>gb|DQ201150.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  706 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Plus

                                                                       
Query: 126 gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 186 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 246 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 306 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 366 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                   
Query: 426 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 356

>gb|DQ201149.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  706 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Plus

                                                                       
Query: 126 gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 186 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 246 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 306 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 366 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                   
Query: 426 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 356

>gb|DQ201151.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
           1a (Cry1a) gene, complete cds
          Length = 3808

 Score =  698 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Plus

                                                                       
Query: 126 gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 186 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 246 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 306 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 366 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                   
Query: 426 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 481
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgtcgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgat 356

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/74 (86%), Gaps = 5/74 (6%)
 Strand = Plus / Plus

                                                                            
Query: 7        gaaaagctgggaacaaatccaagccaaccaaccaatcccaatatccatagaccacactct 66
                |||||| || |||||||||||    |||||||||||||||||||||| | ||||| ||||
Sbjct: 21995870 gaaaagttgagaacaaatcca----aaccaaccaatcccaatatccacataccac-ctct 21995924

                              
Query: 67       ccgttggaccacag 80
                || |||||||||||
Sbjct: 21995925 ccattggaccacag 21995938

>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/74 (86%), Gaps = 5/74 (6%)
 Strand = Plus / Plus

                                                                         
Query: 7     gaaaagctgggaacaaatccaagccaaccaaccaatcccaatatccatagaccacactct 66
             |||||| || |||||||||||    |||||||||||||||||||||| | ||||| ||||
Sbjct: 44492 gaaaagttgagaacaaatcca----aaccaaccaatcccaatatccacataccac-ctct 44546

                           
Query: 67    ccgttggaccacag 80
             || |||||||||||
Sbjct: 44547 ccattggaccacag 44560

>gb|AC140419.8| Mus musculus BAC clone RP24-435P9 from chromosome 3, complete sequence
          Length = 157093

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     aatccaagccaaccaaccaatc 43
              ||||||||||||||||||||||
Sbjct: 144643 aatccaagccaaccaaccaatc 144622

>gb|BC081030.1| Xenopus laevis MGC81689 protein, mRNA (cDNA clone MGC:81689
            IMAGE:6864769), complete cds
          Length = 3197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  aaggggaaatattggtcagat 207
            |||||||||||||||||||||
Sbjct: 2058 aaggggaaatattggtcagat 2078

>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete
              sequence
          Length = 188616

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    aaagtttgcttcatgacagct 355
              |||||||||||||||||||||
Sbjct: 156732 aaagtttgcttcatgacagct 156712

>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence
          Length = 211181

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    aaagtttgcttcatgacagct 355
              |||||||||||||||||||||
Sbjct: 112823 aaagtttgcttcatgacagct 112803

>gb|AC153495.10| Mus musculus 10 BAC RP23-468D5 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 179258

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   aaatccaagccaaccaaccaa 41
            |||||||||||||||||||||
Sbjct: 7512 aaatccaagccaaccaaccaa 7532

>gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, complete sequence
          Length = 200380

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      aagagaaaagctgggaacaaa 23
              |||||||||||||||||||||
Sbjct: 189778 aagagaaaagctgggaacaaa 189798

>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence
          Length = 138158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   aatactccagaaatctttttt 175
             |||||||||||||||||||||
Sbjct: 45310 aatactccagaaatctttttt 45330

>gb|AC153498.17| Mus musculus 10 BAC RP23-353P23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192394

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   aaatccaagccaaccaaccaa 41
            |||||||||||||||||||||
Sbjct: 1565 aaatccaagccaaccaaccaa 1545

>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    aacaaatccaagccaaccaaccaa 41
             |||||| |||||||||||||||||
Sbjct: 68562 aacaaaaccaagccaaccaaccaa 68539

>gb|AC116520.14| Mus musculus chromosome 15, clone RP24-340J12, complete sequence
          Length = 149118

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aatccaagccaaccaaccaa 41
             ||||||||||||||||||||
Sbjct: 49975 aatccaagccaaccaaccaa 49956

>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   aacaaatccaagccaaccaaccaa 41
            |||||| |||||||||||||||||
Sbjct: 6202 aacaaaaccaagccaaccaaccaa 6179

>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete
             sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 351   cagctccctgagctgctgctgctc 374
             |||||||||| |||||||||||||
Sbjct: 99662 cagctccctgtgctgctgctgctc 99685

>gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, complete sequence
          Length = 218980

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aatccaagccaaccaaccaa 41
              ||||||||||||||||||||
Sbjct: 136848 aatccaagccaaccaaccaa 136829

>gb|AC093461.4| Homo sapiens BAC clone RP11-764P14 from 7, complete sequence
          Length = 37408

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   ctccacatcatttcccatgc 230
             ||||||||||||||||||||
Sbjct: 30246 ctccacatcatttcccatgc 30265

>emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on chromosome 10 Contains the
             OAT gene for ornithine aminotransferase (gyrate atrophy),
             a homeobox protein pseudogene, the 5' end of the LHPP gene
             for phospholysine phosphohistidine inorganic pyrophosphate
             phosphatase, a RPS10 (40S ribosomal protein 10) pseudogene
             and four CpG islands, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   caccaccatcccacctcccagcaa 152
             ||||||||||||| ||||||||||
Sbjct: 37990 caccaccatcccagctcccagcaa 38013

>emb|AL390318.20| Human DNA sequence from clone RP11-142L16 on chromosome 10 Contains the
              5' end of the PIP5K2A gene for
              phosphatidylinositol-4-phosphate 5-kinase type II alpha and
              one CpG island, complete sequence
          Length = 164955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    cttcatgacagctccctgag 362
              ||||||||||||||||||||
Sbjct: 156797 cttcatgacagctccctgag 156816

>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
             unprocessed pseudogene similar to regulator of G-protein
             signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   atactccagaaatctttttt 175
             ||||||||||||||||||||
Sbjct: 45257 atactccagaaatctttttt 45276

>emb|AL133344.28| Human DNA sequence from clone RP5-1158H2 on chromosome Xp11.23-11.4
             Contains part of gene FLJ22843, a KIAA0218 pseudogene, and
             a ribonucleotide reductase M2 polypeptide (RRM2)
             pseudogene, complete sequence
          Length = 168544

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   gctgctgctcgttatccaagagag 388
             ||||||| ||||||||||||||||
Sbjct: 62754 gctgctgatcgttatccaagagag 62731

>emb|AL096799.6|HSJ764O22 Human DNA sequence from clone RP4-764O22 on chromosome 20 Contains the
             parts of two novel genes, complete sequence
          Length = 82812

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aaaatactccagaaatcttt 172
             ||||||||||||||||||||
Sbjct: 54902 aaaatactccagaaatcttt 54883

>gb|AC159463.1| Pan troglodytes BAC clone CH251-413O15 from chromosome unknown, complete
              sequence
          Length = 151114

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 365    gctgctgctcgttatccaagagag 388
              ||||||| ||||||||||||||||
Sbjct: 128393 gctgctgatcgttatccaagagag 128370

>gb|AC063943.23| Homo sapiens 12 BAC RP11-18C24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   ccacctcccagcaaaaaata 158
             ||||||||||||||||||||
Sbjct: 70886 ccacctcccagcaaaaaata 70867

>dbj|AB103097.1| Synthetic construct DNA, promoter sequence, clone:PCF10
          Length = 1027

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 gcaagaacaccaccatccca 141
           ||||||||||||||||||||
Sbjct: 260 gcaagaacaccaccatccca 241

>emb|BX005171.9| Mouse DNA sequence from clone RP23-234H6 on chromosome X, complete
            sequence
          Length = 172077

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 351  cagctccctgagctgctgctgctc 374
            |||||||||||| |||||||||||
Sbjct: 2046 cagctccctgagatgctgctgctc 2069

>gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, complete sequence
          Length = 208984

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 18     aacaaatccaagccaaccaaccaa 41
              |||||| |||||||||||||||||
Sbjct: 181282 aacaaaaccaagccaaccaaccaa 181259

>ref|NM_208437.1| Eremothecium gossypii ABR137Wp (ABR137W), mRNA
          Length = 2868

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  cccagttcattccacggttc 275
            ||||||||||||||||||||
Sbjct: 1973 cccagttcattccacggttc 1954

>emb|Z33612.1|ZMPHMU2 Z.mays (W22) phosphoglycerate mutase gene exons 2-8
          Length = 3583

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 acaaagtttgcttcatgaca 352
           ||||||||||||||||||||
Sbjct: 540 acaaagtttgcttcatgaca 559

>gb|AC161010.3| Pan troglodytes BAC clone CH251-501B6 from chromosome unknown, complete
             sequence
          Length = 157204

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   gctgctgctcgttatccaagagag 388
             ||||||| ||||||||||||||||
Sbjct: 57514 gctgctgatcgttatccaagagag 57491

>emb|AL807819.13| Mouse DNA sequence from clone RP23-36F14 on chromosome 4, complete
             sequence
          Length = 102307

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    aacaaatccaagccaaccaaccaa 41
             ||||||||||| ||||||||||||
Sbjct: 63067 aacaaatccaaaccaaccaaccaa 63044

>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    cccagttcattccacggttc 275
              ||||||||||||||||||||
Sbjct: 655091 cccagttcattccacggttc 655072

>emb|AL606985.26| Mouse DNA sequence from clone RP23-153M14 on chromosome 4, complete
             sequence
          Length = 193947

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    caaatccaagccaaccaaccaatc 43
             |||| |||||||||||||||||||
Sbjct: 48591 caaaaccaagccaaccaaccaatc 48568

>emb|AL645793.14| Mouse DNA sequence from clone RP23-480H2 on chromosome 1, complete
            sequence
          Length = 93900

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  aaaaagaaggggaaatattg 200
            ||||||||||||||||||||
Sbjct: 2541 aaaaagaaggggaaatattg 2522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,262,964
Number of Sequences: 3902068
Number of extensions: 5262964
Number of successful extensions: 102528
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102408
Number of HSP's gapped (non-prelim): 118
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)