ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03f09 |
|---|---|
| Clone Library Name | barley_pub |
>SSM4_YEAST (P40318) Protein SSM4| Length = 1319 Score = 78.2 bits (191), Expect = 1e-14 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 8/110 (7%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSN--------SRQCEVCKHAFS 193 CRICR +++PL +PC C GSIK++H+ CLL+W+ N +C++C + Sbjct: 39 CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98 Query: 194 FSPVYAQNAPSRLPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFI 343 F +YA+N P ++PF L+ + + L + ++++ +P + Sbjct: 99 FKTIYAENMPEKIPFSLLLSKSILTFFEKARLALTIGLAAVLYIIGVPLV 148
>STATB_CAEEL (Q20977) Signal transducer and activator of transcription b (Zinc| finger protein STAT-B) Length = 966 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS-----FS 199 +CRIC+ D + PC C+G++ VH++CL +W++ SN + CE+CK ++ F Sbjct: 51 ICRICQMHEGD---MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEYTNSGAQFK 107 Query: 200 PVYAQNAP 223 P+ + P Sbjct: 108 PIKQWSKP 115
>MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 253 Score = 53.5 bits (127), Expect = 3e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) (RING finger protein 173) Length = 253 Score = 53.5 bits (127), Expect = 3e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 218 Score = 53.5 bits (127), Expect = 3e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 193 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 53.1 bits (126), Expect = 3e-07 Identities = 32/108 (29%), Positives = 54/108 (50%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 214 +CRIC +G ++ L PC C GS+K HQ CL++W+ CE+C + + V A Sbjct: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH---VIAI 217 Query: 215 NAPSRLPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFITYWIW 358 + + L +Q + V K +++A + L +I I++ IW Sbjct: 218 STKNPLQWQAISLTVIEK--------VQVAAAILGSLFLIASISWLIW 257
>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) Length = 408 Score = 52.8 bits (125), Expect = 4e-07 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 214 +CRIC +G ++ L PC C GS+K HQ CL++W+ CE+C + + + + Sbjct: 161 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 219 Query: 215 N 217 N Sbjct: 220 N 220
>MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) Length = 246 Score = 52.4 bits (124), Expect = 6e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 193 CRIC + E+ L PC C+G++ VH+ CL +WL SN+ CE+C F+ Sbjct: 64 CRICHEGANGENLLS-PCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) (RING finger protein 172) Length = 246 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 193 CRIC + G + L PC C+G++ VH+ CL +WL SN+ CE+C F+ Sbjct: 64 CRIC-HEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>VC07_SWPVK (P32225) Hypothetical protein C7| Length = 155 Score = 48.9 bits (115), Expect = 6e-06 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 214 VC IC+ DD + C C K VH +C+ +W+ +S R C++C ++ V Sbjct: 4 VCWICK---DDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISV--- 57 Query: 215 NAPSRLPFQELVFGVG--MKACHVFQFVLRLAFVLSVWL 325 R PF + VF + K+ ++ + F++S+ L Sbjct: 58 ----RKPFSQWVFSIKDCKKSAILYATLFLCTFIISLVL 92
>MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (EC 6.3.2.-)| (MK3) (ORF K3) Length = 201 Score = 45.8 bits (107), Expect = 5e-05 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQN 217 C IC E PL+ C C GS HQDCL WL+ S + C +C +S Sbjct: 8 CWICHQ---PEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYSMK------ 58 Query: 218 APSRLPFQELVFG-----VGMKACHVFQFV--LRLAFVLSVWLMI 331 P +E +G M+AC + L V+ WL++ Sbjct: 59 -WKTKPLREWTWGEEEVLAAMEACLPLVLIPLAVLMIVMGTWLLV 102
>MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-) (MIR2)| (IE1A protein) (ORF K5) Length = 256 Score = 45.8 bits (107), Expect = 5e-05 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 181 +C ICR +E +PCAC+G + VH CL WL S + C++C+ Sbjct: 14 ICWICREEVGNEGI--HPCACTGELDVVHPQCLSTWLTVSRNTACQMCR 60
>MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-) (MIR1)| (IE1B protein) (ORF K3) Length = 333 Score = 43.9 bits (102), Expect = 2e-04 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 9/109 (8%) Frame = +2 Query: 35 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS----FSP 202 VC IC +E C C+G ++ VH+ CL WL S + C++C ++ + P Sbjct: 8 VCWICNEELGNER--FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTRVVWRP 65 Query: 203 VYAQNAPSRLPFQELVFGVGMKACHVFQFVLR-----LAFVLSVWLMII 334 + RL +QE G++ VF F++ LA VWL I+ Sbjct: 66 LREMTLLPRLTYQE-----GLELI-VFIFIMTLGAAGLAAATWVWLYIV 108
>VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1| Length = 285 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 181 C ICR+ G+ RY C C G +++ H++CL W+ S ++C+ C+ Sbjct: 132 CWICRD-GESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQ 177
>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor| Length = 357 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 181 C IC +DE PLR+ CS + H +C+ +WL S+ C VC+ Sbjct: 120 CAICLCEFEDEEPLRWMPPCSHTF---HANCIDEWL--SSRSTCPVCR 162
>ATL1H_ARATH (Q9C7I1) Putative RING-H2 finger protein ATL1H precursor| Length = 327 Score = 35.0 bits (79), Expect = 0.097 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQN 217 C IC N +DE LR CS + H C+ WL S+ C VC+ + P QN Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAF---HASCIDVWL--SSRSTCPVCRASLPPKPGSDQN 182 Query: 218 A 220 + Sbjct: 183 S 183
>ATL4A_ARATH (Q9M0R7) Putative RING-H2 finger protein ATL4A| Length = 132 Score = 33.9 bits (76), Expect = 0.22 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 181 C +C N D+ LR C + H DC+ WL HS++ C +C+ Sbjct: 85 CVVCLNEFKDDETLRLVPPC---VHVFHADCVDIWLSHSST--CPICR 127
>RHA1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a| Length = 159 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQN 217 C +C + + + +R C H CL +W+ N +C VC+H F Y Q+ Sbjct: 86 CTVCLSDFESDDKVRQLPKCG---HVFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYTQS 142
>ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precursor| Length = 345 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSP 202 C IC + +D+ LR+ CS + H +C+ WL S+ C VC+ S P Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTF---HANCIDVWL--SSWSTCPVCRANLSLKP 172
>ATL5L_ARATH (Q9FIR0) Putative RING-H2 finger protein ATL5L| Length = 289 Score = 32.0 bits (71), Expect = 0.82 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +2 Query: 38 CRICRNRGDDEHPL-RYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 214 C IC ++EH L R C HQ+C+ QWL+ +++ C VC+ Sbjct: 114 CAICLLEFEEEHILLRLLTTC---YHVFHQECIDQWLE--SNKTCPVCRRNLD------P 162 Query: 215 NAPSRLPFQELVFGVGMKACH 277 NAP + +EL+ V + H Sbjct: 163 NAPENI--KELIIEVIQENAH 181
>NUCM_ACACA (Q37384) NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3)| (EC 1.6.99.3) (NADH dehydrogenase subunit 7) Length = 401 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Frame = +2 Query: 230 LPFQELVFGVGMKACHVFQFVLRLAFVLSVWLMIIPFITYWIWRLTFVRSLGEAQRLF-- 403 + F E V G M A ++ + F L +W I+ F+ + WRL V L R++ Sbjct: 149 MEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVEELLNGNRIWKQ 208 Query: 404 ----LSHISAQLILSDCLHGF 454 + ++A+ LS HGF Sbjct: 209 RLVDVGIVTAEEALS---HGF 226
>ZN294_HUMAN (O94822) Zinc finger protein 294| Length = 1766 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +2 Query: 92 ACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAF 190 AC K H CL +W SN C +C+ F Sbjct: 1733 ACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765
>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)| Length = 1767 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +2 Query: 92 ACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAF 190 AC K H CL +W SN C +C+ F Sbjct: 1734 ACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1766
>ZN337_HUMAN (Q9Y3M9) Zinc finger protein 337| Length = 751 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -3 Query: 243 SWKGSLLGAF*A*TGEKE---NACLQTSHWRELLWSSHWRRQS 124 +WKG+LL +GEK N C Q W+ L HWR S Sbjct: 638 NWKGNLLTHQRTHSGEKPFVCNVCGQGFSWKRSLTRHHWRIHS 680
>SECY_LACLC (P27148) Preprotein translocase secY subunit| Length = 439 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +2 Query: 275 HVFQFVLRLAFVLSVWL---MIIPFITYWIWRLTFVRSLGEAQRLFLSHISAQLILSDCL 445 +V + ++RLA V S++L IIP +W L + +LG L L ++ Q + L Sbjct: 362 YVSRLLMRLATVGSLFLGLISIIPIAAQNVWGLPKIVALGGTSLLILIQVAIQAVKQ--L 419 Query: 446 HGFLL 460 G+LL Sbjct: 420 EGYLL 424
>CP27B_RAT (O35132) 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial| precursor (EC 1.14.13.13) (Cytochrome P450 subfamily XXVIIB polypeptide 1) (Cytochrome p450 27B1) (Calcidiol 1-monooxygenase) (25-OHD-1 alpha-hydroxylase) (25-hydroxyvitamin D(3) 1 Length = 501 Score = 29.3 bits (64), Expect = 5.3 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +2 Query: 116 VHQDCLLQWLDHSNSRQCEVCKHAFSFSPV-YAQNAPSRLPFQELVFGVGMKAC 274 + QD L+ ++ SR + SF+P + P+ PF L FG G ++C Sbjct: 395 IPQDTLVSLCHYATSRDPAQFREPNSFNPARWLGEGPAPHPFASLPFGFGKRSC 448
>UL49_HHV6U (P52441) Protein U33| Length = 470 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +2 Query: 86 PCACSGSIKFVHQ-----DCLLQWLDHSNSRQCEVCKHAF 190 PC+C VH LL+ + H + QC+ C+H+F Sbjct: 405 PCSCRSCYSTVHLYNVTVKKLLRLVSHGSDFQCQRCQHSF 444
>COX1_LEITA (P14544) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 549 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = +2 Query: 203 VYAQNAPSRLPFQELVFGVGMKAC-HVFQFVLRLAFVLSVWLMIIPFITYWIWRLTFVRS 379 V + SR F + +G+ C +F ++ + MII F Y++ F+ Sbjct: 296 VVGMDVDSRAYFGGVSILIGLPTCVKLFNWIYSFLYTD----MIITFEVYFVIMFIFMFL 351 Query: 380 LGEAQRLFLSHISAQLILSD 439 +G LFLS++ ++L D Sbjct: 352 IGAVTGLFLSNVGIDIMLHD 371
>ASR1_YEAST (Q06834) Alcohol-sensitive RING finger protein 1| Length = 288 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 38 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 181 C IC DD+ ++ C KF H +C+ +W +S + +C +C+ Sbjct: 4 CPICL--ADDQEGEQFGCLNVCGHKF-HLNCIREWHKYSINLKCPICR 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,545,531 Number of Sequences: 219361 Number of extensions: 1007760 Number of successful extensions: 2786 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2783 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
