ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473186.1| Oryza sativa (japonica cultivar-group), predic... 295 6e-77
2emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 220 3e-54
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
4ref|XM_466826.1| Oryza sativa (japonica cultivar-group), mRNA 180 2e-42
5dbj|AK120845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 2e-42
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
7dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8gb|BT013608.1| Lycopersicon esculentum clone 132378R, mRNA sequence 56 1e-04
9gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.5
10gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.5
11emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
12gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.5
13gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.5
14gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 5.7
15ref|XM_744826.1| Aspergillus fumigatus Af293 cytochrome P450 alk... 40 5.7
16emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 5.7
17emb|AJ001206.2|TSO001206 Streptomyces coelicolor A3(2), glycogen... 40 5.7
18gb|AE009618.1| Brucella melitensis 16M chromosome I, section 175... 40 5.7
19gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 5.7
20gb|AE005170.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 3... 40 5.7
21gb|AE005144.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 5... 40 5.7
22gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.7
23emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 5.7
24gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete... 40 5.7 
>ref|XM_473186.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1407

 Score =  295 bits (149), Expect = 6e-77
 Identities = 214/236 (90%)
 Strand = Plus / Plus

                                                                       
Query: 189 acggaggaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtc 248
           ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 94  acggaggaggcctacgtcacgctgctgtacggggacgagttcgtcctcggcgtgcgcgtc 153

                                                                       
Query: 249 ctgggcaagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgac 308
           ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct: 154 ctgggcaagtccatccgcgacacgggcacgcgccgggacctggtcgtgctcgtctccgac 213

                                                                       
Query: 309 ggcgtctccgagtactcgcggnggctcctcgaggctgatggttggatcgtgaatcgtata 368
           ||||||||||| |||||||||  ||||||| |||| ||||||||||| |||| || ||||
Sbjct: 214 ggcgtctccgactactcgcggaagctcctccaggcagatggttggattgtgagtcatata 273

                                                                   
Query: 369 actttactggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacac 424
           || |||||||| |||||||| |||||||| |||| ||| |||||||| ||||||||
Sbjct: 274 acgttactggccaatcctaatcaagtgaggccaaagagattttggggcgtctacac 329
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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score =  220 bits (111), Expect = 3e-54
 Identities = 140/150 (93%)
 Strand = Plus / Plus

                                                                         
Query: 189   acggaggaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtc 248
             ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 51304 acggaggaggcctacgtcacgctgctgtacggggacgagttcgtcctcggcgtgcgcgtc 51363

                                                                         
Query: 249   ctgggcaagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgac 308
             ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct: 51364 ctgggcaagtccatccgcgacacgggcacgcgccgggacctggtcgtgctcgtctccgac 51423

                                           
Query: 309   ggcgtctccgagtactcgcggnggctcctc 338
             ||||||||||| |||||||||  |||||||
Sbjct: 51424 ggcgtctccgactactcgcggaagctcctc 51453



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                         
Query: 340   aggctgatggttggatcgtgaatcgtataactttactggctaatcctaaccaagtgagac 399
             |||| ||||||||||| |||| || |||||| |||||||| |||||||| |||||||| |
Sbjct: 51820 aggcagatggttggattgtgagtcatataacgttactggccaatcctaatcaagtgaggc 51879

                                      
Query: 400   caacgaggttttggggtgtctacac 424
             ||| ||| |||||||| ||||||||
Sbjct: 51880 caaagagattttggggcgtctacac 51904
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  220 bits (111), Expect = 3e-54
 Identities = 140/150 (93%)
 Strand = Plus / Plus

                                                                            
Query: 189      acggaggaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtc 248
                ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 25833894 acggaggaggcctacgtcacgctgctgtacggggacgagttcgtcctcggcgtgcgcgtc 25833953

                                                                            
Query: 249      ctgggcaagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgac 308
                ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct: 25833954 ctgggcaagtccatccgcgacacgggcacgcgccgggacctggtcgtgctcgtctccgac 25834013

                                              
Query: 309      ggcgtctccgagtactcgcggnggctcctc 338
                ||||||||||| |||||||||  |||||||
Sbjct: 25834014 ggcgtctccgactactcgcggaagctcctc 25834043



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                            
Query: 340      aggctgatggttggatcgtgaatcgtataactttactggctaatcctaaccaagtgagac 399
                |||| ||||||||||| |||| || |||||| |||||||| |||||||| |||||||| |
Sbjct: 25834410 aggcagatggttggattgtgagtcatataacgttactggccaatcctaatcaagtgaggc 25834469

                                         
Query: 400      caacgaggttttggggtgtctacac 424
                ||| ||| |||||||| ||||||||
Sbjct: 25834470 caaagagattttggggcgtctacac 25834494
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>ref|XM_466826.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score =  180 bits (91), Expect = 2e-42
 Identities = 195/230 (84%)
 Strand = Plus / Plus

                                                                       
Query: 195 gaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtcctgggc 254
           ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 260 gaggcgtacgtgacgctgctgtacggggacgagttcgtcctcggcgtgcgggtcctcggc 319

                                                                       
Query: 255 aagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgacggcgtc 314
           ||||||||||||||||| | |||  | |||||| | || ||||||||||||||||| || 
Sbjct: 320 aagtccatccgcgacacggacaccagccgcgacctcgtggtgctcgtctccgacggggtg 379

                                                                       
Query: 315 tccgagtactcgcggnggctcctcgaggctgatggttggatcgtgaatcgtataacttta 374
           |||||||||||||||  ||| ||||||||||| || |  || ||||| | |||||| || 
Sbjct: 380 tccgagtactcgcggaagctgctcgaggctgacgggtttatagtgaagcatataacattg 439

                                                             
Query: 375 ctggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacac 424
           |||||||||||||| || || || ||||| ||||||||||| || |||||
Sbjct: 440 ctggctaatcctaatcaggtaaggccaacaaggttttggggagtttacac 489
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>dbj|AK120845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M20, full
           insert sequence
          Length = 1908

 Score =  180 bits (91), Expect = 2e-42
 Identities = 195/230 (84%)
 Strand = Plus / Plus

                                                                       
Query: 195 gaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtcctgggc 254
           ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 261 gaggcgtacgtgacgctgctgtacggggacgagttcgtcctcggcgtgcgggtcctcggc 320

                                                                       
Query: 255 aagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgacggcgtc 314
           ||||||||||||||||| | |||  | |||||| | || ||||||||||||||||| || 
Sbjct: 321 aagtccatccgcgacacggacaccagccgcgacctcgtggtgctcgtctccgacggggtg 380

                                                                       
Query: 315 tccgagtactcgcggnggctcctcgaggctgatggttggatcgtgaatcgtataacttta 374
           |||||||||||||||  ||| ||||||||||| || |  || ||||| | |||||| || 
Sbjct: 381 tccgagtactcgcggaagctgctcgaggctgacgggtttatagtgaagcatataacattg 440

                                                             
Query: 375 ctggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacac 424
           |||||||||||||| || || || ||||| ||||||||||| || |||||
Sbjct: 441 ctggctaatcctaatcaggtaaggccaacaaggttttggggagtttacac 490
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 1e-31
 Identities = 129/148 (87%)
 Strand = Plus / Plus

                                                                            
Query: 195      gaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtcctgggc 254
                ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 24918274 gaggcgtacgtgacgctgctgtacggggacgagttcgtcctcggcgtgcgggtcctcggc 24918333

                                                                            
Query: 255      aagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgacggcgtc 314
                ||||||||||||||||| | |||  | |||||| | || ||||||||||||||||| || 
Sbjct: 24918334 aagtccatccgcgacacggacaccagccgcgacctcgtggtgctcgtctccgacggggtg 24918393

                                            
Query: 315      tccgagtactcgcggnggctcctcgagg 342
                |||||||||||||||  ||| |||||||
Sbjct: 24918394 tccgagtactcgcggaagctgctcgagg 24918421



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 365      tataactttactggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacac 424
                |||||| || |||||||||||||| || || || ||||| ||||||||||| || |||||
Sbjct: 24919383 tataacattgctggctaatcctaatcaggtaaggccaacaaggttttggggagtttacac 24919442
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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1215B07
          Length = 165957

 Score =  145 bits (73), Expect = 1e-31
 Identities = 129/148 (87%)
 Strand = Plus / Plus

                                                                         
Query: 195   gaggcatacgtcacgctgctctacggcgacgagttcgtcctcggcgtgcgcgtcctgggc 254
             ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 79557 gaggcgtacgtgacgctgctgtacggggacgagttcgtcctcggcgtgcgggtcctcggc 79616

                                                                         
Query: 255   aagtccatccgcgacaccggcacgcggcgcgacatggtcgtgctcgtctccgacggcgtc 314
             ||||||||||||||||| | |||  | |||||| | || ||||||||||||||||| || 
Sbjct: 79617 aagtccatccgcgacacggacaccagccgcgacctcgtggtgctcgtctccgacggggtg 79676

                                         
Query: 315   tccgagtactcgcggnggctcctcgagg 342
             |||||||||||||||  ||| |||||||
Sbjct: 79677 tccgagtactcgcggaagctgctcgagg 79704



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 365   tataactttactggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacac 424
             |||||| || |||||||||||||| || || || ||||| ||||||||||| || |||||
Sbjct: 80666 tataacattgctggctaatcctaatcaggtaaggccaacaaggttttggggagtttacac 80725
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>gb|BT013608.1| Lycopersicon esculentum clone 132378R, mRNA sequence
          Length = 2103

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 372 ttactggctaatcctaaccaagtgagaccaacgaggttttggggtgtctacacaaa 427
           |||||||| || || || ||||||||||| | |||||||||||| |||||||||||
Sbjct: 423 ttactggcaaacccaaatcaagtgagaccgaagaggttttggggcgtctacacaaa 478
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 82      cgcgggccgaaggcgaggccc 102
               |||||||||||||||||||||
Sbjct: 1190283 cgcgggccgaaggcgaggccc 1190263
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 268    acaccggcacgcggcgcgaca 288
              |||||||||||||||||||||
Sbjct: 190425 acaccggcacgcggcgcgaca 190405
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 82      cgcgggccgaaggcgaggccc 102
               |||||||||||||||||||||
Sbjct: 2506213 cgcgggccgaaggcgaggccc 2506193
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     cgcgggccgaaggcgaggccc 102
              |||||||||||||||||||||
Sbjct: 256692 cgcgggccgaaggcgaggccc 256712
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 224     cgagttcgtcctcggcgtgcgcgtc 248
               |||||||| ||||||||||||||||
Sbjct: 2573625 cgagttcgccctcggcgtgcgcgtc 2573601
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    caccggcacgcggcgcgaca 288
              ||||||||||||||||||||
Sbjct: 104219 caccggcacgcggcgcgaca 104238
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>ref|XM_744826.1| Aspergillus fumigatus Af293 cytochrome P450 alkane hydroxylase
           (Afu1g01690) partial mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tcgtcctcggcgtgcgcgtc 248
           ||||||||||||||||||||
Sbjct: 656 tcgtcctcggcgtgcgcgtc 637
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 208   cgctgctctacggcgacgagttcgtcct 235
             ||||| ||||||||||||||||| ||||
Sbjct: 84185 cgctgatctacggcgacgagttcatcct 84158
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>emb|AJ001206.2|TSO001206 Streptomyces coelicolor A3(2), glycogen metabolism cluster II
          Length = 9184

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 208  cgctgctctacggcgacgagttcgtcct 235
            ||||| ||||||||||||||||| ||||
Sbjct: 8027 cgctgatctacggcgacgagttcatcct 8054
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>gb|AE009618.1| Brucella melitensis 16M chromosome I, section 175 of 195 of the
            complete sequence
          Length = 11869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  caccggcacgcggcgcgaca 288
            ||||||||||||||||||||
Sbjct: 7660 caccggcacgcggcgcgaca 7641
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    caccggcacgcggcgcgaca 288
              ||||||||||||||||||||
Sbjct: 105578 caccggcacgcggcgcgaca 105597
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>gb|AE005170.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 31 of 32 of the
            complete genome
          Length = 12787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  cgtgctcgtctccgacggcg 312
            ||||||||||||||||||||
Sbjct: 8063 cgtgctcgtctccgacggcg 8044
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>gb|AE005144.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 5 of 32 of the
            complete genome
          Length = 10846

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cgtgctcgtctccgacggcg 312
            ||||||||||||||||||||
Sbjct: 5730 cgtgctcgtctccgacggcg 5749
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 292     tcgtgctcgtctccgacggc 311
               ||||||||||||||||||||
Sbjct: 1753634 tcgtgctcgtctccgacggc 1753615
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    caccggcacgcggcgcgaca 288
              ||||||||||||||||||||
Sbjct: 101946 caccggcacgcggcgcgaca 101965
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>gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence
          Length = 191346

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    cgtgctcgtctccgacggcg 312
              ||||||||||||||||||||
Sbjct: 172937 cgtgctcgtctccgacggcg 172918



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   cgtgctcgtctccgacggcg 312
             ||||||||||||||||||||
Sbjct: 50452 cgtgctcgtctccgacggcg 50471


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,757,292
Number of Sequences: 3902068
Number of extensions: 1757292
Number of successful extensions: 31923
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31447
Number of HSP's gapped (non-prelim): 476
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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