ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03b12 |
|---|---|
| Clone Library Name | barley_pub |
>Y1738_CHRVO (Q7NX89) UPF0313 protein CV_1738| Length = 758 Score = 33.9 bits (76), Expect = 0.20 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 14/136 (10%) Frame = -1 Query: 410 GIALLHSRDIAGSGFRPLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLP 231 G L RDI G+ F +PH P E + SV D P R H Q +P+Q Sbjct: 207 GEKLSEMRDIRGTAFI----VPHGWRPDEEWQEMDSSVVDIPGRVDPHLNPYQEIPEQAA 262 Query: 230 NTT-------------QAHQTALLSFLQDLARTVRQIPTRYAPVRHFVLNYSDSSKRRPL 90 T ++ + L + A+TV +IP Y V H + Y+ +S+ L Sbjct: 263 EATKGIDPSKPQVIRIESREERLAKRRAERAKTVIRIPA-YEAVAHDPVLYAHASRTLHL 321 Query: 89 -GQSRSARPVVLKQGE 45 +AR +V GE Sbjct: 322 ESNPGNARALVQMHGE 337
>NU5M_HUMAN (P03915) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = -2 Query: 325 SPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRF*AFFRIWPELFGRFPRVT 146 SP + ++P++L + ++ +GL++ NYL + +K F+ + + G +P +T Sbjct: 476 SPFQTTIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFY--FSNMLGFYPSIT 533 Query: 145 H---PFATLFSTIPIP 107 H P+ L ++ +P Sbjct: 534 HRTIPYLGLLTSQNLP 549
>CG1_HUMAN (Q13495) CG1 protein (F18)| Length = 701 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/87 (24%), Positives = 35/87 (40%) Frame = -1 Query: 326 ESGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTVRQIPTRY 147 E GP PS+ ++P+ H+L QP P Q + T + LQ + +Q P Sbjct: 478 EPGPQKMPSMPTTSRQPSLLHYLQQPTPTQASSATASSTATATLQLQQQQQQQQQQPDHS 537 Query: 146 APVRHFVLNYSDSSKRRPLGQSRSARP 66 + + ++ +R S A P Sbjct: 538 SFLLQQMMQQPQRFQRSVASDSMPALP 564
>YB00_YEAST (P38114) Probable transcriptional regulatory protein YBR150C| Length = 1094 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -1 Query: 395 HSRDIAGSGFRPLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLP 243 ++R + G + +P PP +G +SP ++ P +HH L +P Sbjct: 36 NTRVLMGPAVPAMPPVPSNFPPVPTGTIMSPQLSPFPDHRLRHHPLAHMMP 86
>DMN_HUMAN (O15061) Desmuslin| Length = 1565 Score = 29.6 bits (65), Expect = 3.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 110 SSKRRPLGQSRSARPVVLKQGETTLARSLFSFCPAP 3 S P G SRS R V L G++ L+R + PAP Sbjct: 1159 SQAASPTGASRSVRHVTLGPGQSPLSREVIFLGPAP 1194
>TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily member 19L| precursor (Receptor expressed in lymphoid tissues) Length = 430 Score = 29.3 bits (64), Expect = 4.8 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 25/84 (29%) Frame = -1 Query: 395 HSRDIAGSGFRPLSKI-------PHCCPPWE-----------SGPCLS-------PSVAD 291 HS+ + + RP+SK+ PH CP SGPC S P V Sbjct: 249 HSKQLVQTSHRPVSKLPPAPPNVPHICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLL 308 Query: 290 HPKRPAKHHWLGQPLPDQLPNTTQ 219 P+ A P+P LPN T+ Sbjct: 309 SPEAVA----ATTPVPSLLPNPTR 328
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Frame = -1 Query: 332 PWESGPCLSPSVADHP----KRPAKHHWLGQPLPDQ 237 P+ GP SP V HP R A+HH P P Q Sbjct: 216 PYNGGPAQSPQVPTHPTPDHTRMAQHHQPPPPPPSQ 251
>NPD1_THETN (Q8R9N6) NAD-dependent deacetylase 1 (EC 3.5.1.-) (Regulatory| protein SIR2 homolog 1) Length = 242 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -1 Query: 362 PLSKIPHCCPPWESGPCLSPSVADHPKRPAKHHWLGQPLP-DQLPNTTQAHQTA 204 PLSKIP CP + G + P V W G+PLP D+L + Q A Sbjct: 138 PLSKIPPECP--KCGSIVRPDVV----------WFGEPLPSDKLTEAMELSQRA 179
>T5377_BACST (Q45620) Probable transposase for insertion sequence element IS5377| Length = 377 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +1 Query: 22 KRLLAKVVSPCFKTTGRALRL*PNGLRLLES 114 KRLLA ++S C + T R+LR P LR+++S Sbjct: 89 KRLLALIISKCNRQTRRSLRF-PKPLRVVDS 118
>NU5M_GORGO (P03917) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Frame = -2 Query: 346 PTAAPRGSPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRF*AFFRIWPELF 167 PT+ P+ +++P++L + ++++GL++ NYL + +K F+ + + Sbjct: 474 PTSVPQ-----MTIPLYLKLTALSITLLGLLTALDLNYLTNKLKMKHPPHTFY--FSNML 526 Query: 166 GRFPRVTH---PFATLFSTIPIP 107 G +P +TH P+ L + +P Sbjct: 527 GFYPNITHRTIPYLGLLMSQNLP 549
>ATS4_MOUSE (Q8BNJ2) ADAMTS-4 precursor (EC 3.4.24.82) (A disintegrin and| metalloproteinase with thrombospondin motifs 4) (ADAM-TS 4) (ADAM-TS4) (Aggrecanase 1) Length = 833 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -1 Query: 290 HPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTVRQIP 156 HP+R HWL + P +T Q + LL+FL LA +P Sbjct: 7 HPRRGLTGHWLQRFQPCLPLHTVQWRRLLLLAFLLSLAWPASPLP 51
>CI090_MOUSE (Q6PFD7) Protein C9orf90 homolog| Length = 327 Score = 28.9 bits (63), Expect = 6.3 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -1 Query: 323 SGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTV--RQIPTR 150 SG ++P + P + + LG+ LP+TT+ H AL S A TV QIPT Sbjct: 116 SGTAIAPVLLT-PMQQRICNLLGEATIISLPSTTEIHPVALGSTATTAAATVTLTQIPTE 174 Query: 149 --YAPVRHFVLNYSDSSKRRPL 90 Y + V+ Y + PL Sbjct: 175 TTYHTLEEGVVEYCTAEAPPPL 196
>ROM1_BOVIN (P52205) Rod outer segment membrane protein 1 (ROSP1)| Length = 351 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/58 (32%), Positives = 23/58 (39%) Frame = -1 Query: 341 CCPPWESGPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALLSFLQDLARTV 168 CC P PCL ++D P L P L +Q LL LQ LA T+ Sbjct: 216 CCNPHSPRPCLQSQLSDPHAHP-----LFDPRQPNLNLWSQGCHEVLLGHLQGLASTL 268
>PDM2_DROVI (Q24705) POU domain protein 2 (didymous protein) (Pdm-2) (dPOU-28)| (dOct2) (miti-mere) (Fragment) Length = 471 Score = 28.5 bits (62), Expect = 8.2 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 12/89 (13%) Frame = -1 Query: 254 QPLPDQLPNTTQAHQTALLSFLQDLA----------RTVRQIPT--RYAPVRHFVLNYSD 111 Q PD PN A Q L + LQ LA + +Q+PT P RH+ S Sbjct: 111 QLAPDAFPNPNLATQFLLQNSLQALAQFQALQQLKQQRDQQLPTASEQLPTRHYSTPLSK 170 Query: 110 SSKRRPLGQSRSARPVVLKQGETTLARSL 24 S R P S AR + +Q + T SL Sbjct: 171 SPLRSP-SLSPVARSMEPQQAQRTPPNSL 198
>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1| Length = 657 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 355 PRFPTAAPRGSPGRVSVPVWL 293 P PT+ P G PG VS P WL Sbjct: 52 PASPTSGPVGRPGGVSGPSWL 72
>ZHX1_MOUSE (P70121) Zinc fingers and homeoboxes protein 1| Length = 873 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 Query: 37 KVVSPCFKTTGRALRL*PNGLRLLESE*LRTKW 135 + V+P TG+ + P L +L+S +RT+W Sbjct: 652 ETVAPKSGGTGKICKKTPEQLHMLKSAFVRTQW 684 Score = 23.1 bits (48), Expect(2) = 9.8 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 Query: 143 VRNAWESAEQFGPNPEESSKALFD 214 VR W SAE++ EES A D Sbjct: 680 VRTQWPSAEEYDKLAEESGLARTD 703 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,570,501 Number of Sequences: 219361 Number of extensions: 1418222 Number of successful extensions: 4176 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4176 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
