ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 140 1e-33
2CEA_CITFR (P04480) Colicin-A 29 3.9
3KPCG_BOVIN (P05128) Protein kinase C gamma type (EC 2.7.11.13) (... 28 8.8
4KPCG_RAT (P63319) Protein kinase C gamma type (EC 2.7.11.13) (PK... 28 8.8
5KPCG_RABIT (P10829) Protein kinase C gamma type (EC 2.7.11.13) (... 28 8.8
6KPCG_MOUSE (P63318) Protein kinase C gamma type (EC 2.7.11.13) (... 28 8.8

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score =  140 bits (353), Expect = 1e-33
 Identities = 72/90 (80%), Positives = 76/90 (84%)
 Frame = +2

Query: 155 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 334
           MTTDQPVISL             LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60

Query: 335 RERIRYSRDQLLDLRKITDISEQILRLQQE 424
           RER+RYSRDQLLDLRKITD++EQILRLQQE
Sbjct: 61  RERVRYSRDQLLDLRKITDVTEQILRLQQE 90



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>CEA_CITFR (P04480) Colicin-A|
          Length = 592

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 174 TGWSVVMAEGPEPDQGTAAARSTGNRRGAGEEIAEES 64
           TGWS     GPEP  G +   S G+ RG    +  ES
Sbjct: 13  TGWSSERGSGPEPG-GGSHGNSGGHDRGDSSNVGNES 48



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>KPCG_BOVIN (P05128) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
           (Fragment)
          Length = 682

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 146 VPNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFLLLLGEG 30
           +P+P+ +P    R   G +PGR       F FL++LG+G
Sbjct: 309 IPSPSPSPTDSKRCFFGASPGR--LHISDFSFLMVLGKG 345



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>KPCG_RAT (P63319) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
          Length = 697

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 146 VPNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFLLLLGEG 30
           +P+P+ +P    R   G +PGR       F FL++LG+G
Sbjct: 324 IPSPSPSPTDSKRCFFGASPGR--LHISDFSFLMVLGKG 360



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>KPCG_RABIT (P10829) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
           (PKC-delta)
          Length = 697

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 146 VPNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFLLLLGEG 30
           +P+P+ +P    R   G +PGR       F FL++LG+G
Sbjct: 324 IPSPSPSPTDSKRCFFGASPGR--LHISDFSFLMVLGKG 360



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>KPCG_MOUSE (P63318) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
          Length = 697

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 146 VPNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFLLLLGEG 30
           +P+P+ +P    R   G +PGR       F FL++LG+G
Sbjct: 324 IPSPSPSPTDSKRCFFGASPGR--LHISDFSFLMVLGKG 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,027,361
Number of Sequences: 219361
Number of extensions: 732353
Number of successful extensions: 2719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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