ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03b03 |
|---|---|
| Clone Library Name | barley_pub |
>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) Length = 762 Score = 234 bits (598), Expect = 7e-62 Identities = 117/127 (92%), Positives = 117/127 (92%) Frame = +3 Query: 99 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPXXXXXXXXXKNGYGDYLIEEEE 278 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTP KNGYGDYLIEEEE Sbjct: 1 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAAAGAKNGYGDYLIEEEE 60 Query: 279 GLNDHNVVVKCAEIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQP 458 GLNDHNVVVKCAEIQTAIS GATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQP Sbjct: 61 GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQP 120 Query: 459 CTYSKGT 479 CTYSKGT Sbjct: 121 CTYSKGT 127
>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) Length = 764 Score = 176 bits (446), Expect = 3e-44 Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 1/125 (0%) Frame = +3 Query: 102 AILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPXXXXX-XXXXKNGYGDYLIEEEE 278 AIL +LGTEILIPVC VIGI FA+ QW +VSKVK++ KNGY DYLIEEEE Sbjct: 3 AILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEE 62 Query: 279 GLNDHNVVVKCAEIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQP 458 G+NDHNVVVKCAEIQ AIS GATSFLFT Y+YVG+FMV FA +IFLFLGS+EGFST Q Sbjct: 63 GINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQA 122 Query: 459 CTYSK 473 C+Y K Sbjct: 123 CSYDK 127
>AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane proton pump 1| (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) Length = 770 Score = 172 bits (437), Expect = 3e-43 Identities = 83/130 (63%), Positives = 102/130 (78%), Gaps = 4/130 (3%) Frame = +3 Query: 90 LTAMAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPXXXXXXXXX----KNGYGD 257 + A A+L EL TEIL+P+C VIGI F++ QW++VS+VK+T KNGYGD Sbjct: 1 MVAPALLPELWTEILVPICAVIGIAFSLFQWYVVSRVKLTSDLGASSSGGANNGKNGYGD 60 Query: 258 YLIEEEEGLNDHNVVVKCAEIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEG 437 YLIEEEEG+ND +VV KCAEIQTAIS GATSFLFT Y+YVG+FM+ FAA+IF+FLGS+EG Sbjct: 61 YLIEEEEGVNDQSVVAKCAEIQTAISEGATSFLFTEYKYVGVFMIFFAAVIFVFLGSVEG 120 Query: 438 FSTKGQPCTY 467 FST +PCTY Sbjct: 121 FSTDNKPCTY 130
>HPPA2_RHOPA (Q8KY01) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 725 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 315 EIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFLGSI 431 EI AI GA ++L Y+ + + V A +IF FLG + Sbjct: 40 EIAGAIQQGAAAYLARQYKTIAIVGAVLAILIFFFLGGL 78
>HPPA1_METAC (Q8TJA9) Pyrophosphate-energized proton pump 1 (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase 1) (H+-PPase 1) (Membrane-bound proton-translocating pyrophosphatase 1) Length = 676 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/97 (26%), Positives = 40/97 (41%) Frame = +3 Query: 132 LIPVCGVIGIVFAVAQWFIVSKVKVTPXXXXXXXXXKNGYGDYLIEEEEGLNDHNVVVKC 311 L P+C +IG++FA + V G G+ LI+ Sbjct: 7 LAPICALIGLIFAGISYKNVQ---------------NEGAGNDLIK-------------- 37 Query: 312 AEIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFL 422 +I +I GGA +L Y+ + +F+V A II L L Sbjct: 38 -KITASIHGGAMVYLNRQYRAIAVFVVFLAIIIALIL 73
>HPPA1_METMA (Q8PYZ8) Pyrophosphate-energized proton pump 1 (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase 1) (H+-PPase 1) (Membrane-bound proton-translocating pyrophosphatase 1) Length = 676 Score = 31.2 bits (69), Expect = 1.5 Identities = 25/97 (25%), Positives = 40/97 (41%) Frame = +3 Query: 132 LIPVCGVIGIVFAVAQWFIVSKVKVTPXXXXXXXXXKNGYGDYLIEEEEGLNDHNVVVKC 311 L P+C +IG++FA + V G G+ LI+ Sbjct: 7 LTPICALIGLIFAGISYKNV---------------RNEGEGNELIK-------------- 37 Query: 312 AEIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFL 422 +I AI GGA +L Y+ + +F+V A ++ L L Sbjct: 38 -KITAAIHGGAMVYLNRQYRAIAVFVVFIAIVLALVL 73
>HPPA_CLOTE (Q898Q9) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 673 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +3 Query: 315 EIQTAISGGATSFLFTMYQYVGMFMVVFAAIIFLFLG 425 EI I GA +FL T Y+Y+ F+V+ I+ +F+G Sbjct: 38 EIAGHIHDGAMAFLKTEYKYLTGFIVIVTVILAIFVG 74
>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing| protein 1) (Beta-interferon gene positive-regulatory domain I-binding factor) (BLIMP-1) (Positive regulatory domain I-binding factor 1) (PRDI-binding factor 1) (PRDI-BF1) Length = 789 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -1 Query: 454 WPFVLNPSIDPRKRKIIAAKTTMNIPTYWYMVKRNDVAPPEMAVW 320 W +NP+ PR++ + A + MNI Y+Y +K A E+ VW Sbjct: 122 WMRYVNPAHSPREQNLAACQNGMNI--YFYTIKPIP-ANQELLVW 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,668,112 Number of Sequences: 219361 Number of extensions: 568173 Number of successful extensions: 1985 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1979 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
