ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl02h08 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 254 bits (649), Expect = 8e-68 Identities = 119/130 (91%), Positives = 125/130 (96%) Frame = +3 Query: 81 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260 MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 440 RIAT+ELFRPH EAQDFLFIATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 441 GIIDPDCRLI 470 GIIDPDCRLI Sbjct: 121 GIIDPDCRLI 130
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 249 bits (637), Expect = 2e-66 Identities = 115/130 (88%), Positives = 123/130 (94%) Frame = +3 Query: 81 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 440 RIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQI 120 Query: 441 GIIDPDCRLI 470 GIIDPDCRLI Sbjct: 121 GIIDPDCRLI 130
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 243 bits (621), Expect = 1e-64 Identities = 115/135 (85%), Positives = 123/135 (91%), Gaps = 5/135 (3%) Frame = +3 Query: 81 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQ-----PMLD 245 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQ PMLD Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60 Query: 246 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPT 425 VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPT Sbjct: 61 VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120 Query: 426 DNGQIGIIDPDCRLI 470 DNGQIGIIDPDCRLI Sbjct: 121 DNGQIGIIDPDCRLI 135
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 234 bits (597), Expect = 8e-62 Identities = 109/130 (83%), Positives = 119/130 (91%) Frame = +3 Query: 81 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260 MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60 Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 440 RIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 441 GIIDPDCRLI 470 GIIDPDCR+I Sbjct: 121 GIIDPDCRVI 130
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 144 bits (362), Expect = 1e-34 Identities = 66/130 (50%), Positives = 99/130 (76%), Gaps = 2/130 (1%) Frame = +3 Query: 87 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 266 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 267 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 440 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 441 GIIDPDCRLI 470 GIIDP+CR+I Sbjct: 122 GIIDPECRMI 131
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 141 bits (356), Expect = 7e-34 Identities = 65/130 (50%), Positives = 98/130 (75%), Gaps = 2/130 (1%) Frame = +3 Query: 87 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 266 ++NYVVTA KPT+V+ +FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 267 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 440 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 441 GIIDPDCRLI 470 GIIDP+CR+I Sbjct: 122 GIIDPECRMI 131
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 63.5 bits (153), Expect = 3e-10 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 1/126 (0%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 275 YV HKP+S+ ++ F N+IVAK +E++ L + I+ +I + Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62 Query: 276 ELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTR-SMGDVSDRIGRPTDNGQIGIID 452 + F+P + D + +AT+ +++ L WDA + + + D S+R R + +G + ++D Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLVD 122 Query: 453 PDCRLI 470 P R+I Sbjct: 123 PFQRVI 128
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69 Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356 T+ FR ++D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSSKDYIIIGSDSGRITIIEY 98
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69 Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356 T+ FR +D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSNKDYIIIGSDSGRITIIEY 98
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 263 Y +T SV+ + VG F+G Q +IVAK +R+E LL P +D + +G Sbjct: 7 YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64 Query: 264 IATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSEL 377 I ++ FR ++D++ + ++ + +L++ + + L Sbjct: 65 IRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSL 102
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269 Y ++ P++++ + +G F+G + ++ A +R+ ++ P QG + P++ ++G I Sbjct: 10 YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69 Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356 + FR ++D+L IA++ + ++++ Sbjct: 70 DLASFRLAGSSKDYLIIASDSGRITIVEY 98
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +3 Query: 96 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269 Y +T PT+V+ + +G F+G + ++ A +R+ + P QG + +L I+G + Sbjct: 10 YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69 Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356 I FR +D++ +AT+ + ++++ Sbjct: 70 AIASFRLAGSHKDYIILATDSGRITIIEY 98
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 35.0 bits (79), Expect = 0.097 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Frame = +3 Query: 102 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 272 +T PT+VS + VG+F+G Q L V T++EI L T L ++ +G I Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65 Query: 273 IELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGII 449 I FR +D++ ++ + +L++ + +V + G R GQ + Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHFESLYQEVFGKSGSRRIVPGQFLAV 125 Query: 450 DPDCR 464 DP R Sbjct: 126 DPKGR 130
>RIK1_SCHPO (Q10426) Silencing protein rik1| Length = 1040 Score = 35.0 bits (79), Expect = 0.097 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 174 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVL 350 L++ + +I I+L + GLQ +P++ + I +RP +D+LF+ + + Sbjct: 28 LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87 Query: 351 QWDAEKSELL 380 WD + +++ Sbjct: 88 YWDEDYQKVI 97
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 32.3 bits (72), Expect = 0.63 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +1 Query: 244 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAAL 423 T Y + +SSS+LT SSSL TSS+S + + N + S P L +S+A Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSA- 114 Query: 424 RTMDRLGSSTLT 459 T L SS+ T Sbjct: 115 -TSSSLASSSTT 125
>FCMD_HUMAN (O75072) Fukutin (EC 2.-.-.-) (Fukuyama-type congenital muscular| dystrophy protein) Length = 461 Score = 32.0 bits (71), Expect = 0.82 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -1 Query: 452 VDDPNLSIVRRAADAIRNISHGSSEKL*FFCVP 354 +D L ++ + + ++N SHGS+ + FFCVP Sbjct: 75 IDPLILELINKNFEQVKNTSHGSTSQCKFFCVP 107
>YR648_MIMIV (Q5UR09) Hypothetical protein R648| Length = 400 Score = 31.6 bits (70), Expect = 1.1 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Frame = +3 Query: 93 NYVVTAHKPTSVSHSCVGNFTGPH----QLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260 N + PT ++ +C GNF + + L + +H PQ + P++ + Sbjct: 135 NIAQNSSYPTGIAINCTGNFATTNGTLTKSGLFLTCSEHGTVHSYNPQ-VDPLVSFLVLN 193 Query: 261 RIAT--IELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM--GDVSDRIGRPTD 428 T I +FR A D L++A + ++ ++ +D+ + LL GD SD I P Sbjct: 194 EQLTGEIHVFRGLAVAGDVLYLA-DFFQSKIMVFDSNYNRLLGFPFVDGDTSDPI--PIS 250 Query: 429 NGQIGIIDPDCRL 467 G I++ C L Sbjct: 251 YGPTNIVNIGCYL 263
>GPDA_TROW8 (Q83I37) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 325 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -1 Query: 449 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 294 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 148 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 199
>GPDA_TROWT (Q83G27) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 339 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -1 Query: 449 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 294 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 162 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 213
>MSA2_PLAFJ (P50499) Merozoite surface antigen 2 precursor (MSA-2)| Length = 264 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +1 Query: 262 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 441 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 442 GSST 453 +ST Sbjct: 107 STST 110
>MSA2_PLAFF (P19599) Merozoite surface antigen 2 precursor (MSA-2) (Merozoite| 45 kDa surface antigen) (AG513) Length = 264 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +1 Query: 262 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 441 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 442 GSST 453 +ST Sbjct: 107 STST 110
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -1 Query: 350 QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEALRRE 213 Q+ E +PLR N+ L ++ +RR PP GH ++ ++ALR + Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQ 2078
>Y066_METJA (Q60377) Hypothetical protein MJ0066| Length = 480 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 455 RVDDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLIVRAEE- 279 RV L++V +++ I+N+ G K+ FF +D + + N EE L+VRA E Sbjct: 177 RVVGVGLAVV--SSEDIKNMEKGKVVKVRFFIKDNEDYKPGKIYDNLEEAFDLMVRANEG 234 Query: 278 -LDRRDPPIYGHVQHRLEALRR 216 +D + G +++ E +++ Sbjct: 235 VIDNYERNAIGFIKNTYEKIKK 256
>SNX41_SCHPO (O60107) Sorting nexin-41| Length = 586 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1 Query: 250 PYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSF 378 P+ G RS+SSA+ + P+ S + +S + +Q N+SF Sbjct: 9 PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESF 51
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 247 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 247 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 247 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 29.3 bits (64), Expect = 5.3 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 24/142 (16%) Frame = +3 Query: 111 HKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-------QGLQP----------- 236 H T+V S F NL+VA ++++ + P Q L P Sbjct: 9 HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRL 68 Query: 237 --MLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDR 410 + +YG + +++ +D L I+ + K VLQ D + L T S+ + Sbjct: 69 ECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEED 128 Query: 411 IGRPTDNGQIGI----IDPDCR 464 R G+ + +DPD R Sbjct: 129 DIRGGWTGRYFVPTVRVDPDSR 150
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -1 Query: 359 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 231 +PL A VP G EE ++V + R PP+ GH + +L Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796
>CLPB_CHLPN (Q7AJA9) Chaperone clpB| Length = 866 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -1 Query: 335 VPLRGNEEEVLGLIVRAEELDRRDPPIYGH----VQHRLEALRREEVDLDAG 192 +P+ E E+ LIV+ E + R P Y +Q ++ALR E L G Sbjct: 409 LPIDEKERELAALIVKQEAIKREQSPSYQEEADAMQKSIDALREELASLRLG 460
>KCC4_YEAST (P25389) Probable serine/threonine-protein kinase KCC4 (EC| 2.7.11.1) Length = 1037 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +1 Query: 265 SRRSSSSALTMRPRTSSSLPRRGTS---SASCSGTQKNQSFSL 384 S SSSS+L + R+ S PRR TS S S ++K SF L Sbjct: 389 STLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLL 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.125 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,068,422 Number of Sequences: 219361 Number of extensions: 1035594 Number of successful extensions: 4148 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4063 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits)
