Clone Information

BLAST Search Result

Clone Name	bastl02h10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_477026.1\| Oryza sativa (japonica cultivar-group), mRNA	341	1e-90
2	dbj\|AK100095.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	341	1e-90
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	2e-33
4	dbj\|AP005259.3\| Oryza sativa (japonica cultivar-group) genomic D...	151	2e-33
5	gb\|AC126333.7\| Homo sapiens chromosome 8, clone RP11-666I19, com...	44	0.37
6	gb\|AF188030.5\| Homo sapiens chromosome 8 clone RP4-593A12 map p2...	44	0.37
7	gb\|AF214636.4\| Homo sapiens chromosome 8 clone RP4-605G11 map p2...	44	0.37
8	gb\|AC135112.5\| Mus musculus BAC clone RP23-477F17 from chromosom...	44	0.37
9	gb\|AY123972.1\| Arthrobacter sp. BP2 cyclohexanone oxidation gene...	44	0.37
10	emb\|BX294183.17\| Mouse DNA sequence from clone RP24-388B10 on ch...	44	0.37
11	gb\|AC154247.2\| Mus musculus BAC clone RP24-176G22 from chromosom...	44	0.37
12	dbj\|AB039951.1\| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ...	44	0.37
13	dbj\|AB010576.1\| Bacillus subtilis ComX, ComQ and DegQ genes, com...	44	0.37
14	ref\|XM_472252.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.5
15	gb\|AE009089.1\| Agrobacterium tumefaciens str. C58 circular chrom...	42	1.5
16	gb\|AY519500.1\| Gallus gallus CNR/Pcdh-alpha gene cluster, comple...	42	1.5
17	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	42	1.5
18	emb\|AL731619.3\|OSJN00267 Oryza sativa genomic DNA, chromosome 4,...	42	1.5
19	gb\|AE007869.1\| Agrobacterium tumefaciens str. C58, complete genome	42	1.5
20	gb\|AC090649.4\| Genomic sequence for Mus musculus, clone RP23-361...	42	1.5
21	ref\|NG_004818.1\| Gallus gallus cadherin-related neuronal recepto...	42	1.5
22	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
23	emb\|AL662977.3\|OSJN00176 Oryza sativa genomic DNA, chromosome 4,...	42	1.5
24	gb\|AC008254.7\|AC008254 Drosophila melanogaster, chromosome 3R, r...	42	1.5
25	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	42	1.5
26	gb\|AE003680.4\| Drosophila melanogaster chromosome 3R, section 18...	42	1.5
27	ref\|NM_187618.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.8
28	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	5.8
29	gb\|AC128644.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.8
30	gb\|AC133954.3\| Mus musculus BAC clone RP23-154C17 from chromosom...	40	5.8
31	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	5.8
32	gb\|AC132100.3\| Mus musculus BAC clone RP24-294D10 from chromosom...	40	5.8
33	emb\|AL591785.1\|SME591785 Sinorhizobium meliloti 1021 complete ch...	40	5.8
34	gb\|AC104473.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.8
35	emb\|CR848714.6\| Wallaby DNA sequence from clone MEKBa-460J13, co...	40	5.8
36	gb\|AC156498.2\| Mus musculus BAC clone RP24-300J13 from chromosom...	40	5.8
37	gb\|AC151605.2\| Emiliania huxleyi clone JGIACCU-13A3, complete se...	40	5.8
38	gb\|U65510.1\|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r...	40	5.8
39	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	5.8
40	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
41	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
42	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.8
43	gb\|AC104648.2\| Homo sapiens BAC clone RP11-45D4 from 2, complete...	40	5.8
44	dbj\|AP005260.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
45	ref\|XM_316442.2\| Anopheles gambiae str. PEST ENSANGP00000021115 ...	40	5.8
46	ref\|XM_313144.2\| Anopheles gambiae str. PEST ENSANGP00000013219 ...	40	5.8
47	dbj\|AK068454.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.8
48	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.8
49	emb\|AL590430.8\| Mouse DNA sequence from clone RP23-384K10 on chr...	40	5.8
50	emb\|AL732513.8\| Mouse DNA sequence from clone RP23-344B24 on chr...	40	5.8
51	dbj\|AB046872.1\| Physcomitrella patens Sig2 mRNA for PpSIG2, comp...	40	5.8
52	dbj\|AB059356.1\| Physcomitrella patens Sig2 gene for PpSIG2, comp...	40	5.8

>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  341 bits (172), Expect = 1e-90
 Identities = 235/256 (91%)
 Strand = Plus / Plus

                                                                       
Query: 180 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 239
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 240 tcgccgtccctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 299
           ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 300 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 359
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 360 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 419
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                           
Query: 420 tttcagtccaaggatg 435
           ||||| ||||||||||
Sbjct: 467 tttcaatccaaggatg 482

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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  341 bits (172), Expect = 1e-90
 Identities = 235/256 (91%)
 Strand = Plus / Plus

                                                                       
Query: 180 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 239
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 240 tcgccgtccctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 299
           ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 300 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 359
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 360 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 419
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                           
Query: 420 tttcagtccaaggatg 435
           ||||| ||||||||||
Sbjct: 467 tttcaatccaaggatg 482

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                           
Query: 230     agagtactactcgccgtccctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 289
               ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893

                                                           
Query: 290     cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 333
               |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 5484894 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 5484937



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 328     aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 383
               |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 5485026 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 5485081



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 180     gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 231
               |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                        
Query: 379     aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatg 435
               |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||
Sbjct: 5485742 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatg 5485798



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 27       cttcctcctctctcctgttc 46
                ||||||||||||||||||||
Sbjct: 10754361 cttcctcctctctcctgttc 10754380

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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                          
Query: 230    agagtactactcgccgtccctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 289
              ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874

                                                          
Query: 290    cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 333
              |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 118875 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 118918



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                      
Query: 328    aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 383
              |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 119007 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 119062



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 180    gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 231
              |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                       
Query: 379    aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatg 435
              |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||
Sbjct: 119723 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatg 119779

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>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 25    ctcttcctcctctctcctgttc 46
             ||||||||||||||||||||||
Sbjct: 22687 ctcttcctcctctctcctgttc 22708

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>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    ctcttcctcctctctcctgttc 46
             ||||||||||||||||||||||
Sbjct: 93539 ctcttcctcctctctcctgttc 93518

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>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    ctcttcctcctctctcctgttc 46
             ||||||||||||||||||||||
Sbjct: 11821 ctcttcctcctctctcctgttc 11800

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>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete
              sequence
          Length = 178498

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 24     cctcttcctcctctctcctgttcagtcctc 53
              ||||||||||||||||||| || |||||||
Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155

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>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial
            sequence
          Length = 8975

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 264  ggtgccgtcctgcaggaggccc 285
            ||||||||||||||||||||||
Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690

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>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete
              sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 24     cctcttcctcctctctcctgttcagtcctc 53
              ||||||||||||||||||| || |||||||
Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227

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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    tctcctgttcagtcctccctcg 58
             ||||||||||||||||||||||
Sbjct: 60120 tctcctgttcagtcctccctcg 60141

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>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 78  ctcgcgggagctctcgcgccgc 99
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

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>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 78  ctcgcgggagctctcgcgccgc 99
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

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>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 94  cgccgccccgctccgccgccg 114
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160

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>gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 115
            of 256 of the complete sequence
          Length = 10144

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 287  cgtcttccacgacccgcagcttgatgcgc 315
            |||||||| ||||| ||||||||||||||
Sbjct: 1595 cgtcttccgcgacctgcagcttgatgcgc 1567

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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ccccgctccgccgccgttctc 119
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 273     ctgcaggaggcccgcgtcttc 293
               |||||||||||||||||||||
Sbjct: 4382506 ctgcaggaggcccgcgtcttc 4382526

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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   cgccgccccgctccgccgccg 114
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886

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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 287     cgtcttccacgacccgcagcttgatgcgc 315
               |||||||| ||||| ||||||||||||||
Sbjct: 1257267 cgtcttccgcgacctgcagcttgatgcgc 1257239

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>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence
          Length = 211611

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    cctcttcctcctctctcctgt 44
             |||||||||||||||||||||
Sbjct: 75898 cctcttcctcctctctcctgt 75878

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>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    ccccgctccgccgccgttctc 119
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 94       cgccgccccgctccgccgccg 114
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976

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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     cgccgccccgctccgccgccg 114
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139

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>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR02G22, complete sequence
          Length = 164982

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 29    tcctcctctctcctgttcagtcctc 53
             |||||||||||||||||| ||||||
Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 120    gcggcatagcggtcgacccgggcgc 144
              ||||||||||||||||| |||||||
Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774

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>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 29     tcctcctctctcctgttcagtcctc 53
              |||||||||||||||||| ||||||
Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261

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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 258 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 313
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 70  gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 125

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cgtcctgcaggaggcccgcg 288
              ||||||||||||||||||||
Sbjct: 506652 cgtcctgcaggaggcccgcg 506671

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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    gctccgccgccgttctcgcggcat 126
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322

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>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ctcttcctcctctctcctgt 44
              ||||||||||||||||||||
Sbjct: 135518 ctcttcctcctctctcctgt 135537

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 258     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 313
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6646031 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6646086

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>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    cctcctctctcctgttcagt 49
             ||||||||||||||||||||
Sbjct: 96813 cctcctctctcctgttcagt 96832

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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   atcgagaagggtgccgtcct 274
             ||||||||||||||||||||
Sbjct: 23174 atcgagaagggtgccgtcct 23155

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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 258   gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 313
             |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 31579 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 31634

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>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence
          Length = 186287

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ctcttcctcctctctcctgt 44
              ||||||||||||||||||||
Sbjct: 156270 ctcttcctcctctctcctgt 156251

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>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete
             sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 379   aggtagaggccacagaggtattct 402
             |||||||||||||||||| |||||
Sbjct: 98490 aggtagaggccacagaggaattct 98513

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>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcgcgccgccccgctccgcc 110
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295

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>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gcgccgccccgctccgccgc 112
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 93      gcgccgccccgctccgccgc 112
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 103     gctccgccgccgttctcgcggcat 126
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 258     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 313
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6645244 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6645299

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 95      gccgccccgctccgccgccg 114
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322

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>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ttcctcctctctcctgttca 47
             ||||||||||||||||||||
Sbjct: 47456 ttcctcctctctcctgttca 47475

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>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cttcctcctctctcctgttc 46
             ||||||||||||||||||||
Sbjct: 83807 cttcctcctctctcctgttc 83826

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>ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115
           (ENSANGG00000018626), partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 cgacccgcagcttgatgcgc 315
           ||||||||||||||||||||
Sbjct: 931 cgacccgcagcttgatgcgc 912

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>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219
           (ENSANGG00000010730), partial mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 atcgagaagggtgccgtcctgcag 278
           ||||| ||||||||||||||||||
Sbjct: 657 atcgataagggtgccgtcctgcag 634

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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 258 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 313
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 250 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 305

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 103     gctccgccgccgttctcgcggcat 126
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653

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>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete
             sequence
          Length = 144909

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tcttcctcctctctcctgtt 45
             ||||||||||||||||||||
Sbjct: 38565 tcttcctcctctctcctgtt 38546

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>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete
             sequence
          Length = 209452

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    gcctcttcctcctctctcct 42
             ||||||||||||||||||||
Sbjct: 54386 gcctcttcctcctctctcct 54405

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>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds
          Length = 2207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  cgcctcttcctcctctctcc 41
           ||||||||||||||||||||
Sbjct: 918 cgcctcttcctcctctctcc 899

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>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   cgcctcttcctcctctctcc 41
            ||||||||||||||||||||
Sbjct: 1427 cgcctcttcctcctctctcc 1408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,054,687
Number of Sequences: 3902068
Number of extensions: 3054687
Number of successful extensions: 78511
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 77758
Number of HSP's gapped (non-prelim): 753
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result