ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03e07 |
|---|---|
| Clone Library Name | barley_pub |
>CABIN_HUMAN (Q9Y6J0) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2220 Score = 32.0 bits (71), Expect = 0.82 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 219 KPRSSLTQPAPSSTA--TVLACPPRLASSSYRVTRTPSPP 106 +P + T+P P+ A T++ CPP ++S+ ++ P PP Sbjct: 1958 RPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPP 1997
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 282 STPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPSPPL 103 +TPSP + I + T P ++ P P++T T PP + S T TPSPP+ Sbjct: 1616 TTPSPPTTTPITPPTS--TTTLPPTTTPSPPPTTTTT----PPPTTTPSPPTTTTPSPPI 1669 Query: 102 AVSS 91 ++ Sbjct: 1670 TTTT 1673 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -2 Query: 282 STPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPSPP 106 +TPSP + I + T P ++ P P++T T PP + S T TPSPP Sbjct: 1537 TTPSPPTTTPITPPTS--TTTLPPTTTPSPPPTTTTT----PPPTTTPSPPTTTTPSPP 1589 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 291 LSISTPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPS 112 L +TPSP I T T P T P+P +T PP +++ T TPS Sbjct: 1449 LPTTTPSPP----ISTTTTPPPTTTPSPPTTTPSPPTTTP---SPPTTTTTTPPPTTTPS 1501 Query: 111 PPL 103 PP+ Sbjct: 1502 PPM 1504 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = -2 Query: 216 PRSSLTQPAPSST----ATVLACPPRLASSSYRVTRTPSPPLAVSS 91 P ++ T P P++T T PP + +++ T TPSPP ++ Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTT 1610 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 201 TQPAPSSTATVLACPPRLASSSYRVTRTPSPP 106 T PS T PP + S +T TPSPP Sbjct: 1661 TTTTPSPPITTTTTPPPTTTPSSPITTTPSPP 1692 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = -2 Query: 282 STPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPSPPL 103 +TPSP + +T T P ++ PSS T PP ++ T TPS P+ Sbjct: 1655 TTPSPPTTTTPSPPITTTTTPPPTTT-----PSSPITTTPSPPTTTMTTPSPTTTPSSPI 1709 Query: 102 AVSS 91 ++ Sbjct: 1710 TTTT 1713
>YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'region (ORF1)| Length = 735 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -1 Query: 259 FHHSRICNLVEDHEAEVELDAAGAVIDGHRPGVPAEAGLLLVQGHSHAVSPAGGE 95 FH R+ +L + HEAE AA VID RPG+ A + +G ++ AGG+ Sbjct: 41 FHLQRV-SLFQVHEAEGRGIAATCVIDWRRPGLAFPA---MTEGSHPPLTAAGGD 91
>MCM3A_HUMAN (O60318) 80 kda MCM3-associated protein (GANP protein)| Length = 1980 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -2 Query: 297 SDLSISTPSPSNHSII--RGYVTWLKTMKPRSSLTQ------PAPSSTATVLACPPRLAS 142 ++L +ST P + ++ RG ++ P SSL Q P+P VLA P +A Sbjct: 996 AELPVSTQRPGSDTVGGGRGEECGVEPDAPLSSLPQSLPAPAPSPVPLPPVLALTPSVAP 1055 Query: 141 SSYRVTRTPSPP 106 S ++++ P PP Sbjct: 1056 SLFQLSVQPEPP 1067
>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)| (Receptor-linked protein-tyrosine phosphatase 99A) (DPTP99A) Length = 1301 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Frame = -2 Query: 276 PSPSNHSIIRGYVTWL---------KTMKPRSSLTQPAPSSTATVLACPPRLASSS 136 P P +H+++R + L T P +S P+ S TV + PP ASSS Sbjct: 2 PRPQHHALLRAMLKLLLFASIAEHCATALPTNSSNSPSSPSPFTVASLPPTTASSS 57
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 216 PRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPSPPLA 100 P + L P P++ TV+ PP + +++ PSPP A Sbjct: 222 PAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
>RNC_NITEU (Q820I0) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +2 Query: 89 HELTASGGDGVRVTLYEEEASLGGHAR----TVAVDDGAGCVKLDLGFMVFNQV 238 H L ++ G G + L E E GGH R AV+ G + L+ GF V QV Sbjct: 100 HRLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIGAIYLESGFAVVEQV 153
>SYR_CHLTE (Q8KGF3) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 551 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 280 NPESF*PFHHSRICNLVEDHEAEVELDAAGAV 185 NP + + H+RIC+LV E EV D A A+ Sbjct: 425 NPVFYLQYAHARICSLVRMAEKEVGFDEATAI 456
>HXB2A_BRARE (O42367) Homeobox protein Hox-B2a (Hox-B2)| Length = 390 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -2 Query: 234 WLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPSP 109 W+K K SS P P +TA A P ASS Y SP Sbjct: 106 WMKEKK--SSKKCPKPGATAAAAAASPSQASSGYTTAGLESP 145
>PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (Fragment) Length = 632 Score = 29.3 bits (64), Expect = 5.3 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Frame = -2 Query: 315 LTEKDMSDLSIS--TPSPSNHSIIRGYVTWLKTMKPRSSLT-----QPAPSSTATVLACP 157 LT M++LS++ T S SN++ T + T P SS P+PS++A+ Sbjct: 373 LTSAAMTNLSLTGTTDSTSNNT-----ATVISTAPPASSAVTSPSLSPSPSASASTSEAS 427 Query: 156 PRLASSSYRVTRTPSP-PLAVS 94 +S+ + T TP P PL S Sbjct: 428 SASETSTTQTTSTPLPSPLGAS 449
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 276 PSPSNHSIIRGYVTWL-KTMKPRSSLTQPAPSSTATVLACPP 154 PSPS+ + ++ Y+ W KT K + T P+S CPP Sbjct: 31 PSPSDFTDLKNYIHWFHKTQKKPWTFTSGGPTS------CPP 66
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 276 PSPSNHSIIRGYVTWL-KTMKPRSSLTQPAPSSTATVLACPP 154 PSPS+ + ++ Y+ W KT K + T P+S CPP Sbjct: 31 PSPSDFTDLKNYIHWFHKTQKKPWTFTSGGPAS------CPP 66
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = -2 Query: 297 SDLSISTPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRT 118 S S ++ SPS+ + + + P SS +PSS+A+ + P ASSS + + Sbjct: 451 SGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSS 510 Query: 117 PSPPLAVSS 91 S A SS Sbjct: 511 ASSSSAPSS 519
>MUC15_MOUSE (Q8C6Z1) Mucin-15 precursor| Length = 331 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -2 Query: 303 DMSDLSISTPSPSNHS----IIRGYVTWLKTMKPRSSLTQPAPSSTATV 169 D+S+L ++TPSP N S TWL T SS PSST +V Sbjct: 62 DISNLMVTTPSPLNLSTTFRTTNSTRTWLMTSSSESS----RPSSTYSV 106
>DREB_RAT (Q07266) Drebrin (Developmentally-regulated brain protein)| Length = 706 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = -2 Query: 288 SISTPSPSNHSIIRGYVTWLKTMKPRSSLTQPAPSSTATVLACPPRLASSSYRVTRTPS 112 S PSP NH R Y ++K + PSS+++ + PPR RTP+ Sbjct: 306 SCDAPSPFNHRPGRPYCPFIKA-------SDSGPSSSSSSSSSPPRTPFPYITCHRTPN 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,567,141 Number of Sequences: 219361 Number of extensions: 1029508 Number of successful extensions: 3383 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3358 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
