ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03d05 |
|---|---|
| Clone Library Name | barley_pub |
>WDR47_MOUSE (Q8CGF6) WD-repeat protein 47| Length = 920 Score = 43.9 bits (102), Expect = 2e-04 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Frame = +3 Query: 189 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNIKYFEEKVHAGEWDEVERY---LS 344 E++ LIL FL+ +K ++ LE+ESG F ++ + + + G+WDEV ++ L Sbjct: 13 EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72 Query: 345 GFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 455 K D R+ + I KQK+LEAL ++ A D Sbjct: 73 CMEKFDKKRFR----YIILKQKFLEALCVNNAMSAED 105
>WDR47_HUMAN (O94967) WD-repeat protein 47| Length = 919 Score = 43.9 bits (102), Expect = 2e-04 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Frame = +3 Query: 189 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNIKYFEEKVHAGEWDEVERY---LS 344 E++ LIL FL+ +K ++ LE+ESG F ++ + + + G+WDEV ++ L Sbjct: 13 EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72 Query: 345 GFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 455 K D R+ + I KQK+LEAL ++ A D Sbjct: 73 CMEKFDKKRFR----YIILKQKFLEALCVNNAMSAED 105
>Y402_METJA (Q57845) Hypothetical protein MJ0402| Length = 106 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = +3 Query: 288 YFEEK----VHAGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKQK 410 Y +EK VHA WD Y+ G+ +VD+ RY + E+ ++K Sbjct: 44 YVDEKTGALVHA--WDLYRGYVPGYAEVDERRYLEETIKELEEEK 86
>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1| with RanBPM) (Twa1) Length = 228 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%) Frame = +3 Query: 201 LILQFLDEEKFKETVHKLEQESGFYFNIKY--------FEEKVHAGEWDEVERYLSGF-- 350 LI+ +L E FKE K ESG ++ E + G+ E ++ Sbjct: 32 LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91 Query: 351 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 455 +D NRY ++F +++Q +E + + + A++ Sbjct: 92 ELLDTNRY---LYFHLQQQHLIELIRQRETEAALE 123
>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with| RanBPM) (Twa1) Length = 228 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%) Frame = +3 Query: 201 LILQFLDEEKFKETVHKLEQESGFYFNIKY--------FEEKVHAGEWDEVERYLSGF-- 350 LI+ +L E FKE K ESG ++ E + G+ E ++ Sbjct: 32 LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91 Query: 351 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 455 +D NRY ++F +++Q +E + + + A++ Sbjct: 92 ELLDTNRY---LYFHLQQQHLIELIRQRETEAALE 123
>SM1L2_MOUSE (Q920F6) Structural maintenance of chromosomes 1-like 2 protein| (SMC1beta protein) Length = 1248 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Frame = +3 Query: 210 QFLDE-EKFKETVHKLEQESGFYFNIK--YFEEKVHAG-EWDEVERYLSGFTKVDDNRYS 377 +F+ E E K+ + K E+++ F+FN+K E+ HA E +E E Y + ++ N+ Sbjct: 163 EFIGEYEAKKKKLQKAEEDAQFHFNVKKNVAAERKHAKIEKEEAEHYQNLLEELKINKIQ 222 Query: 378 MKIF 389 + +F Sbjct: 223 LMLF 226
>RF2_YERPE (Q8ZHK4) Peptide chain release factor 2 (RF-2)| Length = 366 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = +3 Query: 192 LVFLILQFLDEEKFKETVHKLEQESGFYFNIKYFEEKVHAGEWDEVERYL-----SGFTK 356 L+ L ++ DEE F ET+ +LE G +++ ++ +GE+D YL SG T+ Sbjct: 84 LLELAVEADDEETFNETIAELEVLDGKLGQLEF--RRMFSGEYDRANCYLDLQAGSGGTE 141 Query: 357 VDD 365 D Sbjct: 142 AQD 144
>MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)| Length = 4835 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +3 Query: 285 KYFEEKVHAGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRA 443 K FE+++ EW+E Y S T + +R KI ++Y E L RA Sbjct: 3532 KRFEDQIRIFEWNERSSYTSWLTAQNSHRLCTKII-----REYTEVLQHATRA 3579
>YM39_YEAST (Q03829) Putative mitochondrial carrier YMR166C| Length = 368 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 186 RELVFLILQFLDEEKFKETVHKLEQESG 269 R+L F LQF EKF++ K+EQ+ G Sbjct: 222 RDLPFSALQFAFYEKFRQLAFKIEQKDG 249
>VE06_VACCV (P21607) Protein E6| Length = 567 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 225 EKFKETVHKLEQESGFYFNIKYFEE 299 + +KETVHKL Q+ F KY +E Sbjct: 104 QSYKETVHKLTQDEKFLEVAKYMDE 128
>EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)| (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein end Length = 952 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 306 HAGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 422 + G WDEV Y SG K+ D + + FF++ ++ YL + Sbjct: 190 NTGIWDEVSLYTSGPVKIAD-VHLVSSFFDMFRRAYLHS 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,092,588 Number of Sequences: 219361 Number of extensions: 694227 Number of successful extensions: 2625 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2620 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
