>PO24_POPJA (Q03275) Retrovirus-related Pol polyprotein from type-1|
           retrotransposable element R2 (Retrovirus-related Pol
           polyprotein from type I retrotransposable element R2)
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease] (Fragment)
          Length = 482

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 229 VDAFRVRGAVLQGRGVPAGAPGE 297
           +DA R+RG +L  RG+P+  P E
Sbjct: 276 IDAVRLRGNLLPTRGIPSNPPHE 298

>FTSK_RHIME (Q92L89) DNA translocase ftsK|
          Length = 881

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 140 ECSELPEPAAAPCRTVSSRHGADDAVGTVVSMLSGYAG-RFSKDAEFRRA 286
           E    PEPA +  RT+      +D  G +  ++   A  R++  A  RRA
Sbjct: 196 EAEPAPEPAPSKARTIRDELEEEDEEGPLTVLMGSLAHMRYTAQARLRRA 245

>GAS1_HUMAN (P54826) Growth-arrest-specific protein 1 precursor (GAS-1)|
          Length = 345

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 140 ECSELPEPAAAPCRTVSSRHGADDAVGTVVSMLSGYAGRFS 262
           ECS      A  C  V ++HG  DA G   +     A  FS
Sbjct: 60  ECSYAYNQYAEACAPVLAQHGGGDAPGAAAAAFPASAASFS 100

>SHAN2_RAT (Q9QX74) SH3 and multiple ankyrin repeat domains protein 2 (Shank2)|
            (Proline-rich synapse-associated protein 1) (ProSAP1)
            (Cortactin-binding protein 1) (CortBP1)
            (GKAP/SAPAP-interacting protein) (SPANK-3)
          Length = 1474

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 140  ECSELPEPAAAPCRTVSSRHGADDAV 217
            + S  PEPAAAP RT+ +    ++AV
Sbjct: 985  QISAAPEPAAAPGRTIVAAGSVEEAV 1010


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,270,524
Number of Sequences: 219361
Number of extensions: 357501
Number of successful extensions: 1310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)