>ref|NM_187586.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2631

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                       
Query: 204 accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
           ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 85  accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 144

                                                                       
Query: 264 gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
           ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 145 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 204

                                                    
Query: 324 aagaaagcccgcctccgctccgaggggatgaacattctttt 364
           ||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 205 aagaatgctcgcctgcgccctgagggaatgaacattctttt 245



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 433 tcagtgggaatcattgncagatatatagggacactgtg 470
           |||||||||| |||||  ||||||||||||||||||||
Sbjct: 314 tcagtgggaaacattgcaagatatatagggacactgtg 351

>dbj|AK103695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J18, full
           insert sequence
          Length = 3039

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                       
Query: 204 accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
           ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 196 accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 255

                                                                       
Query: 264 gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
           ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 256 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 315

                                                    
Query: 324 aagaaagcccgcctccgctccgaggggatgaacattctttt 364
           ||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 316 aagaatgctcgcctgcgccctgagggaatgaacattctttt 356



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 433 tcagtgggaatcattgncagatatatagggacactgtg 470
           |||||||||| |||||  ||||||||||||||||||||
Sbjct: 425 tcagtgggaaacattgcaagatatatagggacactgtg 462

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                           
Query: 204     accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
               ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 1538642 accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 1538583

                                                                           
Query: 264     gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
               ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 1538582 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 1538523

                             
Query: 324     aagaaagcccgcct 337
               ||||| || |||||
Sbjct: 1538522 aagaatgctcgcct 1538509



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 433     tcagtgggaatcattgncagatatatagggacactgtg 470
               |||||||||| |||||  ||||||||||||||||||||
Sbjct: 1538242 tcagtgggaaacattgcaagatatatagggacactgtg 1538205

>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
             complete sequence
          Length = 117612

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                         
Query: 204   accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
             ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 75815 accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 75756

                                                                         
Query: 264   gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
             ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 75755 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 75696

                           
Query: 324   aagaaagcccgcct 337
             ||||| || |||||
Sbjct: 75695 aagaatgctcgcct 75682



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 433   tcagtgggaatcattgncagatatatagggacactgtg 470
             |||||||||| |||||  ||||||||||||||||||||
Sbjct: 75415 tcagtgggaaacattgcaagatatatagggacactgtg 75378

>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
             complete sequence
          Length = 127098

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                         
Query: 204   accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
             ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 18203 accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 18144

                                                                         
Query: 264   gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
             ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 18143 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 18084

                           
Query: 324   aagaaagcccgcct 337
             ||||| || |||||
Sbjct: 18083 aagaatgctcgcct 18070



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 433   tcagtgggaatcattgncagatatatagggacactgtg 470
             |||||||||| |||||  ||||||||||||||||||||
Sbjct: 17803 tcagtgggaaacattgcaagatatatagggacactgtg 17766

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                           
Query: 204     accccgcccaaaccctcgccggtgggcgtcgacgaaatgcgcgccgtggcgcgcaagttc 263
               ||||||||||| ||||||||||||  |  ||| || |||||||| |||||||||||||||
Sbjct: 1538640 accccgcccaagccctcgccggtgtcccccgaggagatgcgcgcggtggcgcgcaagttc 1538581

                                                                           
Query: 264     gccgaccagcccgtgcagaacccggagcccggcgtctgggccgtcctcaccgccatctcc 323
               ||||| || ||||| |||||||| ||   ||| |||||||| ||||| || |||||||||
Sbjct: 1538580 gccgagcaacccgtacagaaccccgacgacggtgtctgggctgtcctgacggccatctcc 1538521

                             
Query: 324     aagaaagcccgcct 337
               ||||| || |||||
Sbjct: 1538520 aagaatgctcgcct 1538507



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 433     tcagtgggaatcattgncagatatatagggacactgtg 470
               |||||||||| |||||  ||||||||||||||||||||
Sbjct: 1538240 tcagtgggaaacattgcaagatatatagggacactgtg 1538203

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 178    agtcgcccgtctcctgctccgcgccg 203
              ||||||||||||||||| ||||||||
Sbjct: 159273 agtcgcccgtctcctgcaccgcgccg 159248

>ref|XM_526872.1| PREDICTED: Pan troglodytes similar to mutS homolog 3; mutS (E. coli)
            homolog 3 (LOC471494), mRNA
          Length = 3441

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 2774 atttctgctgtgtcagtcagt 2754

>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ctcctgctccgcgccgacccc 208
             |||||||||||||||||||||
Sbjct: 82309 ctcctgctccgcgccgacccc 82289

>emb|CR857902.1| Pongo pygmaeus mRNA; cDNA DKFZp469H2415 (from clone DKFZp469H2415)
          Length = 4438

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 2940 atttctgctgtgtcagtcagt 2920

>ref|NM_002439.2| Homo sapiens mutS homolog 3 (E. coli) (MSH3), mRNA
          Length = 4645

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 3138 atttctgctgtgtcagtcagt 3118

>gb|AY275681.1| Homo sapiens mutS homolog 3 (E. coli) (MSH3) gene, complete cds
          Length = 223885

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 417    atttctgctgtgtcagtcagt 437
              |||||||||||||||||||||
Sbjct: 200131 atttctgctgtgtcagtcagt 200111

>gb|AC016565.6|AC016565 Homo sapiens chromosome 5 clone CTC-538O12, complete sequence
          Length = 140092

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 417    atttctgctgtgtcagtcagt 437
              |||||||||||||||||||||
Sbjct: 100908 atttctgctgtgtcagtcagt 100928

>dbj|D61419.2| Homo sapiens hMSH3 gene for hMSH3 protein, complete cds
          Length = 12089

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 9096 atttctgctgtgtcagtcagt 9076

>gb|AC022493.12|AC022493 Homo sapiens 5 BAC RP11-241J12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153078

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   atttctgctgtgtcagtcagt 437
             |||||||||||||||||||||
Sbjct: 30440 atttctgctgtgtcagtcagt 30460

>gb|J04810.1|HUMDUG Human MSH3 gene, complete cds
          Length = 3528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 2946 atttctgctgtgtcagtcagt 2926

>gb|U61981.1|HSU61981 Human putative mismatch repair/binding protein hMSH3 (hMSH3) mRNA,
            complete cds
          Length = 4374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 417  atttctgctgtgtcagtcagt 437
            |||||||||||||||||||||
Sbjct: 2874 atttctgctgtgtcagtcagt 2854

>ref|XM_363370.1| Magnaporthe grisea 70-15 hypothetical protein (MG01296.4) partial
           mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 gcaagttcgccgaccagccc 275
           ||||||||||||||||||||
Sbjct: 331 gcaagttcgccgaccagccc 312

>gb|DQ099419.1| Toxoplasma gondii putative ATP-binding cassette protein (ABC.1179)
            gene, complete cds
          Length = 5400

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  cccggagcccggcgtctggg 303
            ||||||||||||||||||||
Sbjct: 3919 cccggagcccggcgtctggg 3938

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 180     tcgcccgtctcctgctccgcgccg 203
               ||||||||||||||| ||||||||
Sbjct: 2122138 tcgcccgtctcctgcaccgcgccg 2122115

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     tcgcccgtctcctgctccgc 199
               ||||||||||||||||||||
Sbjct: 2174002 tcgcccgtctcctgctccgc 2174021

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 180    tcgcccgtctcctgctccgcgccg 203
              ||||||||||||||| ||||||||
Sbjct: 283849 tcgcccgtctcctgcaccgcgccg 283826

>gb|AC090200.4| Homo sapiens chromosome 8, clone RP11-628E19, complete sequence
          Length = 149955

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    tgtgtcagtcagtgggaatc 444
              ||||||||||||||||||||
Sbjct: 102684 tgtgtcagtcagtgggaatc 102665

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 180     tcgcccgtctcctgctccgcgccg 203
               ||||||||||||||| ||||||||
Sbjct: 2041134 tcgcccgtctcctgcaccgcgccg 2041157

>emb|X70982.1|SMCYPEG3 S.melongena CYP71A3 mRNA for P450 hydroxylase
          Length = 1096

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 accgccatctccaagaaagc 331
           ||||||||||||||||||||
Sbjct: 76  accgccatctccaagaaagc 95

>gb|AF109915.1|AF109915 Nitrobacter winogradskyi strain IFO14297 ribulose 1,5 bis-phosphate
           carboxylase/oxygenase L subunit (cbbL) and ribulose 1,5
           bis-phosphate carboxylase/oxygenase S subunit (cbbS)
           genes, complete cds
          Length = 2193

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 tcgcccgtctcctgctccgc 199
           ||||||||||||||||||||
Sbjct: 929 tcgcccgtctcctgctccgc 910

>gb|AF109914.1|AF109914 Nitrobacter winogradskyi strain ATCC14123 ribulose 1,5
           bis-phosphate carboxylase/oxygenase L subunit (cbbL) and
           ribulose 1,5 bis-phosphate carboxylase/oxygenase S
           subunit (cbbS) genes, complete cds
          Length = 2213

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 tcgcccgtctcctgctccgc 199
           ||||||||||||||||||||
Sbjct: 933 tcgcccgtctcctgctccgc 914

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 180     tcgcccgtctcctgctccgcgccg 203
               ||||||||||||||| ||||||||
Sbjct: 2684597 tcgcccgtctcctgcaccgcgccg 2684620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,305,051
Number of Sequences: 3902068
Number of extensions: 2305051
Number of successful extensions: 42706
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42368
Number of HSP's gapped (non-prelim): 332
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)