ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precu... 29 5.1
2SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 29 5.1
3SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 28 8.7

>NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)]
          Length = 868

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -1

Query: 440 RMSGRTSHGSMVATRRDHRCTAHSIHIIRP-----PPPKPSAGARSPA 312
           R S R+S GS   T       ++S  I RP     P P+P    RSPA
Sbjct: 46  RSSSRSSRGSTTTTSSSENSGSNSGSIFRPAAPPEPRPQPQPQPRSPA 93



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>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150)
            (Fragment)
          Length = 1324

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 413  SMVATRRDHRCTAHSIHIIRPPPPKPSAGARSPAP 309
            ++ AT+   + ++ ++   RPPPP+P A    PAP
Sbjct: 1088 TLPATQLQQKDSSQTLEPKRPPPPRPVAPPARPAP 1122



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>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -1

Query: 356  RPPPPKPSAGARSPAPT 306
            RPPPP   +GARSPAPT
Sbjct: 1125 RPPPP---SGARSPAPT 1138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,138,687
Number of Sequences: 219361
Number of extensions: 596960
Number of successful extensions: 3681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3631
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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