Clone Name | bastl03c09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2730 Score = 172 bits (87), Expect = 7e-40 Identities = 240/291 (82%) Strand = Plus / Plus Query: 127 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 186 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 46 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 105 Query: 187 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 246 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| Sbjct: 106 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctat 165 Query: 247 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 306 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 166 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 225 Query: 307 aggagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggct 366 |||||||||||| |||| |||||||||||||||||| | | |||||| | |||| Sbjct: 226 aggagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggct 285 Query: 367 tctcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 417 |||||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 286 tctcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 336
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 129 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 188 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 23827832 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 23827891 Query: 189 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 248 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 23827892 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 23827951 Query: 249 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 308 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 23827952 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 23828011 Query: 309 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 368 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 23828012 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 23828071 Query: 369 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 417 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 23828072 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 23828120 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 20452592 accgccgtggcgtcgcagccg 20452572
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 129 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 188 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 117032 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 117091 Query: 189 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 248 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 117092 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 117151 Query: 249 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 308 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 117152 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 117211 Query: 309 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 368 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 117212 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 117271 Query: 369 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 417 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 117272 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 117320
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 129 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 188 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 19536 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 19595 Query: 189 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 248 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 19596 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 19655 Query: 249 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 308 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 19656 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 19715 Query: 309 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 368 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 19716 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 19775 Query: 369 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 417 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 19776 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 19824
>dbj|AK065903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049J03, full insert sequence Length = 2736 Score = 165 bits (83), Expect = 2e-37 Identities = 239/291 (82%) Strand = Plus / Plus Query: 127 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 186 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 187 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 246 Query: 187 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 246 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| || | Sbjct: 247 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagccat 306 Query: 247 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 306 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 307 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 366 Query: 307 aggagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggct 366 |||||||||||| |||| |||||||||||||||||| | | |||||| | |||| Sbjct: 367 aggagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggct 426 Query: 367 tctcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 417 |||||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 427 tctcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 477
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 cccgcgccgatctcgtcgtcggc 34 ||||||||||||||||||||||| Sbjct: 58809 cccgcgccgatctcgtcgtcggc 58787
>ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group), P0456B03.120 mRNA Length = 1152 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA Length = 1479 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 cgaccgccgtggcgtcgcagccgcg 83 |||||||| |||||||||||||||| Sbjct: 1266 cgaccgccatggcgtcgcagccgcg 1290
>gb|AC131118.4| Mus musculus BAC clone RP24-386M5 from chromosome 19, complete sequence Length = 116409 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 tcaagatgatggcagtggtgt 389 ||||||||||||||||||||| Sbjct: 55957 tcaagatgatggcagtggtgt 55977
>emb|CR734455.2|CNS0GTHI Tetraodon nigroviridis full-length cDNA Length = 719 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcaaccccgatggcgaccg 64 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>emb|CR720927.2|CNS0GJ7P Tetraodon nigroviridis full-length cDNA Length = 620 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcaaccccgatggcgaccg 64 ||||||||||||||||||||| Sbjct: 255 cagcaaccccgatggcgaccg 235
>emb|CR671250.2|CNS0FGWO Tetraodon nigroviridis full-length cDNA Length = 731 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcaaccccgatggcgaccg 64 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 cgaccgccgtggcgtcgcagccgcg 83 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>gb|AC007488.15| Homo sapiens 3q27 BAC RP11-246B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146443 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 gcagtcaaatgaaggaaataa 442 ||||||||||||||||||||| Sbjct: 129509 gcagtcaaatgaaggaaataa 129529
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 cgaccgccgtggcgtcgcagccgcg 83 |||||||| |||||||||||||||| Sbjct: 85332 cgaccgccatggcgtcgcagccgcg 85356
>emb|BX539345.7| Zebrafish DNA sequence from clone DKEY-120M4 in linkage group 9, complete sequence Length = 94606 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 aggaaataagggtgaaattgg 454 ||||||||||||||||||||| Sbjct: 17969 aggaaataagggtgaaattgg 17989
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 cgaccgccgtggcgtcgcagccgcg 83 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>gb|AC007690.12| Homo sapiens 3 BAC RP11-42D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181531 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 gcagtcaaatgaaggaaataa 442 ||||||||||||||||||||| Sbjct: 153824 gcagtcaaatgaaggaaataa 153804
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 83222 accgccgtggcgtcgcagccg 83202
>dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B12, full insert sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full insert sequence Length = 1152 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 accgccgtggcgtcgcagccg 81 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 208 aaaaaattccattcccaaatttcta 232 ||||||||| ||||||||||||||| Sbjct: 1528447 aaaaaattcaattcccaaatttcta 1528423
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 cgaccgccgtggcgtcgcagccgcg 83 |||||||| |||||||||||||||| Sbjct: 1385999 cgaccgccatggcgtcgcagccgcg 1386023
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tggcgaccgccgtggcgtcg 75 |||||||||||||||||||| Sbjct: 68893 tggcgaccgccgtggcgtcg 68912
>gb|AE009362.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 132 of 187 of the complete sequence Length = 11612 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cgatggcgaccgccgtggcg 72 |||||||||||||||||||| Sbjct: 2204 cgatggcgaccgccgtggcg 2223
>gb|AE008251.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 55 of 187 of the complete sequence Length = 19961 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgatggcgaccgccgtggcg 72 |||||||||||||||||||| Sbjct: 14334 cgatggcgaccgccgtggcg 14315
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgcgccgatctcgtcgtcg 32 |||||||||||||||||||| Sbjct: 3208288 ccgcgccgatctcgtcgtcg 3208307
>gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome 7, complete sequence Length = 131080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 aggagacagaggatagcctt 326 |||||||||||||||||||| Sbjct: 102269 aggagacagaggatagcctt 102250
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gatctcgtcgtcggcctcga 39 |||||||||||||||||||| Sbjct: 1541173 gatctcgtcgtcggcctcga 1541154
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgtctgttaatggagtacca 408 |||||||||||||||||||| Sbjct: 139005 tgtctgttaatggagtacca 139024
>emb|AL691512.11| Mouse DNA sequence from clone RP23-440L5 on chromosome 4 Contains a CpG island, complete sequence Length = 206422 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 tgatcccagcagtcaaatga 433 |||||||||||||||||||| Sbjct: 97936 tgatcccagcagtcaaatga 97917
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 caaatttctaagagaaagtgctac 246 ||||||||| |||||||||||||| Sbjct: 162945 caaatttcttagagaaagtgctac 162922
>gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) and TebC (tebC) genes, complete cds Length = 6262 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cgtcgtcggcctcgaggagcagca 48 |||||||||| ||||||||||||| Sbjct: 1489 cgtcgtcggcgtcgaggagcagca 1466
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccgcgccgatctcgtcgtcg 32 |||||||||||||||||||| Sbjct: 2805030 ccgcgccgatctcgtcgtcg 2805011
>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence Length = 176196 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aggaaataagggtgaaattggata 457 |||||||||||||||| ||||||| Sbjct: 8643 aggaaataagggtgaatttggata 8666
>emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in linkage group 1, complete sequence Length = 209003 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tgatggcagtggtgtgtctg 394 |||||||||||||||||||| Sbjct: 167192 tgatggcagtggtgtgtctg 167173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,208,565 Number of Sequences: 3902068 Number of extensions: 4208565 Number of successful extensions: 78851 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78443 Number of HSP's gapped (non-prelim): 403 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)