ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111306.1| Zea mays CL10099_1 mRNA sequence Length = 649 Score = 133 bits (67), Expect = 5e-28 Identities = 150/178 (84%) Strand = Plus / Plus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 |||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||| || Sbjct: 240 atggagcccgcgggcgcgcgcaaggagtggcgcgccgnccccgactcctcgctccgctcc 299 Query: 336 aatggcgccgaggatgccgcggagcgcatgaagatggcgcaatccgagggcagggccatc 395 ||||||||||||||||||||||||| | |||| ||| ||| || |||| | || ||| Sbjct: 300 aatggcgccgaggatgccgcggagcacgggaagctggggcagtcggaggaacgagctatc 359 Query: 396 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcgatgggagcg 453 ||| |||| | | |||| || ||||| ||||||||| | |||||||| |||||||||| Sbjct: 360 tacgaggaaggggcgggtggactggaggacttctgcgccatcaccattgatgggagcg 417
>ref|XM_483606.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3172 Score = 131 bits (66), Expect = 2e-27 Identities = 144/170 (84%) Strand = Plus / Plus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 293 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 352 Query: 336 aatggcgccgaggatgccgcggagcgcatgaagatggcgcaatccgagggcagggccatc 395 ||||||||||| ||| ||| ||||| ||||||| ||||||||||| ||| ||||| Sbjct: 353 aatggcgccgacgatcccggggagcatggcaagatggggcaatccgaggacagagccatg 412 Query: 396 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcga 445 ||| |||| | | ||| | ||||| || | |||||||||||||||||| Sbjct: 413 tacgaggacgggggtggaagactggatgattactgctcgatcaccatcga 462
>dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072L17, full insert sequence Length = 3173 Score = 131 bits (66), Expect = 2e-27 Identities = 144/170 (84%) Strand = Plus / Plus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 293 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 352 Query: 336 aatggcgccgaggatgccgcggagcgcatgaagatggcgcaatccgagggcagggccatc 395 ||||||||||| ||| ||| ||||| ||||||| ||||||||||| ||| ||||| Sbjct: 353 aatggcgccgacgatcccggggagcatggcaagatggggcaatccgaggacagagccatg 412 Query: 396 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcga 445 ||| |||| | | ||| | ||||| || | |||||||||||||||||| Sbjct: 413 tacgaggacgggggtggaagactggatgattactgctcgatcaccatcga 462
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 117 bits (59), Expect = 3e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 27209483 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 27209424 Query: 336 aatggcgccga 346 ||||||||||| Sbjct: 27209423 aatggcgccga 27209413
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1521_G02 Length = 117964 Score = 117 bits (59), Expect = 3e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 110516 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 110457 Query: 336 aatggcgccga 346 ||||||||||| Sbjct: 110456 aatggcgccga 110446
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 117 bits (59), Expect = 3e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 276 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgcctcgctccgcacc 335 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 32686 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 32627 Query: 336 aatggcgccga 346 ||||||||||| Sbjct: 32626 aatggcgccga 32616
>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete sequence Length = 134215 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 tccccccatcggcctccagcc 157 ||||||||||||||||||||| Sbjct: 120748 tccccccatcggcctccagcc 120768
>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete sequence Length = 129619 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 tccccccatcggcctccagcc 157 ||||||||||||||||||||| Sbjct: 17626 tccccccatcggcctccagcc 17646
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 ggcatcccgccgcctcctctc 46 ||||||||||||||||||||| Sbjct: 113989 ggcatcccgccgcctcctctc 114009
>ref|XM_308378.2| Anopheles gambiae str. PEST ENSANGP00000019052 (ENSANGG00000016563), partial mRNA Length = 2097 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 agatggcgcaatccgagggca 387 ||||||||||||||||||||| Sbjct: 2033 agatggcgcaatccgagggca 2013
>emb|Y18319.1|SLAP18319 Homo sapiens SLAP gene, clone SEQ.A1 Length = 2939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 tccccccatcggcctccagcc 157 ||||||||||||||||||||| Sbjct: 842 tccccccatcggcctccagcc 822
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccatcggcctccagccggcg 161 |||||||||||||||||||| Sbjct: 831695 ccatcggcctccagccggcg 831676
>ref|XM_366100.1| Magnaporthe grisea 70-15 hypothetical protein (MG10320.4) partial mRNA Length = 2169 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gcatcccgccgcctcctctc 46 |||||||||||||||||||| Sbjct: 46 gcatcccgccgcctcctctc 65
>gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome 9, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ccctagcccctccccccatc 146 |||||||||||||||||||| Sbjct: 188108 ccctagcccctccccccatc 188127
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 atcggcctccagccggcgct 163 |||||||||||||||||||| Sbjct: 119368 atcggcctccagccggcgct 119349
>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence Length = 188119 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ccctagcccctccccccatc 146 |||||||||||||||||||| Sbjct: 8133 ccctagcccctccccccatc 8152
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccatcggcctccagccggcg 161 |||||||||||||||||||| Sbjct: 145232 ccatcggcctccagccggcg 145213
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccatcggcctccagccggcg 161 |||||||||||||||||||| Sbjct: 164327 ccatcggcctccagccggcg 164308
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 atggcgccgaggatgccgcg 356 |||||||||||||||||||| Sbjct: 2772107 atggcgccgaggatgccgcg 2772126
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 agccccgccgccagatcccg 230 |||||||||||||||||||| Sbjct: 1991878 agccccgccgccagatcccg 1991859
>gb|U77912.1|MBU77912 Mycobacterium bovis MBE50a gene, partial cds; and MBE50b, MBE50c, preprotein translocase SecY subunit (secY), adenylate kinase (adk), methionine aminopeptidase (map), RNA polymerase ECF sigma factor (sigE50), MBE50d, and MBE50e genes, complete cds Length = 7163 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccatcggcctccagccggcg 161 |||||||||||||||||||| Sbjct: 6961 ccatcggcctccagccggcg 6942
>gb|AF478411.1| Chlamydomonas reinhardtii iron transporter Ftr1 (FTR1) mRNA, complete cds Length = 2833 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cggcctccagccggcgcttc 165 |||||||||||||||||||| Sbjct: 619 cggcctccagccggcgcttc 600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,503,340 Number of Sequences: 3902068 Number of extensions: 2503340 Number of successful extensions: 54872 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54463 Number of HSP's gapped (non-prelim): 407 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
