ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9) 28 5.7
2EPOR_MOUSE (P14753) Erythropoietin receptor precursor (EPO-R) 28 7.4
3TLR11_MOUSE (Q6R5P0) Toll-like receptor 11 precursor 28 7.4
4GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; C... 27 9.7

>MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9)|
          Length = 567

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 190 VVGQVVERFRARLREEAGEEPKAAAVVGVYKEALAELTFNC 312
           V G+VVE   AR+  E G+E       G+YKEA    T  C
Sbjct: 501 VFGRVVEEEMARIEREVGKEKFKK---GMYKEACKIFTRQC 538



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>EPOR_MOUSE (P14753) Erythropoietin receptor precursor (EPO-R)|
          Length = 507

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 64  PAWPCFASACLLLVASLPNPSPRRPFPE 147
           P WP     CLLL  +   PSP  P P+
Sbjct: 7   PLWPRVGPLCLLLAGAAWAPSPSLPDPK 34



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>TLR11_MOUSE (Q6R5P0) Toll-like receptor 11 precursor|
          Length = 926

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 19/45 (42%), Positives = 20/45 (44%)
 Frame = +1

Query: 25  SCSCKSQINPNTFPAWPCFASACLLLVASLPNPSPRRPFPETLDL 159
           SC  K Q     FP         LL  +S PN  P  PF ETLDL
Sbjct: 187 SCLTKFQDLQRLFPD-------LLLSTSSTPNIKPGAPFLETLDL 224



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>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 49  NPNTFPAWPCFASACLLLVASLPNPSPRRPFPETLDLPMXXXXXXXPVVGQVVERF 216
           N NTFP+ P F  A    V +  +P P  P P     P+         +G+VV  F
Sbjct: 197 NNNTFPSAPPFPPAYTPTVMAGLDPPPGFPPPSKHMSPLQKALRQAQRLGEVVSDF 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,318,563
Number of Sequences: 219361
Number of extensions: 437957
Number of successful extensions: 1121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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