ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CR1FA_BACTA (Q03746) Pesticidal crystal protein cry1Fa (Insectic... 31 1.5
2CR1FB_BACTM (O66377) Pesticidal crystal protein cry1Fb (Insectic... 31 1.5
3TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 hom... 31 2.0
4ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disint... 30 2.6
5SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (A... 30 3.3
6YPC2_ECOLI (P18128) Hypothetical 26.4 kDa protein (ORF 245) 29 5.7
7SEY1_CRYNE (Q5K8P4) Protein SEY1 29 5.7
8PLDP2_ARATH (Q9M9W8) Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (... 29 7.5
9CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 29 7.5

>CR1FA_BACTA (Q03746) Pesticidal crystal protein cry1Fa (Insecticidal|
           delta-endotoxin CryIF(a)) (Crystaline entomocidal
           protoxin) (134 kDa crystal protein)
          Length = 1174

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 280 DPRPRSRALGDPLLL-GPFGAPHLLVGV 360
           DPRP  R L DP+ + G FG PH ++G+
Sbjct: 351 DPRPFYRTLSDPVFVRGGFGNPHYVLGL 378



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>CR1FB_BACTM (O66377) Pesticidal crystal protein cry1Fb (Insecticidal|
           delta-endotoxin CryIF(b)) (Crystaline entomocidal
           protoxin) (132 kDa crystal protein)
          Length = 1169

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 280 DPRPRSRALGDPLLL-GPFGAPHLLVGV 360
           DPRP  R L DP+ + G FG PH ++G+
Sbjct: 351 DPRPFYRTLSDPVFVRGGFGNPHYVLGL 378



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>TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 homolog|
           (Intermediate chain 1)
          Length = 837

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
 Frame = -3

Query: 459 PGGDPENDVGAEVFFEPSTQFSAISVLYIHLK*NSDEQVGGAERSE------EQGVAQSP 298
           PGG+ ++ V            ++IS+    +K   +E  GG E++E      E+  A+ P
Sbjct: 629 PGGEVKDSV------------ASISMEQSQVKGEGEE--GGEEQTEQPAGEGEEQQAEQP 674

Query: 297 AAWTGVQGREGW------------RRAHTPAAQGGRKPVARE 208
           AA +G Q  EG             ++A  P A+GG KP   E
Sbjct: 675 AAESGEQQAEGGEPATETATEGGEQQAEQPPAEGGEKPAEEE 716



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>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1210

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 236 CAAGVCARRQPSLPWTPVHAAGLWATPCSSDRSAPPTCSS 355
           C AG C RR P+    P H AG W+   S  RS     SS
Sbjct: 623 CKAGECTRRTPA----PEHLAGEWSPWSSCSRSCSSGVSS 658



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>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 357 SDEQVGGAERSEEQGVAQSPAAWTGVQGREGWRRAHTPAAQGGRKPVAREM 205
           S E   G+  +  +    + +  TG Q +EG + A  PA QG +KP  + +
Sbjct: 652 SHENSQGSSHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSL 702



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>YPC2_ECOLI (P18128) Hypothetical 26.4 kDa protein (ORF 245)|
          Length = 245

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
 Frame = +2

Query: 221 GFRPPCAAGVCARRQPSLP-----WTPVHAAG 301
           G RPPC A V     P+LP     W   H AG
Sbjct: 76  GIRPPCRAPVLCGNPPTLPGAGAVWESAHLAG 107



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>SEY1_CRYNE (Q5K8P4) Protein SEY1|
          Length = 829

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 462 QPGGDPENDVGAEVFFEPSTQFSAISV-----LYIHLK*NSDEQVGGAERSEEQGVAQSP 298
           +P  D E+D      F+PST F+ ++      L    K ++D     A+RS    VAQ P
Sbjct: 667 EPSFDVESDPSP---FDPSTAFTLLTATKLLSLESRFKRDADAAYVEAKRSMVSSVAQIP 723

Query: 297 AAWTGVQGREGWRRA 253
               GV    GW  A
Sbjct: 724 VWMYGVLVVLGWNEA 738



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>PLDP2_ARATH (Q9M9W8) Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (Phospholipase|
           D2 PHOX and PX containing domain) (Phospholipase D zeta
           2) (PLDzeta2)
          Length = 1046

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 RRQPSLPWTPVHAAGLWATPC 319
           R+ P +PW  VH A LW  PC
Sbjct: 542 RKYPRMPWHDVHCA-LWGPPC 561



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 197  PRSIS----RATGFRPPCAAGVCARRQ 265
            P SIS     + G RPPC+ GVC RR+
Sbjct: 2185 PPSISIDPPESQGSRPPCSPGVCLRRR 2211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,364,886
Number of Sequences: 219361
Number of extensions: 841407
Number of successful extensions: 2576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2573
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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