ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472287.1| Oryza sativa (japonica cultivar-group), predic... 190 3e-45
2dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 103 5e-19
5gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, comple... 42 1.5
6gb|AC118464.2| Homo sapiens chromosome 5 clone RP11-772D18, comp... 42 1.5
7gb|AC157496.3| Pan troglodytes BAC clone CH251-564E6 from chromo... 42 1.5
8emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in l... 42 1.5
9gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chrom... 42 1.5
10dbj|AB016625.1| Homo sapiens OCTN2 gene, complete cds 42 1.5
11gb|AC004628.1|AC004628 Homo sapiens chromosome 5, P1 clone 722G1... 42 1.5
12emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chro... 42 1.5
13gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.8
14ref|XM_457876.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.8
15gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's H... 40 5.8
16gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, comple... 40 5.8
17gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 40 5.8
18gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete ... 40 5.8
19emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in... 40 5.8
20emb|AL034555.2|HS134O19 Human DNA sequence from clone RP1-134O19... 40 5.8
21emb|X80836.1|SC8175 S.cerevisiae chromosome XIII cosmid 8175 40 5.8
22emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 5.8
23ref|NM_001000154.1| Rattus norvegicus olfactory receptor 120 (pr... 40 5.8
24gb|BC069790.1| Homo sapiens cDNA clone IMAGE:7262508, with appar... 40 5.8
25dbj|AB169777.1| Macaca fascicularis brain cDNA, clone: QtrA-1240... 40 5.8
26gb|AC000050.22| Homo sapiens Chromosome 22q13 Cosmid Clone n66c4... 40 5.8
27gb|AC109146.26| Mus musculus chromosome 8, clone RP23-54G23, com... 40 5.8
28emb|BX119966.7| Zebrafish DNA sequence from clone CH211-266N15, ... 40 5.8
29emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on ch... 40 5.8
30gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, compl... 40 5.8
31emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro... 40 5.8

>ref|XM_472287.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2859

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 atgagccagagttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaag 276
           ||||||| ||||||||| ||||||||||||| |  |||||||| |||||||||| |||||
Sbjct: 1   atgagcctgagttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaag 60

                                                                       
Query: 277 ccttctgaagtctactatatcttgttgaatcatgagcagctccagatcacccatgagcca 336
           ||||||||||||||||||||||||   |||||||||  | |||  ||||||| ||| || 
Sbjct: 61  ccttctgaagtctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccg 120

                                                                       
Query: 337 ccgaataagccacccagtggttcactattcctttataatcgccgtgtgaatcgttttttc 396
           || || ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| 
Sbjct: 121 ccaaagaagccacccagtggttctctattcctttataatcgccgtgtgaatcggtatttt 180

                                           
Query: 397 cggaaagatggttatgcatggcgaaggaagaa 428
           ||||  |||||  |||||||||| ||||||||
Sbjct: 181 cggagggatggccatgcatggcggaggaagaa 212



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>dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110J06, full
           insert sequence
          Length = 3630

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 atgagccagagttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaag 276
           ||||||| ||||||||| ||||||||||||| |  |||||||| |||||||||| |||||
Sbjct: 309 atgagcctgagttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaag 368

                                                                       
Query: 277 ccttctgaagtctactatatcttgttgaatcatgagcagctccagatcacccatgagcca 336
           ||||||||||||||||||||||||   |||||||||  | |||  ||||||| ||| || 
Sbjct: 369 ccttctgaagtctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccg 428

                                                                       
Query: 337 ccgaataagccacccagtggttcactattcctttataatcgccgtgtgaatcgttttttc 396
           || || ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| 
Sbjct: 429 ccaaagaagccacccagtggttctctattcctttataatcgccgtgtgaatcggtatttt 488

                                           
Query: 397 cggaaagatggttatgcatggcgaaggaagaa 428
           ||||  |||||  |||||||||| ||||||||
Sbjct: 489 cggagggatggccatgcatggcggaggaagaa 520



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  103 bits (52), Expect = 5e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                            
Query: 227      gttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaagccttctgaag 286
                ||||||| ||||||||||||| |  |||||||| |||||||||| |||||||||||||||
Sbjct: 19117733 gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 19117792

                                                                            
Query: 287      tctactatatcttgttgaatcatgagcagctccagatcacccatgagccaccgaataagc 346
                ||||||||||||||   |||||||||  | |||  ||||||| ||| || || || ||||
Sbjct: 19117793 tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 19117852

                        
Query: 347      cacccagt 354
                ||||||||
Sbjct: 19117853 cacccagt 19117860



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                            
Query: 353      gtggttcactattcctttataatcgccgtgtgaatcgttttttccggaaagatggttatg 412
                ||||||| ||||||||||||||||||||||||||||| | ||| ||||  |||||  |||
Sbjct: 19117946 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 19118005

                                
Query: 413      catggcgaaggaagaa 428
                ||||||| ||||||||
Sbjct: 19118006 catggcggaggaagaa 19118021



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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  103 bits (52), Expect = 5e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                         
Query: 227   gttttgacatcaacgtgcttctcggagaagcaaagagcaggtggttaaagccttctgaag 286
             ||||||| ||||||||||||| |  |||||||| |||||||||| |||||||||||||||
Sbjct: 51254 gttttgatatcaacgtgcttcacaaagaagcaaggagcaggtggctaaagccttctgaag 51313

                                                                         
Query: 287   tctactatatcttgttgaatcatgagcagctccagatcacccatgagccaccgaataagc 346
             ||||||||||||||   |||||||||  | |||  ||||||| ||| || || || ||||
Sbjct: 51314 tctactatatcttgcaaaatcatgagaggttcccaatcacccctgaaccgccaaagaagc 51373

                     
Query: 347   cacccagt 354
             ||||||||
Sbjct: 51374 cacccagt 51381



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                         
Query: 353   gtggttcactattcctttataatcgccgtgtgaatcgttttttccggaaagatggttatg 412
             ||||||| ||||||||||||||||||||||||||||| | ||| ||||  |||||  |||
Sbjct: 51467 gtggttctctattcctttataatcgccgtgtgaatcggtattttcggagggatggccatg 51526

                             
Query: 413   catggcgaaggaagaa 428
             ||||||| ||||||||
Sbjct: 51527 catggcggaggaagaa 51542



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>gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, complete sequence
          Length = 169385

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 107  tcagttcttgtttgtttggag 127
            |||||||||||||||||||||
Sbjct: 5665 tcagttcttgtttgtttggag 5685



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>gb|AC118464.2| Homo sapiens chromosome 5 clone RP11-772D18, complete sequence
          Length = 38796

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   tcagttcttgtttgtttggag 127
             |||||||||||||||||||||
Sbjct: 36154 tcagttcttgtttgtttggag 36174



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>gb|AC157496.3| Pan troglodytes BAC clone CH251-564E6 from chromosome unknown, complete
              sequence
          Length = 213433

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    tcagttcttgtttgtttggag 127
              |||||||||||||||||||||
Sbjct: 210787 tcagttcttgtttgtttggag 210807



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>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10, complete
              sequence
          Length = 241472

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 36     tgtcctacctccccattcaag 56
              |||||||||||||||||||||
Sbjct: 110852 tgtcctacctccccattcaag 110872



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>gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chromosome unknown,
            complete sequence
          Length = 232130

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 107  tcagttcttgtttgtttggag 127
            |||||||||||||||||||||
Sbjct: 2081 tcagttcttgtttgtttggag 2101



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>dbj|AB016625.1| Homo sapiens OCTN2 gene, complete cds
          Length = 25871

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   tcagttcttgtttgtttggag 127
             |||||||||||||||||||||
Sbjct: 24367 tcagttcttgtttgtttggag 24387



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>gb|AC004628.1|AC004628 Homo sapiens chromosome 5, P1 clone 722G11 (LBNL H24), complete
            sequence
          Length = 29312

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  tcagttcttgtttgtttggag 127
            |||||||||||||||||||||
Sbjct: 7558 tcagttcttgtttgtttggag 7538



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>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete
              sequence
          Length = 258170

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    gtttcagttcttgtttgtttg 124
              |||||||||||||||||||||
Sbjct: 162455 gtttcagttcttgtttgtttg 162435



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 172     catgagagcttcgaggctgccggtgccg 199
               |||||| |||||| ||||||||||||||
Sbjct: 3290154 catgagcgcttcggggctgccggtgccg 3290181



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>ref|XM_457876.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C05016g)
           partial mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 atcttgttgaatcatgagca 314
           ||||||||||||||||||||
Sbjct: 223 atcttgttgaatcatgagca 204



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>gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 173190

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gaagtctactatatcttgtt 302
              ||||||||||||||||||||
Sbjct: 116765 gaagtctactatatcttgtt 116746



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>gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, complete sequence
          Length = 216326

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   gtttcagttcttgtttgttt 123
             ||||||||||||||||||||
Sbjct: 15928 gtttcagttcttgtttgttt 15947



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>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 388  cgttttttccggaaagatggttatgcatggcg 419
            ||||| ||||||||||||||| |||| |||||
Sbjct: 1614 cgtttcttccggaaagatggtcatgcctggcg 1583



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>gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete sequence
          Length = 130834

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   ggaaagatggttatgcatgg 417
             ||||||||||||||||||||
Sbjct: 70902 ggaaagatggttatgcatgg 70921



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>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7, complete
              sequence
          Length = 194826

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     ttcaagtccaagcacaagcagcat 74
              ||||| ||||||||||||||||||
Sbjct: 137655 ttcaattccaagcacaagcagcat 137632



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>emb|AL034555.2|HS134O19 Human DNA sequence from clone RP1-134O19 on chromosome 1p36.11-36.33
             Contains the 3' end of the gene for SMART/HDAC1 associated
             repressor protein (SHARP), the 3' end of the ZNF151 gene
             for zinc finger protein 151 (pHZ-67) and a CpG island,
             complete sequence
          Length = 86897

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   aggctgccggtgccggatct 204
             ||||||||||||||||||||
Sbjct: 63307 aggctgccggtgccggatct 63288



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>emb|X80836.1|SC8175 S.cerevisiae chromosome XIII cosmid 8175
          Length = 15581

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tctcggagaagcaaagagca 265
            ||||||||||||||||||||
Sbjct: 5663 tctcggagaagcaaagagca 5644



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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    atcttgttgaatcatgagca 314
              ||||||||||||||||||||
Sbjct: 410340 atcttgttgaatcatgagca 410321



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>ref|NM_001000154.1| Rattus norvegicus olfactory receptor 120 (predicted)
           (Olr120_predicted), mRNA
          Length = 945

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 gaagtctactatatcttgtt 302
           ||||||||||||||||||||
Sbjct: 67  gaagtctactatatcttgtt 86



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>gb|BC069790.1| Homo sapiens cDNA clone IMAGE:7262508, with apparent retained
           intron
          Length = 948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 aggctgccggtgccggatct 204
           ||||||||||||||||||||
Sbjct: 344 aggctgccggtgccggatct 325



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>dbj|AB169777.1| Macaca fascicularis brain cDNA, clone: QtrA-12408, similar to human
            HMP19 protein (HMP19), mRNA, RefSeq: NM_015980.3
          Length = 2335

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  tttcagttcttgtttgtttg 124
            ||||||||||||||||||||
Sbjct: 1557 tttcagttcttgtttgtttg 1576



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>gb|AC000050.22| Homo sapiens Chromosome 22q13 Cosmid Clone n66c4, complete sequence
          Length = 42167

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gagcagctccagatcaccca 329
            ||||||||||||||||||||
Sbjct: 9402 gagcagctccagatcaccca 9383



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>gb|AC109146.26| Mus musculus chromosome 8, clone RP23-54G23, complete sequence
          Length = 197868

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    ccaagcacaagcagcatcag 77
             ||||||||||||||||||||
Sbjct: 71425 ccaagcacaagcagcatcag 71406



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>emb|BX119966.7| Zebrafish DNA sequence from clone CH211-266N15, complete sequence
          Length = 182813

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    ttcaagtccaagcacaagcagcat 74
             ||||| ||||||||||||||||||
Sbjct: 29310 ttcaattccaagcacaagcagcat 29333



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>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete
              sequence
          Length = 218427

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     agtccaagcacaagcagcat 74
              ||||||||||||||||||||
Sbjct: 201836 agtccaagcacaagcagcat 201855



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>gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, complete sequence
          Length = 231965

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    gtttcagttcttgtttgttt 123
              ||||||||||||||||||||
Sbjct: 206051 gtttcagttcttgtttgttt 206070



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>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete
              sequence
          Length = 206168

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    cagtggttcactattccttt 370
              ||||||||||||||||||||
Sbjct: 126043 cagtggttcactattccttt 126024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,975,047
Number of Sequences: 3902068
Number of extensions: 4975047
Number of successful extensions: 75778
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75670
Number of HSP's gapped (non-prelim): 108
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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