ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189918.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtcg 293 |||||| ||||||||||||||||||| Sbjct: 487 gccgccggccgccgccgtccgcgtcg 462
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 gcggaatcggcggcccgctcct 113 |||||||||||||||||||||| Sbjct: 3622237 gcggaatcggcggcccgctcct 3622258
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 cccgccgccgccgtccgcgtcg 293 |||||||||||||||||||||| Sbjct: 44735 cccgccgccgccgtccgcgtcg 44714
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 cccgccgccgccgtccgcgtcg 293 |||||||||||||||||||||| Sbjct: 20782336 cccgccgccgccgtccgcgtcg 20782315
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtccgcgtcg 293 |||||| ||||||||||||||||||| Sbjct: 39821505 gccgccggccgccgccgtccgcgtcg 39821530 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 24111077 cctccgacgacaccgccaggatcc 24111100
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtccgcgtcg 293 |||||| ||||||||||||||||||| Sbjct: 2213 gccgccggccgccgccgtccgcgtcg 2238
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtccgcgtcg 293 |||||| ||||||||||||||||||| Sbjct: 172404 gccgccggccgccgccgtccgcgtcg 172429
>dbj|AK110828.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H11, full insert sequence Length = 1662 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtcg 293 |||||| ||||||||||||||||||| Sbjct: 211 gccgccggccgccgccgtccgcgtcg 186
>dbj|AK069472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019C12, full insert sequence Length = 1714 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 cccgccgccgccgtccgcgtcg 293 |||||||||||||||||||||| Sbjct: 196 cccgccgccgccgtccgcgtcg 217
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 cccgccgccgccgtccgcgtcg 293 |||||||||||||||||||||| Sbjct: 20793600 cccgccgccgccgtccgcgtcg 20793579
>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0085M22, complete sequence Length = 145104 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 44217 ccgccgccgccgtccgcgtcg 44237 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtc 292 |||||||||||||||||||| Sbjct: 44183 ccgccgccgccgtccgcgtc 44202
>ref|XM_464434.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 700 ccgccgccgccgtccgcgtcg 720
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 31580 ccgccgccgccgtccgcgtcg 31600
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 gccacctccacgccgggacgc 77 ||||||||||||||||||||| Sbjct: 2434941 gccacctccacgccgggacgc 2434921
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 8420674 ccgccgccgccgtccgcgtcg 8420694 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cgcccgccgccgccgtccgcg 290 ||||||||||||||||||||| Sbjct: 5122895 cgcccgccgccgccgtccgcg 5122875 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtc 292 |||||||||||||||||||| Sbjct: 8420640 ccgccgccgccgtccgcgtc 8420659
>ref|XM_359259.5| PREDICTED: Mus musculus transmembrane protein 1, transcript variant 2 (Tmem1), mRNA Length = 3371 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 29 gccgcccgccgccgccggccgcgtc 5
>ref|XM_899513.2| PREDICTED: Mus musculus transmembrane protein 1, transcript variant 6 (Tmem1), mRNA Length = 955 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 29 gccgcccgccgccgccggccgcgtc 5
>ref|XM_899506.2| PREDICTED: Mus musculus transmembrane protein 1, transcript variant 5 (Tmem1), mRNA Length = 1085 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 29 gccgcccgccgccgccggccgcgtc 5
>ref|XM_125775.8| PREDICTED: Mus musculus transmembrane protein 1, transcript variant 1 (Tmem1), mRNA Length = 5048 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 29 gccgcccgccgccgccggccgcgtc 5
>ref|XM_909464.2| PREDICTED: Mus musculus similar to Transmembrane protein 1 (Epilepsy holoprosencephaly candidate 1 protein) (EHOC-1) (GT334 protein) (LOC634666), mRNA Length = 3567 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 193 gccgcccgccgccgccggccgcgtc 169
>gb|AC164573.5| Mus musculus 10 BAC RP24-221D13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163890 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 161276 gccgcccgccgccgccggccgcgtc 161300
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cgcccgccgccgccgtccgcg 290 ||||||||||||||||||||| Sbjct: 46810 cgcccgccgccgccgtccgcg 46830
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cgcccgccgccgccgtccgcg 290 ||||||||||||||||||||| Sbjct: 133623 cgcccgccgccgccgtccgcg 133643
>dbj|AK166500.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930037B09 product:Similar to transmembrane protein 1 homolog [Homo sapiens], full insert sequence Length = 536 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 29 gccgcccgccgccgccggccgcgtc 5
>gb|AC160405.7| Mus musculus BAC RP23-380K24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184615 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 103878 gccgcccgccgccgccggccgcgtc 103902
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 gaccagccgcccgccgccgcc 283 ||||||||||||||||||||| Sbjct: 23279734 gaccagccgcccgccgccgcc 23279714 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgcccgccgccgccgtccgc 289 |||||||||||||||||||| Sbjct: 8957184 cgcccgccgccgccgtccgc 8957165
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 20609540 ccgccgccgccgtccgcgtcg 20609560
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 8418509 ccgccgccgccgtccgcgtcg 8418529 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cgcccgccgccgccgtccgcg 290 ||||||||||||||||||||| Sbjct: 5122112 cgcccgccgccgccgtccgcg 5122092 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccgccgccgccgtccgcgtc 292 |||||||||||||||||||| Sbjct: 8418475 ccgccgccgccgtccgcgtc 8418494
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 5202312 ccgccgccgccgtccgcgtcg 5202292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ggctccggcgccacctccac 67 |||||||||||||||||||| Sbjct: 20806475 ggctccggcgccacctccac 20806494
>gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-39C4, complete sequence Length = 159108 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtccgcgtc 292 ||||||||||||||||| ||||||| Sbjct: 109722 gccgcccgccgccgccggccgcgtc 109698
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 gaccagccgcccgccgccgcc 283 ||||||||||||||||||||| Sbjct: 34992 gaccagccgcccgccgccgcc 34972
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ccgccgccgccgtccgcgtcg 293 ||||||||||||||||||||| Sbjct: 95765 ccgccgccgccgtccgcgtcg 95745
>ref|XM_483227.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 108 cttccacctccggcgacaccgcca 85
>ref|XM_483226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1256 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 72 cttccacctccggcgacaccgcca 49
>gb|DQ213866.1| Taeniopygia guttata clone 0058P0034H09 Ras-like enriched in brain variant 1-like mRNA, complete sequence Length = 1199 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 cagccgcccgccgccgccgtccgc 289 |||||||||||||||||| ||||| Sbjct: 119 cagccgcccgccgccgccctccgc 142
>ref|NM_192730.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4254 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 178 cctccgacgacaccgccaggatcc 155
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 1252087 ccagccgcccgccgccgccg 1252106
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 2253276 ccagccgcccgccgccgccg 2253257
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cgggcccgatctgtaacgcg 316 |||||||||||||||||||| Sbjct: 111308 cgggcccgatctgtaacgcg 111289
>emb|CT027656.2| Macaca mulatta chromosome 9 BAC CH250-15E16, complete sequence Length = 163478 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 13693 ccagccgcccgccgccgccg 13674
>gb|AC144643.3| Canis familiaris clone RP81-410C20, complete sequence Length = 115479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 20779 gccgcccgccgccgccgtcc 20760
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ccgcccgccgccgccgtccg 288 |||||||||||||||||||| Sbjct: 2138490 ccgcccgccgccgccgtccg 2138509
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 2121433 ccagccgcccgccgccgccg 2121452
>emb|AJ309540.1|GGA309540 Gallus gallus mRNA for chicken interleukin-6 precursor (IL-6 gene) Length = 1142 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 145 gccgcccgccgccgccgtcc 164
>emb|AJ250838.2|GGA250838 Gallus gallus IL-6 gene for interleukin-6 precursor Length = 3245 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 693 gccgcccgccgccgccgtcc 712
>ref|NM_204628.1| Gallus gallus interleukin 6 (interferon, beta 2) (IL6), mRNA Length = 1142 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 145 gccgcccgccgccgccgtcc 164
>gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 343 of 460 of the complete genome Length = 11282 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gccgccgccgtccgcgtcgg 294 |||||||||||||||||||| Sbjct: 8908 gccgccgccgtccgcgtcgg 8889
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gggacgcctccttcccctcc 90 |||||||||||||||||||| Sbjct: 4375108 gggacgcctccttcccctcc 4375089
>gb|DQ239423.1| Mabuya carvalhoi voucher LSUMZ H-12420 myosin heavy chain (MYH) gene, exons 36, 37 and partial cds Length = 920 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cggcttcttccacctccgtc 192 |||||||||||||||||||| Sbjct: 58 cggcttcttccacctccgtc 39
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 cagccgcccgccgccgccgtccgc 289 |||| ||||||||||||||||||| Sbjct: 71334 cagcagcccgccgccgccgtccgc 71311
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gccgccgccgtccgcgtcgg 294 |||||||||||||||||||| Sbjct: 1173405 gccgccgccgtccgcgtcgg 1173424
>tpg|BK001018.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) isolate P0410E03.10 PDR4 ABC transporter (pdr4) gene, complete cds Length = 7801 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 199 cctccgacgacaccgccaggatcc 176
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 19470157 gccgcccgccgccgccgtcc 19470176
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cgggcccgatctgtaacgcg 316 |||||||||||||||||||| Sbjct: 18696928 cgggcccgatctgtaacgcg 18696909
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 24927433 cttccacctccggcgacaccgcca 24927456
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gcccgccgccgccgtccgcg 290 |||||||||||||||||||| Sbjct: 19686195 gcccgccgccgccgtccgcg 19686214
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 tcctcccccggcgccacgcgacgctccc 137 |||||||||||||||||| | ||||||| Sbjct: 2139933 tcctcccccggcgccacgaggcgctccc 2139960
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 86899 cctccgacgacaccgccaggatcc 86922
>gb|AC079610.4| Homo sapiens BAC clone RP11-105N14 from 2, complete sequence Length = 161031 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 11569 ccagccgcccgccgccgccg 11550
>dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1057_E05 Length = 103229 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgcccgccgccgccgtccgc 289 |||||||||||||||||||| Sbjct: 83341 cgcccgccgccgccgtccgc 83322
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B21 Length = 143722 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gcccgccgccgccgtccgcg 290 |||||||||||||||||||| Sbjct: 70651 gcccgccgccgccgtccgcg 70670
>dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1354_H07 Length = 157974 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgcccgccgccgccgtccgc 289 |||||||||||||||||||| Sbjct: 8627 cgcccgccgccgccgtccgc 8608
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ggctccggcgccacctccac 67 |||||||||||||||||||| Sbjct: 48936 ggctccggcgccacctccac 48955
>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_H03 Length = 135914 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 29148 cttccacctccggcgacaccgcca 29171
>dbj|AK119779.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A09, full insert sequence Length = 1688 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 1391 gccgcccgccgccgccgtcc 1372
>dbj|AK121722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081K15, full insert sequence Length = 4828 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 323 cctccgacgacaccgccaggatcc 300
>dbj|AK109943.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F07, full insert sequence Length = 1058 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gcccgccgccgccgtccgcg 290 |||||||||||||||||||| Sbjct: 329 gcccgccgccgccgtccgcg 310
>dbj|AK106422.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B05, full insert sequence Length = 2035 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 188 gccgcccgccgccgccgtcc 207
>ref|NM_210710.1| Eremothecium gossypii AFL194Wp (AFL194W), mRNA Length = 3507 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 cagccgcccgccgccgccgtccgc 289 |||| ||||||||||||||||||| Sbjct: 129 cagcagcccgccgccgccgtccgc 106
>dbj|AK072089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B08, full insert sequence Length = 1320 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 108 cttccacctccggcgacaccgcca 85
>dbj|AK069190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O19, full insert sequence Length = 1254 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cttccacctccgtcgacaccgcca 202 |||||||||||| ||||||||||| Sbjct: 72 cttccacctccggcgacaccgcca 49
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cgccgccgccgtccgcgtcg 293 |||||||||||||||||||| Sbjct: 660236 cgccgccgccgtccgcgtcg 660255
>emb|X68353.1|GGHOXLAB3 G.gallus Ghox-lab homoeobox gene 3' Length = 1504 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 tcggctccggcgccacctccacgc 69 |||||||||||||| ||||||||| Sbjct: 533 tcggctccggcgccgcctccacgc 556
>emb|AJ535047.1|OSA535047 Oryza sativa (japonica cultivar-group) pdr8 gene for PDR-like ABC transporter, exons 1-21 Length = 7801 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 cctccgtcgacaccgccaggatcc 208 |||||| ||||||||||||||||| Sbjct: 199 cctccgacgacaccgccaggatcc 176
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ccagccgcccgccgccgccg 284 |||||||||||||||||||| Sbjct: 862630 ccagccgcccgccgccgccg 862649
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cgggcccgatctgtaacgcg 316 |||||||||||||||||||| Sbjct: 18856329 cgggcccgatctgtaacgcg 18856310
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 19396384 gccgcccgccgccgccgtcc 19396403
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 147851 gccgcccgccgccgccgtcc 147870
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccgcccgccgccgccgtcc 287 |||||||||||||||||||| Sbjct: 2352 gccgcccgccgccgccgtcc 2371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,442,030 Number of Sequences: 3902068 Number of extensions: 2442030 Number of successful extensions: 73946 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70590 Number of HSP's gapped (non-prelim): 3356 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
