Clone Information

BLAST Search Result

Clone Name	bastl03f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_462832.1\| Oryza sativa (japonica cultivar-group), predic...	500	e-138
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	500	e-138
3	dbj\|AP003103.2\| Oryza sativa (japonica cultivar-group) genomic D...	500	e-138
4	dbj\|AP002862.2\| Oryza sativa (japonica cultivar-group) genomic D...	500	e-138
5	gb\|AC120539.4\| Oryza sativa (japonica cultivar-group) chromosome...	385	e-104
6	gb\|AC123897.3\| Oryza sativa (japonica cultivar-group) chromosome...	385	e-104
7	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	385	e-104
8	dbj\|AK072825.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	385	e-104
9	dbj\|AK069716.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	385	e-104
10	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	385	e-104
11	dbj\|AK120719.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	377	e-101
12	dbj\|AK120713.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	377	e-101
13	dbj\|AB080596.1\| Botryococcus braunii bCOP mRNA for coatomer subu...	84	5e-13
14	ref\|NM_119298.2\| Arabidopsis thaliana clathrin binding AT4G31490...	46	0.10
15	ref\|NM_119297.2\| Arabidopsis thaliana clathrin binding AT4G31480...	46	0.10
16	emb\|AL080283.1\|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA...	46	0.10
17	emb\|AL161579.2\|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ...	46	0.10
18	ref\|XM_956946.1\| Neurospora crassa OR74A hypothetical protein (N...	44	0.41
19	ref\|XM_330944.1\| Neurospora crassa OR74A hypothetical protein (N...	44	0.41
20	emb\|X80052.1\|NCFOX2 N.crassa fox-2 gene	44	0.41
21	ref\|XM_544073.2\| PREDICTED: Canis familiaris similar to CG12002-...	42	1.6
22	gb\|AE005990.1\| Caulobacter crescentus CB15 section 316 of 359 of...	42	1.6
23	ref\|XM_693623.1\| PREDICTED: Danio rerio similar to CG12002-PA, i...	42	1.6
24	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	1.6
25	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	42	1.6
26	gb\|BC072525.1\| Rattus norvegicus paralemmin, mRNA (cDNA clone MG...	40	6.4
27	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	40	6.4
28	ref\|NM_130829.1\| Rattus norvegicus paralemmin (Palm), mRNA	40	6.4
29	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	6.4
30	dbj\|AP008229.1\| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c...	40	6.4
31	dbj\|AP007155.1\| Aspergillus oryzae RIB40 genomic DNA, SC003	40	6.4
32	gb\|CP000264.1\| Jannaschia sp. CCS1, complete genome	40	6.4
33	gb\|AC131405.5\| Rattus norvegicus BAC CH230-179I7 (Children's Ho...	40	6.4
34	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	6.4
35	gb\|DQ184948.1\| Malus x domestica putative receptor kinase (DIPM1...	40	6.4
36	gb\|AY103647.1\| Zea mays PCO142084 mRNA sequence	40	6.4
37	gb\|AE013598.1\| Xanthomonas oryzae pv. oryzae KACC10331, complete...	40	6.4
38	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	6.4
39	dbj\|AB058889.1\| Rattus norvegicus mRNA for paralemmin, complete cds	40	6.4

>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  500 bits (252), Expect = e-138
 Identities = 333/360 (92%)
 Strand = Plus / Plus

                                                                       
Query: 105 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 164
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                                                       
Query: 165 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 224
           |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365

                                                                       
Query: 225 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 284
            |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425

                                                                       
Query: 285 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 426 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 485

                                                                       
Query: 345 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 404
           ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 486 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 545

                                                                       
Query: 405 catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcac 464
           |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 546 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcac 605

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  500 bits (252), Expect = e-138
 Identities = 333/360 (92%)
 Strand = Plus / Minus

                                                                            
Query: 105      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 164
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                                                            
Query: 165      cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 224
                |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859

                                                                            
Query: 225      ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 284
                 |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799

                                                                            
Query: 285      caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 344
                ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 10025798 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 10025739

                                                                            
Query: 345      ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 404
                ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 10025738 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 10025679

                                                                            
Query: 405      catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcac 464
                |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 10025678 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcac 10025619

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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  500 bits (252), Expect = e-138
 Identities = 333/360 (92%)
 Strand = Plus / Minus

                                                                          
Query: 105    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 164
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                                                          
Query: 165    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 224
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141

                                                                          
Query: 225    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 284
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081

                                                                          
Query: 285    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 344
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 106080 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 106021

                                                                          
Query: 345    ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 404
              ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 106020 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 105961

                                                                          
Query: 405    catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcac 464
              |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 105960 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcac 105901

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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  500 bits (252), Expect = e-138
 Identities = 333/360 (92%)
 Strand = Plus / Minus

                                                                          
Query: 105    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 164
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                                                          
Query: 165    cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 224
              |||||||||   |||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352

                                                                          
Query: 225    ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 284
               |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292

                                                                          
Query: 285    caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 344
              ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 120291 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 120232

                                                                          
Query: 345    ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 404
              ||||||||||||||| ||||||||||| ||||| ||| | | ||||||||||||||||||
Sbjct: 120231 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 120172

                                                                          
Query: 405    catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcac 464
              |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 120171 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgtcac 120112

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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Minus

                                                                         
Query: 115   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                                                                         
Query: 175   aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
             || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313

                                                                         
Query: 235   cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
             |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 21253

                                                                         
Query: 295   cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
             ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 21252 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 21193

                                                                         
Query: 355   atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
             ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 21192 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 21133

                                                                         
Query: 412   cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
             ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 21132 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 21073

                 
Query: 472   ttcc 475
             ||||
Sbjct: 21072 ttcc 21069

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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Minus

                                                                          
Query: 115    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                                                                          
Query: 175    aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
              || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778

                                                                          
Query: 235    cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
              |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 170718

                                                                          
Query: 295    cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
              ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 170717 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 170658

                                                                          
Query: 355    atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
              ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 170657 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 170598

                                                                          
Query: 412    cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
              ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 170597 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 170538

                  
Query: 472    ttcc 475
              ||||
Sbjct: 170537 ttcc 170534

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Minus

                                                                           
Query: 115     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                                                                           
Query: 175     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641

                                                                           
Query: 235     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3653581

                                                                           
Query: 295     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3653580 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3653521

                                                                           
Query: 355     atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
               ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 3653520 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3653461

                                                                           
Query: 412     cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
               ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 3653460 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 3653401

                   
Query: 472     ttcc 475
               ||||
Sbjct: 3653400 ttcc 3653397

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>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 115 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                                                                       
Query: 175 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194

                                                                       
Query: 235 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 254

                                                                       
Query: 295 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 255 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 314

                                                                       
Query: 355 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 315 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 374

                                                                       
Query: 412 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
           ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 375 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 434

               
Query: 472 ttcc 475
           ||||
Sbjct: 435 ttcc 438

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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 115 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                                                                       
Query: 175 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261

                                                                       
Query: 235 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 321

                                                                       
Query: 295 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 322 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 381

                                                                       
Query: 355 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 382 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 441

                                                                       
Query: 412 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
           ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 442 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 501

               
Query: 472 ttcc 475
           ||||
Sbjct: 502 ttcc 505

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  385 bits (194), Expect = e-104
 Identities = 322/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Minus

                                                                           
Query: 115     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                                                                           
Query: 175     aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
               || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335

                                                                           
Query: 235     cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
               |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3662275

                                                                           
Query: 295     cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
               ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 3662274 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3662215

                                                                           
Query: 355     atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
               ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 3662214 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3662155

                                                                           
Query: 412     cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
               ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 3662154 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 3662095

                   
Query: 472     ttcc 475
               ||||
Sbjct: 3662094 ttcc 3662091

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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score =  377 bits (190), Expect = e-101
 Identities = 321/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 115 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 175 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 235 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 295 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                                                                       
Query: 355 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410

                                                                       
Query: 412 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
           | ||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 411 ctgaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 470

               
Query: 472 ttcc 475
           ||||
Sbjct: 471 ttcc 474

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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score =  377 bits (190), Expect = e-101
 Identities = 321/364 (88%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 115 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 174
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                                                       
Query: 175 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 234
           || ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230

                                                                       
Query: 235 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 294
           |||||| ||||||| |||||||| ||||||||||| ||    ||||||||||||||||||
Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290

                                                                       
Query: 295 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 354
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350

                                                                       
Query: 355 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 411
           ||| | |||||||||||    ||| | |||   || ||||||||||||||||||||||||
Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410

                                                                       
Query: 412 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcgtcacgctgcgg 471
           | ||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 411 ctgaacctccgcaacaacctccagcaccccaacgagtacatccgcggggtcacgctgcgc 470

               
Query: 472 ttcc 475
           ||||
Sbjct: 471 ttcc 474

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>dbj|AB080596.1| Botryococcus braunii bCOP mRNA for coatomer subunit beta, complete
           cds
          Length = 3313

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 394 gagatgatcctcatctgccagaatctccgcaacaacctgcagcaccccaatgagtacatc 453
           |||||||| || || |||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 484 gagatgattctgatttgccagaacctgcgcaacaacctgcagcacccgaacgagtacatc 543

                                 
Query: 454 cgcggcgtcacgctgcggttcc 475
           || || ||||||||||| ||||
Sbjct: 544 cggggggtcacgctgcgcttcc 565

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>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds
          Length = 3306

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 409 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
           ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 410 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 456

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>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds
          Length = 3296

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 409 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
           ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 361 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 407

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>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 409   tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
             ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 47630 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 47676



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 409   tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
             ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 42315 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 42361

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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 409   tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
             ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 35695 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 35741



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 409   tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 455
             ||||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 30380 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 30426

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>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 149  tcgacaagggctccgccgccat 170
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183

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>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 149  tcgacaagggctccgccgccat 170
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183

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>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 149  tcgacaagggctccgccgccat 170
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686

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>ref|XM_544073.2| PREDICTED: Canis familiaris similar to CG12002-PA, isoform A
            (LOC486944), mRNA
          Length = 3891

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 422  gcaacaacctgcagcacccca 442
            |||||||||||||||||||||
Sbjct: 1685 gcaacaacctgcagcacccca 1705

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>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete
           genome
          Length = 10324

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 188 cggatctggagggcagcgacgtcgccgcc 216
           |||||||| ||||| ||||||||||||||
Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 193 ctggagggcagcgacgtcgccgcc 216
           ||||||||| ||||||||||||||
Sbjct: 508 ctggagggcggcgacgtcgccgcc 531

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>ref|XM_693623.1| PREDICTED: Danio rerio similar to CG12002-PA, isoform A
           (LOC570177), mRNA
          Length = 2301

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 422 gcaacaacctgcagcacccca 442
           |||||||||||||||||||||
Sbjct: 146 gcaacaacctgcagcacccca 166

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 249     cctcctcaatggcgagaccctgccg 273
               |||||||||||||||||| ||||||
Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 209     tcgccgccaaggtcgaggcca 229
               |||||||||||||||||||||
Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194

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>gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MGC:91516
           IMAGE:7097177), complete cds
          Length = 2635

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 aggaccacaccatccagaag 333
           ||||||||||||||||||||
Sbjct: 886 aggaccacaccatccagaag 905

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     gccgccaaggtcgaggccat 230
               ||||||||||||||||||||
Sbjct: 2893165 gccgccaaggtcgaggccat 2893146

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>ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 aggaccacaccatccagaag 333
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     cgccgtcgccctccggcgcg 95
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250

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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     ccaaggtcgaggccatgaag 234
               ||||||||||||||||||||
Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ccaaggtcgaggccatgaag 234
              ||||||||||||||||||||
Sbjct: 728522 ccaaggtcgaggccatgaag 728541

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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     tcctcaatggcgagaccctg 270
               ||||||||||||||||||||
Sbjct: 4156014 tcctcaatggcgagaccctg 4156033

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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     gatcaaggcggatctggagg 199
               ||||||||||||||||||||
Sbjct: 1763887 gatcaaggcggatctggagg 1763868

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>gb|AC131405.5| Rattus norvegicus  BAC CH230-179I7 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    aggaccacaccatccagaag 333
              ||||||||||||||||||||
Sbjct: 142948 aggaccacaccatccagaag 142929

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     cgtcgccgccaaggtcgagg 226
               ||||||||||||||||||||
Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327

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>gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1) mRNA, complete
           cds
          Length = 2440

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 cgtcgtccgctacgtcctcc 307
           ||||||||||||||||||||
Sbjct: 265 cgtcgtccgctacgtcctcc 284

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>gb|AY103647.1| Zea mays PCO142084 mRNA sequence
          Length = 2598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  tgccgctggccgcgtcctcc 391
            ||||||||||||||||||||
Sbjct: 1826 tgccgctggccgcgtcctcc 1807

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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ccaaggtcgaggccatgaag 234
              ||||||||||||||||||||
Sbjct: 759001 ccaaggtcgaggccatgaag 759020

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     gcgacgtcgccgccaaggtc 222
               ||||||||||||||||||||
Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017

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>dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 aggaccacaccatccagaag 333
           ||||||||||||||||||||
Sbjct: 845 aggaccacaccatccagaag 864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,653,446
Number of Sequences: 3902068
Number of extensions: 2653446
Number of successful extensions: 52172
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51147
Number of HSP's gapped (non-prelim): 1017
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result