ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYNA_THENE (Q60042) Endo-1,4-beta-xylanase A precursor (EC 3.2.1... 32 0.71
2XYNA_THEMA (Q60037) Endo-1,4-beta-xylanase A precursor (EC 3.2.1... 29 7.8

>XYNA_THENE (Q60042) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A) (Endoxylanase)
          Length = 1055

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +2

Query: 248 ASEKVITENILPNGDFSEDLRLWHPNGCHVFVAVEGSGYHNGIKPHSGSKYAVVTHRTQS 427
           A  KV+ E       F + +  W P G  V +++           HSG K   V++R + 
Sbjct: 196 AGPKVVYET-----SFEKGIGDWQPRGSDVKISISPK------VAHSGKKSLFVSNRQKG 244

Query: 428 WQGLEQVLENI-RVGTKYIVTAYV 496
           W G +  L+ I + G  Y   A+V
Sbjct: 245 WHGAQISLKGILKTGKTYAFEAWV 268



to top

>XYNA_THEMA (Q60037) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A)
          Length = 1059

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 257 KVITENILPNGDFSEDLRLWHPNGCHVFVAVEGSGYHNGIKPHSGSKYAVVTHRTQSWQG 436
           KVI E    NG     +  W P G    V +E S        HSG     +++R + WQG
Sbjct: 204 KVIYETSFENG-----VGDWQPRGD---VNIEASSE----VAHSGKSSLFISNRQKGWQG 251

Query: 437 LEQVLENI-RVGTKYIVTAYV 496
            +  L+ I + G  Y   A+V
Sbjct: 252 AQINLKGILKTGKTYAFEAWV 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,263,965
Number of Sequences: 219361
Number of extensions: 1099032
Number of successful extensions: 2276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top