ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I mRNA, complete cds Length = 2647 Score = 718 bits (362), Expect = 0.0 Identities = 407/422 (96%), Gaps = 10/422 (2%) Strand = Plus / Plus Query: 15 ccagagcacgcacgctcgcacgctagccagccagc----agcaatggcgacggcggcgcg 70 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1 ccagagcacgcacgctcgcacgctagccagccagccagcagcaatggcgacggcggcgcg 60 Query: 71 cccaccgttcctggccatggccgcggcggcgctgctggtggcggcgtggtggggcggcaa 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cccaccgttcctggccatggccgcggcggcgctgctggtggcggcgtggtggggcggcaa 120 Query: 131 tgcggggacggcggaggcgcag------gcgccggtgttcgcgtgcgacgcgtcgaacgc 184 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 121 tgcgggggcggcggaggcgcaggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgc 180 Query: 185 gacgctggcggcctacgggttctgcaaccggaaggcgacggcgtcggcgcgcgccaggga 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gacgctggcggcctacgggttctgcaaccggaaggcgacggcgtcggcgcgcgccaggga 240 Query: 245 cctggtggcgcggctgacgctggcggagaaggtggggttcctggtgaacaagcagccggc 304 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cctagtgtcgcggctgacgctggcggagaaggtggggttcctggtgaacaagcagccggc 300 Query: 305 gctgggccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtc 364 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 301 gctgggccggctgggcatcccggcgtacgagtggtggtccgaagcgctgcacggcgtgtc 360 Query: 365 ctacgtcggccccggcacccgcttctcgccgctcgtgcccggcgccaccagcttcccgca 424 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 atacgtcggccccggcacccgcttctcgccgctcgtgcccggcgccaccagcttcccgca 420 Query: 425 gc 426 || Sbjct: 421 gc 422
>ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2298 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Plus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 75 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 134 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 135 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 193 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 194 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 253 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 254 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 313 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 314 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 355
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 148294 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 148235 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 148234 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 148176 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 148175 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 148116 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 148115 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 148056 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 148055 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 148014
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence Length = 126659 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 24581 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 24522 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 24521 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 24463 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 24462 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 24403 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 24402 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 24343 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 24342 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 24301
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 32629560 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 32629501 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 32629500 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 32629442 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 32629441 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 32629382 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 32629381 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 32629322 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 32629321 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 32629280 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 ggcgacggcgtcggcgcgcgccagg 242 |||||||||||||||| |||||||| Sbjct: 1768015 ggcgacggcgtcggcgagcgccagg 1767991
>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full insert sequence Length = 2821 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Plus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 243 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 302 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 303 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 361 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 362 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 421 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 422 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 481 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 482 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 523
>emb|AL732339.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0414F07, complete sequence Length = 50928 Score = 313 bits (158), Expect = 3e-82 Identities = 253/282 (89%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 146 ggcgcaggcgccggtgttcgcgtgcgacgcgtcgaacgcgacgctggcggcctacgggtt 205 ||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 2990 ggcgcagacgccggtgttcgcgtgcgacgcgtcgaacgcgacggtgtccgggtacgggtt 2931 Query: 206 ctgcaaccggaaggcga-cggcgtcggcgcgcgccagggacctggtggcgcggctgacgc 264 |||| |||||| | || | ||| ||||||| || ||||||| ||| | ||||||||| Sbjct: 2930 ctgcgaccggacgaagagcagcg-cggcgcgggcggcggacctgctggggaggctgacgc 2872 Query: 265 tggcggagaaggtggggttcctggtgaacaagcagccggcgctgggccggctgggcatcc 324 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 2871 tggcggagaaggtggggttcctggtgaacaagcaggcggcgctgccgcggctggggatcc 2812 Query: 325 cggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcaccc 384 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 2811 cggcgtacgagtggtggtcggaggcgctgcacggcgtctcctacgtcggccccggcaccc 2752 Query: 385 gcttctcgccgctcgtgcccggcgccaccagcttcccgcagc 426 |||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 2751 gcttctcgacgctcgtccccggcgccaccagcttcccgcagc 2710
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 87.7 bits (44), Expect = 3e-14 Identities = 106/124 (85%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 243 gacctggtggcgcggctgacgctggcggagaaggtggggttcctggtgaacaa-gcagcc 301 |||||||||||||||||||||| || ||||||||| || | ||||||||||| || ||| Sbjct: 48395 gacctggtggcgcggctgacgcgcgccgagaaggtgcggctgctggtgaacaacgccgcc 48336 Query: 302 ggcgctgggccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgt 361 |||| || ||||||||| || | | ||||||||||||||| |||||||| |||||||| Sbjct: 48335 ggcg-tgccgcggctgggcgtcgccgggtacgagtggtggtcggaggcgctccacggcgt 48277 Query: 362 gtcc 365 |||| Sbjct: 48276 gtcc 48273
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 3e-14 Identities = 106/124 (85%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 243 gacctggtggcgcggctgacgctggcggagaaggtggggttcctggtgaacaa-gcagcc 301 |||||||||||||||||||||| || ||||||||| || | ||||||||||| || ||| Sbjct: 26347093 gacctggtggcgcggctgacgcgcgccgagaaggtgcggctgctggtgaacaacgccgcc 26347034 Query: 302 ggcgctgggccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgt 361 |||| || ||||||||| || | | ||||||||||||||| |||||||| |||||||| Sbjct: 26347033 ggcg-tgccgcggctgggcgtcgccgggtacgagtggtggtcggaggcgctccacggcgt 26346975 Query: 362 gtcc 365 |||| Sbjct: 26346974 gtcc 26346971 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||||| ||||||||||| |||||||||| |||||||| ||||| Sbjct: 10871773 cggctgggcgtcccggcgtacaagtggtggtcggaggcgctccacgg 10871819 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 313 ggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||| ||||||| |||| |||||||||| |||||||||||||| Sbjct: 10834644 ggctggggatcccggtgtacaagtggtggtcggaggcgctgcacgg 10834689 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgggg 281 ||||||||||||| |||||||| |||||||||||||||| Sbjct: 10834573 ggacctggtggcgaggctgacgacggcggagaaggtgggg 10834612 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggc 359 ||||||||| | |||||||||||||||||||| |||| ||| |||||| Sbjct: 10481799 cggctgggcgtgccggcgtacgagtggtggtcggaggggctccacggc 10481752 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||||||||| |||||||| |||||||||||||| Sbjct: 10871703 ggacctggtggcgaggctgacggcggcggagaaggtgg 10871740 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 |||||||||| ||||||||||| |||||||||||||| Sbjct: 10514781 ggacctggtgtcgcggctgacggcggcggagaaggtgg 10514744 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcgt 117 ||||||||||||||||||||||||| Sbjct: 16690627 gcggcggcgctgctggtggcggcgt 16690651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 ctggccatggccgcggcggcg 101 ||||||||||||||||||||| Sbjct: 18561980 ctggccatggccgcggcggcg 18561960 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtg 278 ||||||||||||| ||||||||||| ||||||||| Sbjct: 10481869 ggacctggtggcgaacctgacgctggccgagaaggtg 10481833 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 324 ccggcgtacgagtggtggtccgaggcgctgca 355 ||||||||| ||||||||| ||||||||||| Sbjct: 27860194 ccggcgtacaggtggtggtcggaggcgctgca 27860225 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctgctggtgg 111 ||||| ||||||||||||||| |||||| Sbjct: 14977058 gccatcgccgcggcggcgctggtggtgg 14977085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 3e-14 Identities = 106/124 (85%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 243 gacctggtggcgcggctgacgctggcggagaaggtggggttcctggtgaacaa-gcagcc 301 |||||||||||||||||||||| || ||||||||| || | ||||||||||| || ||| Sbjct: 26660821 gacctggtggcgcggctgacgcgcgccgagaaggtgcggctgctggtgaacaacgccgcc 26660762 Query: 302 ggcgctgggccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgt 361 |||| || ||||||||| || | | ||||||||||||||| |||||||| |||||||| Sbjct: 26660761 ggcg-tgccgcggctgggcgtcgccgggtacgagtggtggtcggaggcgctccacggcgt 26660703 Query: 362 gtcc 365 |||| Sbjct: 26660702 gtcc 26660699 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||||| ||||||||||| |||||||||| |||||||| ||||| Sbjct: 10950962 cggctgggcgtcccggcgtacaagtggtggtcggaggcgctccacgg 10951008 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 313 ggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||| ||||||| |||| |||||||||| |||||||||||||| Sbjct: 10913833 ggctggggatcccggtgtacaagtggtggtcggaggcgctgcacgg 10913878 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgggg 281 ||||||||||||| |||||||| |||||||||||||||| Sbjct: 10913762 ggacctggtggcgaggctgacgacggcggagaaggtgggg 10913801 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggc 359 ||||||||| | |||||||||||||||||||| |||| ||| |||||| Sbjct: 10553343 cggctgggcgtgccggcgtacgagtggtggtcggaggggctccacggc 10553296 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||||||||| |||||||| |||||||||||||| Sbjct: 10950892 ggacctggtggcgaggctgacggcggcggagaaggtgg 10950929 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 |||||||||| ||||||||||| |||||||||||||| Sbjct: 10586325 ggacctggtgtcgcggctgacggcggcggagaaggtgg 10586288 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcgt 117 ||||||||||||||||||||||||| Sbjct: 16784450 gcggcggcgctgctggtggcggcgt 16784474 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 ctggccatggccgcggcggcg 101 ||||||||||||||||||||| Sbjct: 18721381 ctggccatggccgcggcggcg 18721361 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtg 278 ||||||||||||| ||||||||||| ||||||||| Sbjct: 10553413 ggacctggtggcgaacctgacgctggccgagaaggtg 10553377 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 324 ccggcgtacgagtggtggtccgaggcgctgca 355 ||||||||| ||||||||| ||||||||||| Sbjct: 27884182 ccggcgtacaggtggtggtcggaggcgctgca 27884213 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctgctggtgg 111 ||||| ||||||||||||||| |||||| Sbjct: 15058753 gccatcgccgcggcggcgctggtggtgg 15058780
>gb|AY029260.1| Hordeum vulgare beta-D-xylosidase mRNA, complete cds Length = 2546 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtg 362 |||||||||| | ||||||||| |||||||||| |||||||||||||||||| Sbjct: 282 ccggctgggcgtgccggcgtacaagtggtggtcggaggcgctgcacggcgtg 333
>ref|XM_467832.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2628 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 |||||| ||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||| Sbjct: 287 ccggctcggcgtcccggcgtacaagtggtggtcggaggcgctccacggcgtctccaacgc 346 Query: 371 cggccccggca 381 ||||| ||||| Sbjct: 347 cggccgcggca 357
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 |||||| ||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||| Sbjct: 31632376 ccggctcggcgtcccggcgtacaagtggtggtcggaggcgctccacggcgtctccaacgc 31632317 Query: 371 cggccccggca 381 ||||| ||||| Sbjct: 31632316 cggccgcggca 31632306 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 23532574 ggcggaggcgcaggcgccgg 23532593 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ggcggcgtggtggggcggca 129 |||||||||||||||||||| Sbjct: 896252 ggcggcgtggtggggcggca 896271
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 |||||| ||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||| Sbjct: 122936 ccggctcggcgtcccggcgtacaagtggtggtcggaggcgctccacggcgtctccaacgc 122877 Query: 371 cggccccggca 381 ||||| ||||| Sbjct: 122876 cggccgcggca 122866
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 |||||| ||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||| Sbjct: 12163 ccggctcggcgtcccggcgtacaagtggtggtcggaggcgctccacggcgtctccaacgc 12104 Query: 371 cggccccggca 381 ||||| ||||| Sbjct: 12103 cggccgcggca 12093
>dbj|AK119887.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H05, full insert sequence Length = 2628 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 311 ccggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 |||||| ||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||| Sbjct: 287 ccggctcggcgtcccggcgtacaagtggtggtcggaggcgctccacggcgtctccaacgc 346 Query: 371 cggccccggca 381 ||||| ||||| Sbjct: 347 cggccgcggca 357
>ref|NM_183652.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2457 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 345 gaggcgctgcacggcgtgtcctacgtcggccccggc 380 ||||||||||||||||||||| |||||||||||||| Sbjct: 331 gaggcgctgcacggcgtgtccgacgtcggccccggc 366 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 398 cgtgcccggcgccaccagcttcccgc 423 |||||||||||||||||||||||||| Sbjct: 387 cgtgcccggcgccaccagcttcccgc 412 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Plus Query: 241 gggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||| |||| |||| ||||||||| ||||||||||| Sbjct: 227 gggacctcgtggggcggatgacgctggaggagaaggtgg 265
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 345 gaggcgctgcacggcgtgtcctacgtcggccccggc 380 ||||||||||||||||||||| |||||||||||||| Sbjct: 10869876 gaggcgctgcacggcgtgtccgacgtcggccccggc 10869911 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 398 cgtgcccggcgccaccagcttcccgc 423 |||||||||||||||||||||||||| Sbjct: 10869932 cgtgcccggcgccaccagcttcccgc 10869957 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Plus Query: 241 gggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||| |||| |||| ||||||||| ||||||||||| Sbjct: 10869772 gggacctcgtggggcggatgacgctggaggagaaggtgg 10869810
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 345 gaggcgctgcacggcgtgtcctacgtcggccccggc 380 ||||||||||||||||||||| |||||||||||||| Sbjct: 56892 gaggcgctgcacggcgtgtccgacgtcggccccggc 56927 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 398 cgtgcccggcgccaccagcttcccgc 423 |||||||||||||||||||||||||| Sbjct: 56948 cgtgcccggcgccaccagcttcccgc 56973 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Plus Query: 241 gggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||| |||| |||| ||||||||| ||||||||||| Sbjct: 56788 gggacctcgtggggcggatgacgctggaggagaaggtgg 56826
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||||| ||||||||||| |||||||||| |||||||| ||||| Sbjct: 61293 cggctgggcgtcccggcgtacaagtggtggtcggaggcgctccacgg 61339 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 313 ggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||| ||||||| |||| |||||||||| |||||||||||||| Sbjct: 24164 ggctggggatcccggtgtacaagtggtggtcggaggcgctgcacgg 24209 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgggg 281 ||||||||||||| |||||||| |||||||||||||||| Sbjct: 24093 ggacctggtggcgaggctgacgacggcggagaaggtgggg 24132 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||||||||| |||||||| |||||||||||||| Sbjct: 61223 ggacctggtggcgaggctgacggcggcggagaaggtgg 61260
>dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D05, full insert sequence Length = 2714 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||||| ||||||||||| |||||||||| |||||||| ||||| Sbjct: 316 cggctgggcgtcccggcgtacaagtggtggtcggaggcgctccacgg 362 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 ||||||||||||| |||||||| |||||||||||||| Sbjct: 246 ggacctggtggcgaggctgacggcggcggagaaggtgg 283
>dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O20, full insert sequence Length = 2515 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 313 ggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacgg 358 ||||||| ||||||| |||| |||||||||| |||||||||||||| Sbjct: 303 ggctggggatcccggtgtacaagtggtggtcggaggcgctgcacgg 348 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgggg 281 ||||||||||||| |||||||| |||||||||||||||| Sbjct: 232 ggacctggtggcgaggctgacgacggcggagaaggtgggg 271
>gb|AC135601.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0051D22, complete sequence Length = 119919 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggc 359 ||||||||| | |||||||||||||||||||| |||| ||| |||||| Sbjct: 119127 cggctgggcgtgccggcgtacgagtggtggtcggaggggctccacggc 119174 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 |||||||||| ||||||||||| |||||||||||||| Sbjct: 86145 ggacctggtgtcgcggctgacggcggcggagaaggtgg 86182 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtg 278 ||||||||||||| ||||||||||| ||||||||| Sbjct: 119057 ggacctggtggcgaacctgacgctggccgagaaggtg 119093
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032D10 map E20933S, complete sequence Length = 146118 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 312 cggctgggcatcccggcgtacgagtggtggtccgaggcgctgcacggc 359 ||||||||| | |||||||||||||||||||| |||| ||| |||||| Sbjct: 105645 cggctgggcgtgccggcgtacgagtggtggtcggaggggctccacggc 105598 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 |||||||||| ||||||||||| |||||||||||||| Sbjct: 138627 ggacctggtgtcgcggctgacggcggcggagaaggtgg 138590 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtg 278 ||||||||||||| ||||||||||| ||||||||| Sbjct: 105715 ggacctggtggcgaacctgacgctggccgagaaggtg 105679
>ref|XM_364140.1| Magnaporthe grisea 70-15 hypothetical protein (MG08985.4) partial mRNA Length = 2379 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 324 ccggcgtacgagtggtggtccgaggcgctgcacgg 358 |||||||| ||||||||||||||||| |||||||| Sbjct: 238 ccggcgtatgagtggtggtccgaggccctgcacgg 272
>gb|AY486104.2| Fragaria x ananassa beta xylosidase (Xyl1) mRNA, complete cds Length = 2530 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 330 tacgagtggtggtccgaggcgctgcacggcgtgtcctacgtcggccccgg 379 |||||||||||||| |||||||| || ||||| ||| | ||||||||||| Sbjct: 262 tacgagtggtggtcggaggcgcttcatggcgtctccaatgtcggccccgg 311
>dbj|AK108558.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-A01, full insert sequence Length = 1199 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 242 ggacctggtggcgcggctgacgctggcggagaaggtgg 279 |||||||||| ||||||||||| |||||||||||||| Sbjct: 202 ggacctggtgtcgcggctgacggcggcggagaaggtgg 239
>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0047D03, complete sequence Length = 126165 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcgt 117 ||||||||||||||||||||||||| Sbjct: 71741 gcggcggcgctgctggtggcggcgt 71765
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcgt 117 ||||||||||||||||||||||||| Sbjct: 6242 gcggcggcgctgctggtggcggcgt 6266
>dbj|AK108872.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C10, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcgt 117 ||||||||||||||||||||||||| Sbjct: 129 gcggcggcgctgctggtggcggcgt 153
>dbj|AB234292.1| Raphanus sativus RsAraf1 mRNA for alpha-L-arabinofuranosidase, complete cds Length = 2444 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Plus Query: 336 tggtggtccgaggcgctgcacggcgtgtcctacgtcggccccggcacccgcttctc 391 ||||||||||| || || |||||||| || |||||||| |||||||| || ||||| Sbjct: 322 tggtggtccgaagcacttcacggcgtttcttacgtcggacccggcactcgtttctc 377
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcgg 114 |||||||||||||||||||||| Sbjct: 1635785 gcggcggcgctgctggtggcgg 1635806 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcggcgctgctggtggcggc 115 |||||||||||||||||||| Sbjct: 3493277 gcggcgctgctggtggcggc 3493258
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 ccgcggcggcgctgctggtggc 112 |||||||||||||||||||||| Sbjct: 2240842 ccgcggcggcgctgctggtggc 2240863
>ref|XM_957977.1| Neurospora crassa OR74A hypothetical protein (NCU05708.1) partial mRNA Length = 2898 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 126 ggcaatgcggggacggcggagg 147 |||||||||||||||||||||| Sbjct: 790 ggcaatgcggggacggcggagg 811
>ref|XM_325562.1| Neurospora crassa OR74A hypothetical protein (NCU05708.1) partial mRNA Length = 2898 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 126 ggcaatgcggggacggcggagg 147 |||||||||||||||||||||| Sbjct: 790 ggcaatgcggggacggcggagg 811
>gb|AY484967.1|AY484967S1 Homo sapiens type XVIII collagen gene, exons 1 and 2 Length = 1598 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 1481 cctggccatggccgcggcggcg 1502
>ref|NM_130445.1| Homo sapiens collagen, type XVIII, alpha 1 (COL18A1), transcript variant 2, mRNA Length = 5398 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 66 cctggccatggccgcggcggcg 87
>gb|AY328853.1| Vibrio parahaemolyticus phage VP16C, partial sequence Length = 47537 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcgg 114 |||||||||||||||||||||| Sbjct: 9559 gcggcggcgctgctggtggcgg 9580
>dbj|AB195230.1| Pyrus pyrifolia PpARF2 mRNA for alpha-L-arabinofuranosidase / beta-D-xylosidase, complete cds Length = 2575 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 329 gtacgagtggtggtccgaggcgctgcacggcgtgtcctacgt 370 ||||||||||||||| |||||||| || || |||||| |||| Sbjct: 297 gtacgagtggtggtctgaggcgcttcatggtgtgtccaacgt 338
>gb|BC063833.1| Homo sapiens collagen, type XVIII, alpha 1, transcript variant 2, mRNA (cDNA clone MGC:74745 IMAGE:6181818), complete cds Length = 4230 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 52 cctggccatggccgcggcggcg 73
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 95 ggcggcgctgctggtggcggcgtggt 120 |||||||||||||||||||| ||||| Sbjct: 199094 ggcggcgctgctggtggcggtgtggt 199069 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ggcgacggcgtcggcgcgcgc 238 ||||||||||||||||||||| Sbjct: 1575787 ggcgacggcgtcggcgcgcgc 1575767 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgct 103 |||||||||||||||||||| Sbjct: 4454583 gccatggccgcggcggcgct 4454602 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ggcgacggcgtcggcgcgcg 237 |||||||||||||||||||| Sbjct: 1259966 ggcgacggcgtcggcgcgcg 1259985
>dbj|AK130835.1| Homo sapiens cDNA FLJ27325 fis, clone TMS08226, highly similar to Collagen alpha 1(XVIII) chain precursor Length = 1388 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 106 cctggccatggccgcggcggcg 127
>emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102 Length = 340000 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 104155 cctggccatggccgcggcggcg 104176
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 89 ggccgcggcggcgctgctggtg 110 |||||||||||||||||||||| Sbjct: 3914442 ggccgcggcggcgctgctggtg 3914463 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ggccgcggcggcgctgctgg 108 |||||||||||||||||||| Sbjct: 4742001 ggccgcggcggcgctgctgg 4742020
>gb|AF018082.1|AF018082 Homo sapiens type XVIII collagen (COL18A1) mRNA, alternatively spliced, short form, complete cds Length = 5408 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 76 cctggccatggccgcggcggcg 97
>emb|BX322562.1|HSQ21A11 Homo sapiens chromosome 21 from cosmid LL21NC02-21A1 map 21q22.3 region D21S171-LA161, complete sequence Length = 45600 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 cctggccatggccgcggcggcg 101 |||||||||||||||||||||| Sbjct: 22619 cctggccatggccgcggcggcg 22640
>emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on chromosome 11, complete sequence Length = 144136 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 20 gcacgcacgctcgcacgctagccagccagc 49 |||||||||| ||||||| ||||||||||| Sbjct: 116207 gcacgcacgcacgcacgccagccagccagc 116236
>ref|XM_471136.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 ggcgacggcgtcggcgcgcgccagg 242 |||||||||||||||| |||||||| Sbjct: 463 ggcgacggcgtcggcgagcgccagg 487
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 cgtcgaacgcgacgctggcgg 195 ||||||||||||||||||||| Sbjct: 2070828 cgtcgaacgcgacgctggcgg 2070808
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 ctggccatggccgcggcggcg 101 ||||||||||||||||||||| Sbjct: 141295 ctggccatggccgcggcggcg 141275
>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete sequence Length = 149449 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 ggcgacggcgtcggcgcgcgccagg 242 |||||||||||||||| |||||||| Sbjct: 110967 ggcgacggcgtcggcgagcgccagg 110943
>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09, complete sequence Length = 155672 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 ggcgacggcgtcggcgcgcgccagg 242 |||||||||||||||| |||||||| Sbjct: 63282 ggcgacggcgtcggcgagcgccagg 63258
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 tggtggcgcggctgacgctgg 267 ||||||||||||||||||||| Sbjct: 890785 tggtggcgcggctgacgctgg 890765
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cagcaatggcgacggcggcgc 69 ||||||||||||||||||||| Sbjct: 17096760 cagcaatggcgacggcggcgc 17096740
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctg 104 ||||||||||||||||||||| Sbjct: 29324790 gccatggccgcggcggcgctg 29324810
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctg 104 ||||||||||||||||||||| Sbjct: 35671 gccatggccgcggcggcgctg 35691
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 ccgcggcggcgctgctggtggcggc 115 ||||||||||||||||| ||||||| Sbjct: 6358083 ccgcggcggcgctgctgatggcggc 6358107
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctg 104 ||||||||||||||||||||| Sbjct: 87588 gccatggccgcggcggcgctg 87608
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cagcaatggcgacggcggcgc 69 ||||||||||||||||||||| Sbjct: 49886 cagcaatggcgacggcggcgc 49866
>ref|NM_209046.1| Eremothecium gossypii ACR291Cp (ACR291C), mRNA Length = 2055 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 tggtggcgcggctgacgctgg 267 ||||||||||||||||||||| Sbjct: 197 tggtggcgcggctgacgctgg 217
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 cgcggcggcgctgctggtggcggcg 116 ||||||||||||| ||||||||||| Sbjct: 2947471 cgcggcggcgctggtggtggcggcg 2947447
>dbj|AK064899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L13, full insert sequence Length = 2429 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctg 104 ||||||||||||||||||||| Sbjct: 1856 gccatggccgcggcggcgctg 1876
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 ccggcgccaccagcttcccgc 423 ||||||||||||||||||||| Sbjct: 822462 ccggcgccaccagcttcccgc 822442 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgacggcggcgcgcccaccg 77 |||||||||||||||||||| Sbjct: 2208776 cgacggcggcgcgcccaccg 2208757
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cggcgcgcgccagggacctgg 249 ||||||||||||||||||||| Sbjct: 1531109 cggcgcgcgccagggacctgg 1531129
>gb|U46071.1|RCU46071 Rhodobacter capsulatus cytochrome c biogenesis (cycH) gene, complete cds, and sarcosine oxidase gene, partial cds Length = 3164 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 88 tggccgcggcggcgctgctggtggcggcg 116 |||| |||||||||||| ||||||||||| Sbjct: 1141 tggcggcggcggcgctggtggtggcggcg 1169
>dbj|AB015725.1| Aeromonas caviae gene for aminopeptidase, complete cds Length = 3949 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 ctgcaaccggaaggcgacggcgtcg 230 ||||||||||| ||||||||||||| Sbjct: 2523 ctgcaaccggatggcgacggcgtcg 2547
>gb|AC151752.1| Ornithorhynchus anatinus chromosome UNK clone OABb-503A1, complete sequence Length = 132108 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggggaggggagagccagagc 21 |||||||||||||||||||| Sbjct: 13182 ggggaggggagagccagagc 13163
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggtggcgcggctgacgctgg 267 |||||||||||||||||||| Sbjct: 2368678 ggtggcgcggctgacgctgg 2368659
>ref|XM_523965.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC468576), mRNA Length = 2742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||||||||| |||||||| Sbjct: 2270 gcggcggcgctgctgctggcggcg 2293
>ref|XM_475945.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ggccatggccgcggcggcgc 102 |||||||||||||||||||| Sbjct: 777 ggccatggccgcggcggcgc 758
>ref|XM_466579.1| Oryza sativa (japonica cultivar-group), mRNA Length = 611 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 85 ggcggaggcgcaggcgccgg 104
>gb|DQ213429.1| Taeniopygia guttata clone 0058P0001G10 tetratricopeptide repeat domain 1 protein-like mRNA, complete sequence Length = 746 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 |||||||||||||||| ||||||| Sbjct: 34 gcggcggcgctgctggcggcggcg 57
>ref|XM_463882.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ggcggcgtggtggggcggca 129 |||||||||||||||||||| Sbjct: 180 ggcggcgtggtggggcggca 199
>gb|AC147352.2| Xenopus tropicalis clone CH216-157J16, complete sequence Length = 141579 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ggaggggagagccagagcacgcac 27 ||||||||||| |||||||||||| Sbjct: 140930 ggaggggagagacagagcacgcac 140907
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 33973 ggcgacggcggcgcgcccac 33992
>gb|AY599248.1| Homo sapiens downstream of tyrosine kinase 6 (DOK6) mRNA, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||||||||| |||||||| Sbjct: 74 gcggcggcgctgctgctggcggcg 97
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 4176277 ggcgacggcggcgcgcccac 4176296
>ref|XM_869638.1| PREDICTED: Bos taurus similar to Runt-related transcription factor 3 (Core-binding factor, alpha 3 subunit) (CBF-alpha 3) (Acute myeloid leukemia 2 protein) (Oncogene AML-2) (Polyomavirus enhancer binding protein 2 alpha C subunit) (PEBP2-alpha C) (PEA2-alpha C) (SL3-3 ... (LOC617389), mRNA Length = 1681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ccgcggcggcgctgctggtg 110 |||||||||||||||||||| Sbjct: 1219 ccgcggcggcgctgctggtg 1200
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 168 tgcgacgcgtcgaacgcgacgctggcgg 195 |||| |||||||| |||||||||||||| Sbjct: 43679 tgcggcgcgtcgatcgcgacgctggcgg 43706
>ref|XM_422022.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ11457 (LOC424176), mRNA Length = 4209 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggcgctgggccggctgggca 321 |||||||||||||||||||| Sbjct: 279 ggcgctgggccggctgggca 298
>ref|NM_001024618.1| Mus musculus cardiomyopathy associated 3 (Cmya3), mRNA Length = 11956 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tggggttcctggtgaacaag 296 |||||||||||||||||||| Sbjct: 9078 tggggttcctggtgaacaag 9059
>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11, complete sequence Length = 112796 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ggccatggccgcggcggcgc 102 |||||||||||||||||||| Sbjct: 49586 ggccatggccgcggcggcgc 49605
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gtccgaggcgctgcacggcg 360 |||||||||||||||||||| Sbjct: 645773 gtccgaggcgctgcacggcg 645754
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ccgaggcgctgcacggcgtg 362 |||||||||||||||||||| Sbjct: 77357 ccgaggcgctgcacggcgtg 77376
>ref|NM_152721.2| Homo sapiens docking protein 6 (DOK6), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||||||||| |||||||| Sbjct: 74 gcggcggcgctgctgctggcggcg 97
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 gccatggccgcggcggcgctgctggtgg 111 ||||| ||||||||||||||| |||||| Sbjct: 86845 gccatcgccgcggcggcgctggtggtgg 86872
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 acgctcgcacgctagccagccagc 49 |||| ||||||||||||||||||| Sbjct: 17574637 acgcacgcacgctagccagccagc 17574660
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 acgctcgcacgctagccagccagc 49 |||| ||||||||||||||||||| Sbjct: 80440 acgcacgcacgctagccagccagc 80417
>gb|AC146155.3| Pan troglodytes BAC clone RP43-37F3 from 7, complete sequence Length = 159409 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 113967 ggcggaggcgcaggcgccgg 113948
>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence Length = 230221 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 gggaggggagagccagagcacgca 26 |||||||||||| ||||||||||| Sbjct: 124773 gggaggggagagacagagcacgca 124750
>gb|AC005251.1| Homo sapiens BAC clone CTA-324D18 from 7, complete sequence Length = 92636 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 12483 ggcggaggcgcaggcgccgg 12502
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 2944221 cggcgctgctggtggcggcg 2944202 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gcgcggctgacgctggcgga 271 |||||||||||||||||||| Sbjct: 477342 gcgcggctgacgctggcgga 477361
>ref|XM_500185.1| Yarrowia lipolytica CLIB122, YALI0A18007g predicted mRNA Length = 1596 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tacgggttctgcaaccggaa 217 |||||||||||||||||||| Sbjct: 185 tacgggttctgcaaccggaa 166
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 |||||| ||||||||||||||||| Sbjct: 363512 gcggcgacgctgctggtggcggcg 363535
>gb|BT009224.1| Triticum aestivum clone wle1n.pk0076.h7:fis, full insert mRNA sequence Length = 1874 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tggccatggccgcggcggcg 101 |||||||||||||||||||| Sbjct: 563 tggccatggccgcggcggcg 544
>emb|Z25774.2|LDMOFA Leptothrix discophora mof operon and flanking genes Length = 9413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ggcgcaggcgccggtgttcg 165 |||||||||||||||||||| Sbjct: 8524 ggcgcaggcgccggtgttcg 8543
>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13 Length = 244800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 17232 ggcgacggcggcgcgcccac 17251
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcgctgctggtggcggcgtg 118 ||||||||||||||||||| |||| Sbjct: 118660 ggcggcgctgctggtggcgtcgtg 118683
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gacctggtggcgcggctgac 262 |||||||||||||||||||| Sbjct: 186858 gacctggtggcgcggctgac 186839
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcgctgctggtggcggcgtg 118 ||||||||||||||||||| |||| Sbjct: 71282 ggcggcgctgctggtggcgtcgtg 71305
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcgctgctggtggcggcgtg 118 ||||||||||||||||||| |||| Sbjct: 337431 ggcggcgctgctggtggcgtcgtg 337454
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggtggcgcggctgacgctgg 267 |||||||||||||||||||| Sbjct: 206366 ggtggcgcggctgacgctgg 206347
>gb|BC096744.1| Homo sapiens docking protein 6, mRNA (cDNA clone MGC:104528 IMAGE:5260167), complete cds Length = 1960 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||||||||| |||||||| Sbjct: 69 gcggcggcgctgctgctggcggcg 92
>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14 Length = 278492 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 54424 ggcgacggcggcgcgcccac 54443
>gb|AY043236.1| Vitis vinifera putative cellulase CEL1 mRNA, partial cds Length = 413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 agaaggtggggttcctggtg 290 |||||||||||||||||||| Sbjct: 42 agaaggtggggttcctggtg 23
>emb|AL591113.14| Mouse DNA sequence from clone RP23-253E9 on chromosome 11 Contains a phosphoglycerate mutase (Pgam) family pseudogene, a pseudogene similar to part of chondroitin sulfate proteoglycan 6 Cspg6, the gene for a novel protein similar to human DSCAM-interacting protein 1, a novel gene, the Crlf3 gene for cytokine receptor-like factor 3, the 5' end of a novel gene and a CpG island, complete sequence Length = 204106 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gctagccagccagcagcaat 55 |||||||||||||||||||| Sbjct: 8161 gctagccagccagcagcaat 8142
>gb|AF375756.1| Sus scrofa microsatellite UMNp160 sequence Length = 1219 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggggaggggagagccagagc 21 |||||||||||||||||||| Sbjct: 812 ggggaggggagagccagagc 793
>gb|AC091694.9| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-316F3, Complete Sequence, complete sequence Length = 213119 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aggggaggggagagccagag 20 |||||||||||||||||||| Sbjct: 3067 aggggaggggagagccagag 3086
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gctggcggagaaggtggggt 282 |||||||||||||||||||| Sbjct: 2332609 gctggcggagaaggtggggt 2332590
>gb|AE005973.1| Caulobacter crescentus CB15 section 299 of 359 of the complete genome Length = 10123 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gcggcggcgctgctggtggcggcg 116 |||||||||| ||||||||||||| Sbjct: 6648 gcggcggcgccgctggtggcggcg 6625
>gb|AE005930.1| Caulobacter crescentus CB15 section 256 of 359 of the complete genome Length = 11374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 8475 cggcgctgctggtggcggcg 8456
>gb|AF389866.1|AF389866 Pseudomonas aeruginosa periplasmic aminotransferase gene, complete cds Length = 1125 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 243 gacctggtggcgc-ggctgacgctggcg 269 ||||||||||||| |||||||||||||| Sbjct: 1113 gacctggtggcgccggctgacgctggcg 1086
>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence Length = 172798 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||||||||| |||||||| Sbjct: 121462 gcggcggcgctgctgctggcggcg 121485
>gb|DQ323513.1| Sphingomonadaceae bacterium Y2 hypothetical sugar transporter gene, partial cds; beta-peptidyl aminopeptidase precursor (bapA) gene, complete cds; and hypothetical threonine dehydratase gene, partial cds Length = 2403 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 669 cggcgctgctggtggcggcg 688
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 catggccgcggcggcgctgctggtggcg 113 ||||| ||| |||||||||||||||||| Sbjct: 250277 catggtcgccgcggcgctgctggtggcg 250304
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcggcggcgctgctggtggcggcg 116 |||||||||||| ||||||||||| Sbjct: 351886 gcggcggcgctggtggtggcggcg 351909 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 gacgcgtcgaacgcgacgctggcg 194 |||||| ||||||||||||||||| Sbjct: 234592 gacgcggcgaacgcgacgctggcg 234569
>gb|AC005250.1| Homo sapiens BAC clone CTA-318M5 from 7, complete sequence Length = 94336 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aggggaggggagagccagag 20 |||||||||||||||||||| Sbjct: 43735 aggggaggggagagccagag 43754
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 111960 ggcgacggcggcgcgcccac 111941
>gb|M69129.1|CCRHFAB Caulobacter crescentus transcriptional activator (hfaA) and hfaB (hfaB) genes, complete cds Length = 1729 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 30 cggcgctgctggtggcggcg 11
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 ggccatggccgcggcggcgctgctggtg 110 ||||| |||| ||||||||||||||||| Sbjct: 13890437 ggccacggccacggcggcgctgctggtg 13890464
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ggccatggccgcggcggcgc 102 |||||||||||||||||||| Sbjct: 28730873 ggccatggccgcggcggcgc 28730892 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggcgacggcggcgcgcccac 75 |||||||||||||||||||| Sbjct: 2755647 ggcgacggcggcgcgcccac 2755666
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 acgctcgcacgctagccagccagc 49 |||| ||||||||||||||||||| Sbjct: 17568178 acgcacgcacgctagccagccagc 17568201
>gb|DQ011666.1| Mus musculus XIN2 (Xin2) mRNA, complete cds Length = 11956 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tggggttcctggtgaacaag 296 |||||||||||||||||||| Sbjct: 9078 tggggttcctggtgaacaag 9059
>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence Length = 153731 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aggggaggggagagccagag 20 |||||||||||||||||||| Sbjct: 91450 aggggaggggagagccagag 91431
>gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence Length = 7479 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gcggcggcgctgctggtggcggcg 116 ||||||||| |||||||||||||| Sbjct: 4786 gcggcggcggtgctggtggcggcg 4763
>gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, complete sequence Length = 202568 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ggtggggcggcaatgcgggg 137 |||||||||||||||||||| Sbjct: 162912 ggtggggcggcaatgcgggg 162893
>gb|AE004681.1| Pseudomonas aeruginosa PAO1, section 242 of 529 of the complete genome Length = 11002 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 243 gacctggtggcgc-ggctgacgctggcg 269 ||||||||||||| |||||||||||||| Sbjct: 1241 gacctggtggcgccggctgacgctggcg 1214
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 cgcggcggcgctgctggtggcggc 115 |||||||||||||||| ||||||| Sbjct: 3452706 cgcggcggcgctgctgctggcggc 3452729 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 cgacggcgtcggcgcgcgcc 239 |||||||||||||||||||| Sbjct: 2643606 cgacggcgtcggcgcgcgcc 2643625 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gccgcggcggcgctgctggtggcg 113 ||||||||||||||||||| |||| Sbjct: 197290 gccgcggcggcgctgctggcggcg 197313
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ggcggcgtggtggggcggca 129 |||||||||||||||||||| Sbjct: 105460 ggcggcgtggtggggcggca 105479
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 3876494 cggcgctgctggtggcggcg 3876475 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 ggaaggcgacggcgtcggcgcgcgccag 241 |||||||| |||||||||||||| |||| Sbjct: 3575833 ggaaggcgtcggcgtcggcgcgcaccag 3575806
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 ggccatggccgcggcggcgctgctggtg 110 ||||| |||| ||||||||||||||||| Sbjct: 44114 ggccacggccacggcggcgctgctggtg 44141
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 98257 ggcggaggcgcaggcgccgg 98276
>gb|AY298951.1| Chlamydomonas reinhardtii long flagella (LF1) gene, complete cds Length = 7227 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggccgcggcggcgctgctgg 108 |||||||||||||||||||| Sbjct: 3647 ggccgcggcggcgctgctgg 3628
>emb|AL929411.11| Mouse DNA sequence from clone RP23-353O20 on chromosome 2, complete sequence Length = 149594 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tggggttcctggtgaacaag 296 |||||||||||||||||||| Sbjct: 94122 tggggttcctggtgaacaag 94103
>dbj|AK111034.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H12, full insert sequence Length = 611 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcggaggcgcaggcgccgg 159 |||||||||||||||||||| Sbjct: 85 ggcggaggcgcaggcgccgg 104
>dbj|AK109090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence Length = 1233 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ggccatggccgcggcggcgc 102 |||||||||||||||||||| Sbjct: 887 ggccatggccgcggcggcgc 868
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcggcgctgctggtggcggc 115 |||||||||||||||||||| Sbjct: 752872 gcggcgctgctggtggcggc 752891
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 gcgctgggccggctgggcatcccg 326 ||||||| |||||||||||||||| Sbjct: 704067 gcgctggtccggctgggcatcccg 704090
>dbj|AK064929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O03, full insert sequence Length = 1483 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ggcggcgtggtggggcggca 129 |||||||||||||||||||| Sbjct: 180 ggcggcgtggtggggcggca 199
>gb|AF058792.1|AF058792 Caulobacter crescentus HFA-A (hfaA) gene, complete cds Length = 666 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcgctgctggtggcggcg 116 |||||||||||||||||||| Sbjct: 30 cggcgctgctggtggcggcg 11
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggcgacggcgtcggcgcgcg 237 |||||||||||||||||||| Sbjct: 1477298 ggcgacggcgtcggcgcgcg 1477279
>gb|AE001826.1| Deinococcus radiodurans R1 plasmid MP1, complete sequence Length = 177466 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cgaggcgctgcacggcgtgt 363 |||||||||||||||||||| Sbjct: 129640 cgaggcgctgcacggcgtgt 129659
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ccgaggcgctgcacggcgtg 362 |||||||||||||||||||| Sbjct: 77275 ccgaggcgctgcacggcgtg 77294
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tacgggttctgcaaccggaa 217 |||||||||||||||||||| Sbjct: 1874535 tacgggttctgcaaccggaa 1874516
>emb|AL627205.12| Mouse DNA sequence from clone RP23-41E14 on chromosome 11, complete sequence Length = 223794 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aggggaggggagagccagag 20 |||||||||||||||||||| Sbjct: 8386 aggggaggggagagccagag 8367
>emb|AL831790.3| Mouse DNA sequence from clone RP23-334I5 on chromosome 4, complete sequence Length = 206074 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 2 ggggaggggagagccagagcacgcacgc 29 ||||||||||||| ||||||||||||| Sbjct: 108973 ggggaggggagagagagagcacgcacgc 108946 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,186,758 Number of Sequences: 3902068 Number of extensions: 3186758 Number of successful extensions: 97887 Number of sequences better than 10.0: 146 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 89809 Number of HSP's gapped (non-prelim): 8077 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
