar to CG9410-PA, isoform A
           (LOC474402), mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 ctctcctctccctcccaacc 173
           ||||||||||||||||||||
Sbjct: 885 ctctcctctccctcccaacc 904



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>gb|AE014311.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 8 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    gtagacaaagagacaaagaaattg 238
              ||||| ||||||||||||||||||
Sbjct: 189466 gtagaaaaagagacaaagaaattg 189489



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>emb|AL591847.8| Human DNA sequence from clone RP11-510L10 on chromosome 13, complete
             sequence
          Length = 171596

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   gtagacaaagagacaaagaaattg 238
             ||||| ||||||||||||||||||
Sbjct: 70131 gtagaaaaagagacaaagaaattg 70154



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>emb|AL590808.6| Human DNA sequence from clone RP13-483F6 on chromosome X Contains a
             serine or cysteine proteinase inhibitor clade A (alpha-1
             antiproteinase, antitrypsin) member 7 (SERPINA7)
             pseudogene and the 5' end of gene FLJ10178, complete
             sequence
          Length = 102184

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ggatgcacactttcacccct 405
             ||||||||||||||||||||
Sbjct: 99653 ggatgcacactttcacccct 99634



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>emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, BAC clone T14K23
          Length = 101786

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   accaagctttctccgaagta 190
             ||||||||||||||||||||
Sbjct: 30430 accaagctttctccgaagta 30411



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>gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete sequence
          Length = 134023

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 384   agggatgcacactttcacccctaa 407
             |||||||| |||||||||||||||
Sbjct: 13601 agggatgcccactttcacccctaa 13578



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>emb|AL732293.14| Mouse DNA sequence from clone RP23-360J13 on chromosome 11, complete
             sequence
          Length = 117779

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   agaaagatcagttgtcagct 278
             ||||||||||||||||||||
Sbjct: 97668 agaaagatcagttgtcagct 97649



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       gccgtggcggcgcggcggcg 79
                ||||||||||||||||||||
Sbjct: 18425112 gccgtggcggcgcggcggcg 18425131



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 63       gtggcggcgcggcggcgcga 82
                ||||||||||||||||||||
Sbjct: 21219539 gtggcggcgcggcggcgcga 21219520



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 62       cgtggcggcgcggcggcgcg 81
                ||||||||||||||||||||
Sbjct: 17120482 cgtggcggcgcggcggcgcg 17120501



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>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence
          Length = 156100

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tgctgctcggcggcagcggc 108
              ||||||||||||||||||||
Sbjct: 149642 tgctgctcggcggcagcggc 149661



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    gtggcggcgcggcggcgcga 82
             ||||||||||||||||||||
Sbjct: 90296 gtggcggcgcggcggcgcga 90277



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>dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-160H12, complete
             sequence
          Length = 174697

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   acaagtgtagacctgtagac 220
             ||||||||||||||||||||
Sbjct: 81303 acaagtgtagacctgtagac 81322



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>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete
            sequence
          Length = 197847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  acaagtgtagacctgtagac 220
            ||||||||||||||||||||
Sbjct: 2381 acaagtgtagacctgtagac 2400



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>emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in linkage group 3,
             complete sequence
          Length = 69225

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ttcagttgtgttggattatg 325
             ||||||||||||||||||||
Sbjct: 52551 ttcagttgtgttggattatg 52570



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>gb|L32833.1|HUMZFHPA Homo sapiens zinc finger homeodomain protein (ATBF1-B) mRNA, 5' end
          Length = 1219

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  tgctgctcggcggcagcggc 108
           ||||||||||||||||||||
Sbjct: 853 tgctgctcggcggcagcggc 872



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       gccgtggcggcgcggcggcg 79
                ||||||||||||||||||||
Sbjct: 18351338 gccgtggcggcgcggcggcg 18351357



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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gccgtggcggcgcggcggcg 79
             ||||||||||||||||||||
Sbjct: 77011 gccgtggcggcgcggcggcg 77030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,098,079
Number of Sequences: 3902068
Number of extensions: 4098079
Number of successful extensions: 109148
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107950
Number of HSP's gapped (non-prelim): 1192
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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