>ACHE_BOVIN (P02715) Acetylcholine receptor protein, epsilon subunit precursor|
          Length = 491

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 91  TAHAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRA 234
           T HA +P  +       P LL S  PP+IP +A+     S +G + RA
Sbjct: 334 TTHAMSPRLRYVLLELLPQLLGSGAPPEIPRAASPPRRASSLGLLLRA 381

>RL2_SHEON (Q8EK65) 50S ribosomal protein L2|
          Length = 274

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 310 TSPARRHNATLPNHGIDRGQQNFEGLLAERGRWGIRGCTVRL 185
           TSP RRH   + N  + +G+  F GLLA++ + G R  T R+
Sbjct: 9   TSPGRRHVVKVVNSDLHKGKP-FAGLLAKKSKSGGRNNTGRI 49

>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1904

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 97  HAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRANP 240
           H ++ H  +T++++  H L S   P +PN     S G+P GPV  A P
Sbjct: 96  HNHSHHNTSTSSAN--HSLQSPPRPALPNPYMSSSTGAPGGPVAPALP 141

>UNG_HHV2H (P28275) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 255

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 145 HLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAPDR 264
           H  ++IRP    +   ++SH SP+  VP    Q+F A +R
Sbjct: 202 HAQNAIRPDPRQHYVLKFSHPSPLSKVPFGTCQHFLAANR 241

>UNG_HHV23 (P13158) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 294

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 145 HLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAPDR 264
           H  ++IRP    +   ++SH SP+  VP    Q+F A +R
Sbjct: 242 HAQNAIRPDPRQHYVLKFSHPSPLSKVPFGTCQHFLAANR 281

>PSP1_PSEIC (O61704) Plasmatocyte-spreading peptide precursor|
          Length = 141

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 355 PNSQTPGPIL-TSTRGTSPARRHNATLPNHGIDRGQQNFEG 236
           P + TP P++ T+T+ ++P    N T      D+G++NF G
Sbjct: 83  PVAVTPAPVVSTTTQASAPTVATNGTATGGKDDKGRENFNG 123

>HYDL_STRCO (P42534) Putative polyketide hydroxylase (EC 1.14.13.-) (WhiE ORF|
           VIII)
          Length = 627

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 428 SPVLPIGLTLTGRPASNPPH 369
           +PV+P GL LTG P S  PH
Sbjct: 493 TPVVPEGLDLTGAPGSRAPH 512

>OPHN1_MOUSE (Q99J31) Oligophrenin 1|
          Length = 802

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 94  AHAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPV 225
           +H   P+   T+N  PP LL  ++PP   +        SP  PV
Sbjct: 614 SHHQTPNGTITSNLDPPKLLQHLKPPMQKSGETDPGRKSPSRPV 657

>LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog)|
          Length = 3801

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 85   LRTAHAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGP 222
            LR   A     +TTAN    +L DS++ P  P+ A      S  GP
Sbjct: 2550 LRVLQAAMEFIRTTANHDSENLTDSLQSPSAPHHAVVQKRKSIAGP 2595

>PTH_SYMTH (Q67JD0) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 189

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 340 PGPILTSTRGTSPARRHNATLPNHGIDRGQQNFEGLLAERGRWG 209
           PGP   +TR  +     +A    HG+   Q+ FEGL  E  RWG
Sbjct: 11  PGPRYAATRHNAGWMLLDAFARKHGVAIEQRGFEGLYGEL-RWG 53

>ACHE_HUMAN (Q04844) Acetylcholine receptor protein, epsilon subunit precursor|
          Length = 493

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 91  TAHAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRA 234
           T HA +P  +       P LL S  PP+ P +A+     S +G + RA
Sbjct: 334 TTHAMSPRLRHVLLELLPRLLGSPPPPEAPRAASPPRRASSVGLLLRA 381

>EBNA4_EBV (P03203) Epstein-Barr nuclear antigen 4 (EBV nuclear antigen 4)|
           (EBNA-4) (EBNA-3B)
          Length = 938

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = +1

Query: 103 YAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSP-------IGPVPRANPQNFAAP 258
           +AP T  T    PP     + PP++P    Q   G+P       + PVPR  P+    P
Sbjct: 689 WAPATMQT----PPRAPTPMSPPEVPPVPRQRPRGAPTPTPPPQVPPVPRQRPRGAPTP 743

>MAAY4_SCHCO (P37935) Mating-type protein A-alpha Y4|
          Length = 928

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 464 AKEPESRRFRSGSPVLPIGLTLTGRPASNPPHAEEPPKLTNTRTN 330
           +++P +++  S SP    G    GRP+SN   +  PP   ++R N
Sbjct: 411 SRKPSAQKPSSDSPRKDFGQLGKGRPSSNSTSSTVPPHRVSSRLN 455

>ERFB_EMENI (Q5B3W7) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein erf2) (Ras protein
           acyltransferase)
          Length = 601

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 109 PHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAPDR 264
           P +  T N+  PH+L   RPP +   +++ +  S  G   + N  +   P R
Sbjct: 9   PESNETTNNPAPHVLGLPRPPSVGGISSRVTDMSEDGDQSQTNTMSSHVPHR 60

>ACHE_MOUSE (P20782) Acetylcholine receptor protein, epsilon subunit precursor|
          Length = 493

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 91  TAHAYAPHTKTTANSHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRA 234
           T HA +P  +       P LL S  PP+ P +A+     S +G + RA
Sbjct: 334 TTHATSPRLRQILLELLPRLLGSSPPPEDPRTASPARRASSVGILLRA 381

>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 124 TANSHPP----HLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAP 258
           +A+SH P      + SI PP  P +    + G P+ PVP     +F+AP
Sbjct: 759 SASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAP 807

>ZBED4_HUMAN (O75132) Zinc finger BED domain-containing protein 4|
          Length = 1171

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 133 SHPPHLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAPDR 264
           S PP LL S+ PP+   S+      SP+ PV R +P   ++PDR
Sbjct: 353 STPPTLLPSLLPPEGELSSVS---SSPVKPV-RESPSASSSPDR 392

>DPOL_BPSP1 (P30314) DNA polymerase (EC 2.7.7.7)|
          Length = 924

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 404 TLTGRPASNPPHAEEPPKLTNTRT 333
           T+TGR +SN P+A++ P+  NT T
Sbjct: 586 TVTGRLSSNEPNAQQFPRKVNTPT 609

>UNG_HHV11 (P10186) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 334

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 145 HLLDSIRPPKIPNSAAQYSHGSPIGPVPRANPQNFAAPDR 264
           H  ++IRP    +   ++SH SP+  VP    Q+F   +R
Sbjct: 281 HAQNAIRPDPRVHCVLKFSHPSPLSKVPFGTCQHFLVANR 320

>RAD52_DEBHA (Q6BJ51) DNA repair and recombination protein RAD52|
          Length = 573

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 88  RTAHAYAPHTKTTANSHPPHLLDSIRP-PKIPNSAAQYSHGSPIGPVPRANP 240
           R+  + APH K   N  PP LL+   P P I NS         IG  P   P
Sbjct: 461 RSEISQAPHDKPRTNIGPPKLLNRASPGPTISNSNTNNLGKRMIGLPPSQKP 512

>AHM3_ARATH (Q9SZW4) Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 951

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 399 NRSSGLQSAACGGAS-QTHKHPDQSS 325
           N+ SGL S  CGG S Q H+H  Q S
Sbjct: 820 NKPSGLDSGCCGGKSQQPHQHELQQS 845


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,142,809
Number of Sequences: 219361
Number of extensions: 1109778
Number of successful extensions: 4791
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4789
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)