ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ... 28 7.6
2VGP_EBOIC (Q66810) Structural glycoprotein precursor (Virion spi... 27 9.9

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 1    PFPSSPRERFSKTLPRRSTPFLPIPPTQ 84
            P   SP+    K +PR  +P LP PP +
Sbjct: 3439 PAKESPKPEEQKNVPRELSPLLPKPPEE 3466



to top

>VGP_EBOIC (Q66810) Structural glycoprotein precursor (Virion spike|
           glycoprotein) [Contains: GP1; GP2]
          Length = 676

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 19  RERFSKTLPRRSTPFLPIPPTQN 87
           ++ F+KTL      F+P+P TQN
Sbjct: 294 KKNFTKTLSSEELSFVPVPETQN 316


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,070,594
Number of Sequences: 219361
Number of extensions: 194430
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top