ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 1e-16
2gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
5dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
6gb|AY325488.1| Cavia porcellus clone pGP1 5S ribosomal RNA gene,... 44 0.40
7gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genom... 44 0.40
8gb|AY123637.1| Strumigenys sp. Matzu CB internal transcribed spa... 44 0.40
9gb|AY121815.1| Strumigenys formosensis internal transcribed spac... 44 0.40
10ref|XM_470282.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
11ref|XM_952897.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
12ref|XM_327647.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
13emb|BX883049.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.6
14emb|BX883048.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.6
15emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
16gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 42 1.6
17ref|NG_004527.1| Rattus norvegicus RT1 class I gene RT1-O2 (RT1-... 42 1.6
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20ref|XM_574718.1| PREDICTED: Rattus norvegicus similar to class I... 42 1.6
21dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
24emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.6
25dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.6
26ref|NM_188246.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
27ref|XM_466415.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
28ref|XM_472838.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
29gb|BT019254.1| Zea mays clone Contig927.F mRNA sequence 40 6.3
30gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
31ref|XM_422695.1| PREDICTED: Gallus gallus similar to procollagen... 40 6.3
32emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K... 40 6.3
33emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
34emb|AJ251789.2|LCA251789 Lactobacillus casei bacteriophage A2 co... 40 6.3
35gb|AC026904.7| Homo sapiens chromosome 8, clone RP11-567J20, com... 40 6.3
36gb|AY123633.1| Strumigenys orchidensis internal transcribed spac... 40 6.3
37gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, ... 40 6.3
38gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, ... 40 6.3
39gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.3
40gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 40 6.3
41dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, compl... 40 6.3
42gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Rosw... 40 6.3
43ref|XM_944437.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.3
44ref|XM_932931.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.3
45dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
46dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
49emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
50ref|XM_343439.2| PREDICTED: Rattus norvegicus branched chain ket... 40 6.3
51gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, com... 40 6.3
52dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
53dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
54dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
55dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
56gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                           
Query: 386     tacttcacccggccgtccatcgacgagctggtcgagagggaggcggctgacccgggctac 445
               |||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 3841561 tacttcaccaagccgtcgatcgatgagctggtggagagggaggcggctgaccctggctac 3841620

                                   
Query: 446     tgcagcagggttccagattt 465
               ||||||||||| || |||||
Sbjct: 3841621 tgcagcagggtcccggattt 3841640



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 70       ccgcgccgccgccgctccccacgctc 95
                |||||||||||| |||||||||||||
Sbjct: 18694482 ccgcgccgccgctgctccccacgctc 18694507



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 137     tccgccgtctcccacgcggcg 157
               |||||||||||||||||||||
Sbjct: 3660400 tccgccgtctcccacgcggcg 3660420
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                          
Query: 386    tacttcacccggccgtccatcgacgagctggtcgagagggaggcggctgacccgggctac 445
              |||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 120185 tacttcaccaagccgtcgatcgatgagctggtggagagggaggcggctgaccctggctac 120244

                                  
Query: 446    tgcagcagggttccagattt 465
              ||||||||||| || |||||
Sbjct: 120245 tgcagcagggtcccggattt 120264
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                           
Query: 386     tacttcacccggccgtccatcgacgagctggtcgagagggaggcggctgacccgggctac 445
               |||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 3841672 tacttcaccaagccgtcgatcgatgagctggtggagagggaggcggctgaccctggctac 3841731

                                   
Query: 446     tgcagcagggttccagattt 465
               ||||||||||| || |||||
Sbjct: 3841732 tgcagcagggtcccggattt 3841751



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 70       ccgcgccgccgccgctccccacgctc 95
                |||||||||||| |||||||||||||
Sbjct: 18688523 ccgcgccgccgctgctccccacgctc 18688548



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 137     tccgccgtctcccacgcggcg 157
               |||||||||||||||||||||
Sbjct: 3660511 tccgccgtctcccacgcggcg 3660531
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                         
Query: 386   tacttcacccggccgtccatcgacgagctggtcgagagggaggcggctgacccgggctac 445
             |||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 48034 tacttcaccaagccgtcgatcgatgagctggtggagagggaggcggctgaccctggctac 48093

                                 
Query: 446   tgcagcagggttccagattt 465
             ||||||||||| || |||||
Sbjct: 48094 tgcagcagggtcccggattt 48113
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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
           insert sequence
          Length = 3941

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 386 tacttcacccggccgtccatcgacgagctggtcgagagggaggcggctgacccgggctac 445
           |||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 311 tacttcaccaagccgtcgatcgatgagctggtggagagggaggcggctgaccctggctac 370

                               
Query: 446 tgcagcagggttccagattt 465
           ||||||||||| || |||||
Sbjct: 371 tgcagcagggtcccggattt 390
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>gb|AY325488.1| Cavia porcellus clone pGP1 5S ribosomal RNA gene, complete sequence
          Length = 723

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 74  gccgccgccgctccccacgctc 95
           ||||||||||||||||||||||
Sbjct: 615 gccgccgccgctccccacgctc 636
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>gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genomic sequence, complete
             sequence
          Length = 171120

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 70    ccgcgccgccgccgctccccacgctc 95
             |||||||||||| |||||||||||||
Sbjct: 83403 ccgcgccgccgctgctccccacgctc 83378
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>gb|AY123637.1| Strumigenys sp. Matzu CB internal transcribed spacer 1, partial
           sequence
          Length = 962

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 91  cgctcgtcgggcacacgccgtc 112
           ||||||||||||||||||||||
Sbjct: 546 cgctcgtcgggcacacgccgtc 525
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>gb|AY121815.1| Strumigenys formosensis internal transcribed spacer 1, complete
           sequence
          Length = 975

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 91  cgctcgtcgggcacacgccgtc 112
           ||||||||||||||||||||||
Sbjct: 541 cgctcgtcgggcacacgccgtc 520
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>ref|XM_470282.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 137  tccgccgtctcccacgcggcg 157
            |||||||||||||||||||||
Sbjct: 1019 tccgccgtctcccacgcggcg 999
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>ref|XM_952897.1| Neurospora crassa OR74A hypothetical protein (NCU07362.1) partial
           mRNA
          Length = 1563

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  aagccgcgccgccgccgctcc 87
           |||||||||||||||||||||
Sbjct: 356 aagccgcgccgccgccgctcc 376
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>ref|XM_327647.1| Neurospora crassa OR74A hypothetical protein (NCU07362.1) partial
           mRNA
          Length = 1563

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  aagccgcgccgccgccgctcc 87
           |||||||||||||||||||||
Sbjct: 356 aagccgcgccgccgccgctcc 376
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>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
           assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
           RT1n haplotype; segment 8/11
          Length = 349476

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 275 cgggcgggggcggcaccgcgg 295
           |||||||||||||||||||||
Sbjct: 260 cgggcgggggcggcaccgcgg 240
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>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 7/11
          Length = 349943

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    cgggcgggggcggcaccgcgg 295
              |||||||||||||||||||||
Sbjct: 341328 cgggcgggggcggcaccgcgg 341308
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     cgccgccgccgctccccacgc 93
              |||||||||||||||||||||
Sbjct: 143702 cgccgccgccgctccccacgc 143722
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>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
              sequence
          Length = 160738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 137    tccgccgtctcccacgcggcg 157
              |||||||||||||||||||||
Sbjct: 120977 tccgccgtctcccacgcggcg 120957
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>ref|NG_004527.1| Rattus norvegicus RT1 class I gene RT1-O2 (RT1-O2) pseudogene on
            chromosome 20
          Length = 5522

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  cgggcgggggcggcaccgcgg 295
            |||||||||||||||||||||
Sbjct: 2453 cgggcgggggcggcaccgcgg 2433
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 73       cgccgccgccgctccccacgc 93
                |||||||||||||||||||||
Sbjct: 30876181 cgccgccgccgctccccacgc 30876201



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 138      ccgccgtctcccacgcggcg 157
                ||||||||||||||||||||
Sbjct: 23604932 ccgccgtctcccacgcggcg 23604951



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 66       caagccgcgccgccgccgct 85
                ||||||||||||||||||||
Sbjct: 17316079 caagccgcgccgccgccgct 17316060



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 66       caagccgcgccgccgccgct 85
                ||||||||||||||||||||
Sbjct: 17281046 caagccgcgccgccgccgct 17281027
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 73       cgccgccgccgctccccacgc 93
                |||||||||||||||||||||
Sbjct: 29374648 cgccgccgccgctccccacgc 29374668
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>ref|XM_574718.1| PREDICTED: Rattus norvegicus similar to class I histocompatibility
           antigen alpha chain - cotton-top tamarin (LOC499402),
           mRNA
          Length = 1736

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 275 cgggcgggggcggcaccgcgg 295
           |||||||||||||||||||||
Sbjct: 886 cgggcgggggcggcaccgcgg 906
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>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0621D05
          Length = 180250

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    cgccgccgccgctccccacgc 93
             |||||||||||||||||||||
Sbjct: 85529 cgccgccgccgctccccacgc 85549
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0018H04
          Length = 142053

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     cgccgccgccgctccccacgc 93
              |||||||||||||||||||||
Sbjct: 137446 cgccgccgccgctccccacgc 137466
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>dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036H02, full
            insert sequence
          Length = 1540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 137  tccgccgtctcccacgcggcg 157
            |||||||||||||||||||||
Sbjct: 1108 tccgccgtctcccacgcggcg 1088
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    cgccgccgccgctccccacgc 93
             |||||||||||||||||||||
Sbjct: 52758 cgccgccgccgctccccacgc 52778
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 206     ggctgcgcgccggcggcgagc 226
               |||||||||||||||||||||
Sbjct: 2073259 ggctgcgcgccggcggcgagc 2073279
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>ref|NM_188246.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 69 gccgcgccgccgccgctccc 88
          ||||||||||||||||||||
Sbjct: 52 gccgcgccgccgccgctccc 71
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>ref|XM_466415.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ggcgggggcggcaccgcggc 296
           ||||||||||||||||||||
Sbjct: 284 ggcgggggcggcaccgcggc 265
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>ref|XM_472838.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ccgccgtctcccacgcggcg 157
            ||||||||||||||||||||
Sbjct: 2438 ccgccgtctcccacgcggcg 2457
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>gb|BT019254.1| Zea mays clone Contig927.F mRNA sequence
          Length = 1008

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ggccacgccctgcagctcct 195
           ||||||||||||||||||||
Sbjct: 904 ggccacgccctgcagctcct 885
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>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    cgccgccgctccccacgctcgtcg 99
             |||||||||||||||| |||||||
Sbjct: 91144 cgccgccgctccccaccctcgtcg 91121
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>ref|XM_422695.1| PREDICTED: Gallus gallus similar to procollagen-lysine,
            2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2
            isoform a; Procollagen-lysine, 2-oxoglutarate
            5-dioxygenase (lysine hydroxylase) (LOC424882), mRNA
          Length = 3460

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   ccgcgccgccgccgctccccacgc 93
            |||| |||||||||||||||||||
Sbjct: 1023 ccgcaccgccgccgctccccacgc 1000
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>emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K12 on chromosome 1q25.3-31.2
             Contains the 5' end of the C1orf24 gene for chromosome 1
             open reading frame 24, the RNF2 gene for ring finger
             protein 2, a ferritin heavy polypeptide (FTH) pseudogene
             and the 3' end of the C1orf25 gene for chromosome 1 open
             reading frame 25, complete sequence
          Length = 201823

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   gcgccgggcgggggcggcac 290
             ||||||||||||||||||||
Sbjct: 34570 gcgccgggcgggggcggcac 34589
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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ccgccgtctcccacgcggcg 157
             ||||||||||||||||||||
Sbjct: 47613 ccgccgtctcccacgcggcg 47632
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>emb|AJ251789.2|LCA251789 Lactobacillus casei bacteriophage A2 complete genome
          Length = 43411

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  gctactgcagcagggttcca 460
            ||||||||||||||||||||
Sbjct: 9726 gctactgcagcagggttcca 9745
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>gb|AC026904.7| Homo sapiens chromosome 8, clone RP11-567J20, complete sequence
          Length = 175369

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cggaggcgccgggcgggggc 285
             ||||||||||||||||||||
Sbjct: 54608 cggaggcgccgggcgggggc 54627
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>gb|AY123633.1| Strumigenys orchidensis internal transcribed spacer 1, partial
           sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  ctcgtcgggcacacgccgtc 112
           ||||||||||||||||||||
Sbjct: 504 ctcgtcgggcacacgccgtc 485
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>gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, promoter region and
            complete cds
          Length = 3958

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   gcgccgccgccgctccccac 91
            ||||||||||||||||||||
Sbjct: 3367 gcgccgccgccgctccccac 3348
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>gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, complete cds
          Length = 1394

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gcgccgccgccgctccccac 91
           ||||||||||||||||||||
Sbjct: 803 gcgccgccgccgctccccac 784
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     gggctgcgcgccggcggcga 224
               ||||||||||||||||||||
Sbjct: 1998991 gggctgcgcgccggcggcga 1999010
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     cttcgcaagccgcgccgccg 80
              ||||||||||||||||||||
Sbjct: 503686 cttcgcaagccgcgccgccg 503667
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>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds
          Length = 70631

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   catcgacgagctggtcgaga 422
             ||||||||||||||||||||
Sbjct: 65145 catcgacgagctggtcgaga 65164



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   catcgacgagctggtcgaga 422
             ||||||||||||||||||||
Sbjct: 61745 catcgacgagctggtcgaga 61726
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>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer
              Institute Human BAC Library) complete sequence
          Length = 199070

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    gagggaggcggctgacccgg 440
              ||||||||||||||||||||
Sbjct: 140746 gagggaggcggctgacccgg 140765
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>ref|XM_944437.1| PREDICTED: Homo sapiens hypothetical protein LOC650957 (LOC650957),
           mRNA
          Length = 2075

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 gagggaggcggctgacccgg 440
           ||||||||||||||||||||
Sbjct: 293 gagggaggcggctgacccgg 274
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>ref|XM_932931.1| PREDICTED: Homo sapiens hypothetical protein LOC645485 (LOC645485),
           mRNA
          Length = 2089

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 gagggaggcggctgacccgg 440
           ||||||||||||||||||||
Sbjct: 293 gagggaggcggctgacccgg 274
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     agccgcgccgccgccgctccccac 91
              |||| |||||||||||||||||||
Sbjct: 807662 agccccgccgccgccgctccccac 807685
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 76       cgccgccgctccccacgctcgtcg 99
                |||||||||||||||| |||||||
Sbjct: 20092819 cgccgccgctccccaccctcgtcg 20092796
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      ggcgggggcggcaccgcggc 296
                ||||||||||||||||||||
Sbjct: 22254432 ggcgggggcggcaccgcggc 22254451
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      gccgcgccgccgccgctccc 88
               ||||||||||||||||||||
Sbjct: 5215571 gccgcgccgccgccgctccc 5215552
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>emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0034E24,
              complete sequence
          Length = 152220

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     caagccgcgccgccgccgct 85
              ||||||||||||||||||||
Sbjct: 116303 caagccgcgccgccgccgct 116284



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    caagccgcgccgccgccgct 85
             ||||||||||||||||||||
Sbjct: 81270 caagccgcgccgccgccgct 81251
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>ref|XM_343439.2| PREDICTED: Rattus norvegicus branched chain keto acid dehydrogenase
           E1, beta polypeptide (Bckdhb), mRNA
          Length = 1480

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 64  cgcaagccgcgccgccgccgctcc 87
           ||||| ||||||||||||||||||
Sbjct: 108 cgcaatccgcgccgccgccgctcc 85
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>gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, complete cds
          Length = 398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 65 gcaagccgcgccgccgccgc 84
          ||||||||||||||||||||
Sbjct: 12 gcaagccgcgccgccgccgc 31
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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1267B06
          Length = 156989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ggcgggggcggcaccgcggc 296
             ||||||||||||||||||||
Sbjct: 13076 ggcgggggcggcaccgcggc 13095
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>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0419B01
          Length = 149610

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    gccgcgccgccgccgctccc 88
             ||||||||||||||||||||
Sbjct: 10822 gccgcgccgccgccgctccc 10803
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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1342F01
          Length = 153287

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    ggcgggggcggcaccgcggc 296
              ||||||||||||||||||||
Sbjct: 150276 ggcgggggcggcaccgcggc 150295
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>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1138_B05
          Length = 113982

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 68   agccgcgccgccgccgctccccac 91
            |||| |||||||||||||||||||
Sbjct: 6418 agccccgccgccgccgctccccac 6441
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     gctgcgcgccggcggcgagc 226
               ||||||||||||||||||||
Sbjct: 4160594 gctgcgcgccggcggcgagc 4160613


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,002,947
Number of Sequences: 3902068
Number of extensions: 3002947
Number of successful extensions: 87758
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85453
Number of HSP's gapped (non-prelim): 2305
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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