Clone Name | bastl03a09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence Length = 172228 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 agagatgcagatgtgtgtgtga 417 |||||||||||||||||||||| Sbjct: 34198 agagatgcagatgtgtgtgtga 34177
>ref|XM_852677.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 13 (LOC480194), mRNA Length = 2917 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_852594.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 12 (LOC480194), mRNA Length = 2941 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_843878.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 5 (LOC480194), mRNA Length = 2971 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_852476.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 10 (LOC480194), mRNA Length = 2914 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_852435.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 9 (LOC480194), mRNA Length = 2926 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_852393.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 8 (LOC480194), mRNA Length = 2887 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>ref|XM_852353.1| PREDICTED: Canis familiaris similar to discs large homolog-associated protein 1 isoform beta, transcript variant 7 (LOC480194), mRNA Length = 2938 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cacgcagcgcaactccttccag 178 |||||||||||||||||||||| Sbjct: 148 cacgcagcgcaactccttccag 169
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 312 gttgcgtggcaagcaagatatatata 337 ||||| |||||||||||||||||||| Sbjct: 113561 gttgcttggcaagcaagatatatata 113536
>emb|CR847524.5| Zebrafish DNA sequence from clone DKEY-77M9 in linkage group 14, complete sequence Length = 149148 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 agatctgctgctgctcgtgctg 312 |||||||||||||||||||||| Sbjct: 51879 agatctgctgctgctcgtgctg 51858
>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence Length = 184560 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 396 agagatgcagatgtgtgtgtga 417 |||||||||||||||||||||| Sbjct: 278 agagatgcagatgtgtgtgtga 299
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 312 gttgcgtggcaagcaagatatatata 337 ||||| |||||||||||||||||||| Sbjct: 31940695 gttgcttggcaagcaagatatatata 31940670
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 tctgctgctgctcgtgctgttg 315 |||||||||||||||||||||| Sbjct: 1868877 tctgctgctgctcgtgctgttg 1868856
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 tctgctgctgctcgtgctgttg 315 |||||||||||||||||||||| Sbjct: 69355 tctgctgctgctcgtgctgttg 69334
>gb|AC154643.2| Mus musculus BAC clone RP23-277M12 from 13, complete sequence Length = 182420 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 tatacccctctctccatatata 355 |||||||||||||||||||||| Sbjct: 35521 tatacccctctctccatatata 35542
>dbj|AK065819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D01, full insert sequence Length = 2343 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 gttgcgtggcaagcaagatatatata 337 ||||| |||||||||||||||||||| Sbjct: 306 gttgcttggcaagcaagatatatata 331
>dbj|AB101645.1| Oryza sativa (japonica cultivar-group) Roc2 mRNA for GL2-type homeodomain protein, complete cds Length = 3063 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 gttgcgtggcaagcaagatatatata 337 ||||| |||||||||||||||||||| Sbjct: 68 gttgcttggcaagcaagatatatata 93
>emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in linkage group 14, complete sequence Length = 231054 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 agatctgctgctgctcgtgctg 312 |||||||||||||||||||||| Sbjct: 109893 agatctgctgctgctcgtgctg 109872
>gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, complete sequence Length = 158043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 tgtgtgtgtgaagaaatggaa 427 ||||||||||||||||||||| Sbjct: 44498 tgtgtgtgtgaagaaatggaa 44478
>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence Length = 226006 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 tgtgtgtgtgaagaaatggaa 427 ||||||||||||||||||||| Sbjct: 3955 tgtgtgtgtgaagaaatggaa 3935
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 tgctgctgctcgtgctgttgc 316 ||||||||||||||||||||| Sbjct: 3207361 tgctgctgctcgtgctgttgc 3207341
>gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, complete sequence Length = 196977 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 tgtgtgtgtgaagaaatggaa 427 ||||||||||||||||||||| Sbjct: 8712 tgtgtgtgtgaagaaatggaa 8732
>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence Length = 182627 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 327 agatatatatacccctctctccatatata 355 |||||||||||| |||||||| ||||||| Sbjct: 99617 agatatatatacacctctctctatatata 99589
>gb|AC130536.4| Mus musculus BAC clone RP23-369M17 from 13, complete sequence Length = 188021 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 agatgcagatgtgtgtgtgaa 418 ||||||||||||||||||||| Sbjct: 10334 agatgcagatgtgtgtgtgaa 10314
>emb|CT486008.9| Mouse DNA sequence from clone RP24-112G3 on chromosome 17, complete sequence Length = 129106 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 405 gatgtgtgtgtgaagaaatggaagg 429 |||||||||||||||||||| |||| Sbjct: 24942 gatgtgtgtgtgaagaaatgcaagg 24918
>gb|AC131187.4| Mus musculus BAC clone RP24-250M7 from 13, complete sequence Length = 159288 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 agatgcagatgtgtgtgtgaa 418 ||||||||||||||||||||| Sbjct: 128679 agatgcagatgtgtgtgtgaa 128659
>gb|BC056534.1| Danio rerio tissue inhibitor of metalloproteinase 2, like, mRNA (cDNA clone MGC:65967 IMAGE:6791963), complete cds Length = 1899 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 tctgctgctgctcgtgctgt 313 |||||||||||||||||||| Sbjct: 123 tctgctgctgctcgtgctgt 142
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ctgctgctgctcgtgctgtt 314 |||||||||||||||||||| Sbjct: 29660 ctgctgctgctcgtgctgtt 29641
>ref|XM_854820.1| PREDICTED: Canis familiaris similar to zinc finger protein 608, transcript variant 2 (LOC481484), mRNA Length = 6033 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgctgctgctcgtgctgttg 315 |||||||||||||||||||| Sbjct: 682 tgctgctgctcgtgctgttg 663
>ref|XM_538605.2| PREDICTED: Canis familiaris similar to zinc finger protein 608, transcript variant 1 (LOC481484), mRNA Length = 6002 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgctgctgctcgtgctgttg 315 |||||||||||||||||||| Sbjct: 651 tgctgctgctcgtgctgttg 632
>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9, complete sequence Length = 210207 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tgtactacaccatctttgtt 382 |||||||||||||||||||| Sbjct: 114370 tgtactacaccatctttgtt 114351
>emb|BX021318.1|CNS08OM2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA31CD12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 691 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ggggaaggagagagatgcag 405 |||||||||||||||||||| Sbjct: 226 ggggaaggagagagatgcag 207
>gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, complete sequence Length = 206395 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 ggaggggaaggagagagatg 402 |||||||||||||||||||| Sbjct: 60977 ggaggggaaggagagagatg 60996
>dbj|AK122974.1| Homo sapiens cDNA FLJ16721 fis, clone UTERU3001632, weakly similar to Homo sapiens zinc finger protein 135 (clone pHZ-17) (ZNF135) Length = 4409 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 ggaggggaaggagagagatg 402 |||||||||||||||||||| Sbjct: 3505 ggaggggaaggagagagatg 3486
>gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, complete sequence Length = 174372 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 ggagagagatgcagatgtgtgtgt 415 |||||||||| ||||||||||||| Sbjct: 53868 ggagagagatccagatgtgtgtgt 53891
>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21, complete sequence Length = 171606 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 gagatgcagatgtgtgtgtg 416 |||||||||||||||||||| Sbjct: 50526 gagatgcagatgtgtgtgtg 50507
>ref|NM_001029162.2| Caenorhabditis elegans C02C6.2a (C02C6.2) mRNA, complete cds Length = 2508 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atgcagatgtgtgtgtgaag 419 |||||||||||||||||||| Sbjct: 1902 atgcagatgtgtgtgtgaag 1883
>emb|AL935286.14| Zebrafish DNA sequence from clone CH211-198E14 in linkage group 22, complete sequence Length = 211297 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgtcctagatctctctctct 262 |||||||||||||||||||| Sbjct: 96913 cgtcctagatctctctctct 96932
>ref|XM_315491.2| Anopheles gambiae str. PEST ENSANGP00000021218 (ENSANGG00000018729), partial mRNA Length = 3450 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 atctgctgctgctcgtgctg 312 |||||||||||||||||||| Sbjct: 3266 atctgctgctgctcgtgctg 3285
>emb|AL840629.24| Mouse DNA sequence from clone RP23-334A5 on chromosome 4, complete sequence Length = 214140 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 gtgtgtgtgaagaaatggaa 427 |||||||||||||||||||| Sbjct: 189383 gtgtgtgtgaagaaatggaa 189364
>emb|Z79596.1|CEC02C6 Caenorhabditis elegans Cosmid C02C6, complete sequence Length = 43379 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atgcagatgtgtgtgtgaag 419 |||||||||||||||||||| Sbjct: 11580 atgcagatgtgtgtgtgaag 11561
>emb|AL645974.7| Mouse DNA sequence from clone RP23-249M13 on chromosome 11, complete sequence Length = 136134 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 tctgctgctgctcgtgctgt 313 |||||||||||||||||||| Sbjct: 35819 tctgctgctgctcgtgctgt 35838 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,397,218 Number of Sequences: 3902068 Number of extensions: 9397218 Number of successful extensions: 106382 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106217 Number of HSP's gapped (non-prelim): 165 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)