Clone Name | bastl03c01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472287.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2859 Score = 190 bits (96), Expect = 3e-45 Identities = 183/212 (86%) Strand = Plus / Plus Query: 217 atgagccagagttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaag 276 ||||||| ||||||||| ||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 1 atgagcctgagttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaag 60 Query: 277 ccttctgaagtctactatatcttgttgaatcatgagcagctccagatcacccatgagcca 336 |||||||||||||||||||||||| ||||||||| | ||| ||||||| ||| || Sbjct: 61 ccttctgaagtctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccg 120 Query: 337 ccgaataagccacccagtggttcactattcctttataatcgccgtgtgaatcgttttttc 396 || || ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct: 121 ccaaagaagccacccagtggttctctattcctttataatcgccgtgtgaatcggtatttt 180 Query: 397 cggaaagatggttatgcatggcgaaggaagaa 428 |||| ||||| |||||||||| |||||||| Sbjct: 181 cggagggatggccatgcatggcggaggaagaa 212
>dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110J06, full insert sequence Length = 3630 Score = 190 bits (96), Expect = 3e-45 Identities = 183/212 (86%) Strand = Plus / Plus Query: 217 atgagccagagttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaag 276 ||||||| ||||||||| ||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 309 atgagcctgagttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaag 368 Query: 277 ccttctgaagtctactatatcttgttgaatcatgagcagctccagatcacccatgagcca 336 |||||||||||||||||||||||| ||||||||| | ||| ||||||| ||| || Sbjct: 369 ccttctgaagtctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccg 428 Query: 337 ccgaataagccacccagtggttcactattcctttataatcgccgtgtgaatcgttttttc 396 || || ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct: 429 ccaaagaagccacccagtggttctctattcctttataatcgccgtgtgaatcggtatttt 488 Query: 397 cggaaagatggttatgcatggcgaaggaagaa 428 |||| ||||| |||||||||| |||||||| Sbjct: 489 cggagggatggccatgcatggcggaggaagaa 520
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 103 bits (52), Expect = 5e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 227 gttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaagccttctgaag 286 ||||||| ||||||||||||| | |||||||| |||||||||| ||||||||||||||| Sbjct: 19117733 gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 19117792 Query: 287 tctactatatcttgttgaatcatgagcagctccagatcacccatgagccaccgaataagc 346 |||||||||||||| ||||||||| | ||| ||||||| ||| || || || |||| Sbjct: 19117793 tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 19117852 Query: 347 cacccagt 354 |||||||| Sbjct: 19117853 cacccagt 19117860 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 353 gtggttcactattcctttataatcgccgtgtgaatcgttttttccggaaagatggttatg 412 ||||||| ||||||||||||||||||||||||||||| | ||| |||| ||||| ||| Sbjct: 19117946 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 19118005 Query: 413 catggcgaaggaagaa 428 ||||||| |||||||| Sbjct: 19118006 catggcggaggaagaa 19118021
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 103 bits (52), Expect = 5e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 227 gttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaagccttctgaag 286 ||||||| ||||||||||||| | |||||||| |||||||||| ||||||||||||||| Sbjct: 51254 gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 51313 Query: 287 tctactatatcttgttgaatcatgagcagctccagatcacccatgagccaccgaataagc 346 |||||||||||||| ||||||||| | ||| ||||||| ||| || || || |||| Sbjct: 51314 tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 51373 Query: 347 cacccagt 354 |||||||| Sbjct: 51374 cacccagt 51381 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 353 gtggttcactattcctttataatcgccgtgtgaatcgttttttccggaaagatggttatg 412 ||||||| ||||||||||||||||||||||||||||| | ||| |||| ||||| ||| Sbjct: 51467 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 51526 Query: 413 catggcgaaggaagaa 428 ||||||| |||||||| Sbjct: 51527 catggcggaggaagaa 51542
>gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, complete sequence Length = 169385 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 5665 tcagttcttgtttgtttggag 5685
>gb|AC118464.2| Homo sapiens chromosome 5 clone RP11-772D18, complete sequence Length = 38796 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 36154 tcagttcttgtttgtttggag 36174
>gb|AC157496.3| Pan troglodytes BAC clone CH251-564E6 from chromosome unknown, complete sequence Length = 213433 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 210787 tcagttcttgtttgtttggag 210807
>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10, complete sequence Length = 241472 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 tgtcctacctccccattcaag 56 ||||||||||||||||||||| Sbjct: 110852 tgtcctacctccccattcaag 110872
>gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chromosome unknown, complete sequence Length = 232130 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 2081 tcagttcttgtttgtttggag 2101
>dbj|AB016625.1| Homo sapiens OCTN2 gene, complete cds Length = 25871 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 24367 tcagttcttgtttgtttggag 24387
>gb|AC004628.1|AC004628 Homo sapiens chromosome 5, P1 clone 722G11 (LBNL H24), complete sequence Length = 29312 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 tcagttcttgtttgtttggag 127 ||||||||||||||||||||| Sbjct: 7558 tcagttcttgtttgtttggag 7538
>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete sequence Length = 258170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gtttcagttcttgtttgtttg 124 ||||||||||||||||||||| Sbjct: 162455 gtttcagttcttgtttgtttg 162435
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 catgagagcttcgaggctgccggtgccg 199 |||||| |||||| |||||||||||||| Sbjct: 3290154 catgagcgcttcggggctgccggtgccg 3290181
>ref|XM_457876.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C05016g) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 atcttgttgaatcatgagca 314 |||||||||||||||||||| Sbjct: 223 atcttgttgaatcatgagca 204
>gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's Hospital Oakland Research Institute) complete sequence Length = 173190 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gaagtctactatatcttgtt 302 |||||||||||||||||||| Sbjct: 116765 gaagtctactatatcttgtt 116746
>gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, complete sequence Length = 216326 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gtttcagttcttgtttgttt 123 |||||||||||||||||||| Sbjct: 15928 gtttcagttcttgtttgttt 15947
>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence Length = 117645 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 388 cgttttttccggaaagatggttatgcatggcg 419 ||||| ||||||||||||||| |||| ||||| Sbjct: 1614 cgtttcttccggaaagatggtcatgcctggcg 1583
>gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete sequence Length = 130834 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ggaaagatggttatgcatgg 417 |||||||||||||||||||| Sbjct: 70902 ggaaagatggttatgcatgg 70921
>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7, complete sequence Length = 194826 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ttcaagtccaagcacaagcagcat 74 ||||| |||||||||||||||||| Sbjct: 137655 ttcaattccaagcacaagcagcat 137632
>emb|AL034555.2|HS134O19 Human DNA sequence from clone RP1-134O19 on chromosome 1p36.11-36.33 Contains the 3' end of the gene for SMART/HDAC1 associated repressor protein (SHARP), the 3' end of the ZNF151 gene for zinc finger protein 151 (pHZ-67) and a CpG island, complete sequence Length = 86897 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aggctgccggtgccggatct 204 |||||||||||||||||||| Sbjct: 63307 aggctgccggtgccggatct 63288
>emb|X80836.1|SC8175 S.cerevisiae chromosome XIII cosmid 8175 Length = 15581 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tctcggagaagcaaagagca 265 |||||||||||||||||||| Sbjct: 5663 tctcggagaagcaaagagca 5644
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 atcttgttgaatcatgagca 314 |||||||||||||||||||| Sbjct: 410340 atcttgttgaatcatgagca 410321
>ref|NM_001000154.1| Rattus norvegicus olfactory receptor 120 (predicted) (Olr120_predicted), mRNA Length = 945 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gaagtctactatatcttgtt 302 |||||||||||||||||||| Sbjct: 67 gaagtctactatatcttgtt 86
>gb|BC069790.1| Homo sapiens cDNA clone IMAGE:7262508, with apparent retained intron Length = 948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aggctgccggtgccggatct 204 |||||||||||||||||||| Sbjct: 344 aggctgccggtgccggatct 325
>dbj|AB169777.1| Macaca fascicularis brain cDNA, clone: QtrA-12408, similar to human HMP19 protein (HMP19), mRNA, RefSeq: NM_015980.3 Length = 2335 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tttcagttcttgtttgtttg 124 |||||||||||||||||||| Sbjct: 1557 tttcagttcttgtttgtttg 1576
>gb|AC000050.22| Homo sapiens Chromosome 22q13 Cosmid Clone n66c4, complete sequence Length = 42167 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagcagctccagatcaccca 329 |||||||||||||||||||| Sbjct: 9402 gagcagctccagatcaccca 9383
>gb|AC109146.26| Mus musculus chromosome 8, clone RP23-54G23, complete sequence Length = 197868 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ccaagcacaagcagcatcag 77 |||||||||||||||||||| Sbjct: 71425 ccaagcacaagcagcatcag 71406
>emb|BX119966.7| Zebrafish DNA sequence from clone CH211-266N15, complete sequence Length = 182813 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ttcaagtccaagcacaagcagcat 74 ||||| |||||||||||||||||| Sbjct: 29310 ttcaattccaagcacaagcagcat 29333
>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete sequence Length = 218427 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 agtccaagcacaagcagcat 74 |||||||||||||||||||| Sbjct: 201836 agtccaagcacaagcagcat 201855
>gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, complete sequence Length = 231965 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gtttcagttcttgtttgttt 123 |||||||||||||||||||| Sbjct: 206051 gtttcagttcttgtttgttt 206070
>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete sequence Length = 206168 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cagtggttcactattccttt 370 |||||||||||||||||||| Sbjct: 126043 cagtggttcactattccttt 126024 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,975,047 Number of Sequences: 3902068 Number of extensions: 4975047 Number of successful extensions: 75778 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75670 Number of HSP's gapped (non-prelim): 108 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)