ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480436.1| Oryza sativa (japonica cultivar-group), mRNA 70 5e-09
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
3dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
4dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
6dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
7dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
8gb|DQ226858.1| Boechera divaricarpa isolate SLW-C-E05 mRNA sequence 46 0.071
9dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.071
10ref|XM_677215.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.28
11ref|XM_466261.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
12gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 42 1.1
13emb|BX067988.1|CNS09OMG Single read from an extremity of a full-... 42 1.1
14emb|BX067987.1|CNS09OMF Single read from an extremity of a full-... 42 1.1
15emb|BX049757.1|CNS09AK1 Single read from an extremity of a full-... 42 1.1
16emb|BX049756.1|CNS09AK0 Single read from an extremity of a full-... 42 1.1
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
22ref|XM_566427.1| Anopheles gambiae str. PEST ENSANGP00000016923 ... 42 1.1
23dbj|AK069227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
24dbj|AK063099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
25emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in... 42 1.1
26emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in... 42 1.1
27dbj|D38214.1|STMCTS Streptomyces aureofaciens cts4, cts6 and cts... 42 1.1
28gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.4
29gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.4
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.4
31gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cance... 40 4.4
32gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Can... 40 4.4
33emb|CR688180.2|CNS0FTY8 Tetraodon nigroviridis full-length cDNA 40 4.4
34emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.4
35emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 4.4
36emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 4.4
37emb|AJ543650.1|RSP543650 Rhodobacter sphaeroides smc gene 40 4.4
38gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.4
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
43gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, co... 40 4.4
44gb|AC007433.16|AC007433 Mus musculus chromosome 10, clone RP21-3... 40 4.4
45gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 4.4
46dbj|AB166747.1| Mus musculus Trpm2 mRNA for transient receptor p... 40 4.4
47gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 4.4
48gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.4
49dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.4
50dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 4.4
51dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
52dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
53dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
54dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
55emb|AJ322736.1|HSA322736 Homo sapiens genomic sequence surroundi... 40 4.4
56dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
57dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 4.4
58gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
59gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
60emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 40 4.4
61emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chro... 40 4.4
62dbj|D55717.1| Porcine rotavirus mRNA for RGD-containing collagen... 40 4.4 
>ref|XM_480436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3078

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 295 gagctcaccttcaactgcaagcccatcatcaccgagctc 333
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctc 341
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                      
Query: 295     gagctcaccttcaactgcaagcccatcatcaccgagctc 333
               |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5121478 gagctcacgttcaactgcaagcccatcatcaccgagctc 5121440
to top
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                    
Query: 295   gagctcaccttcaactgcaagcccatcatcaccgagctc 333
             |||||||| ||||||||||||||||||||||||||||||
Sbjct: 71242 gagctcacgttcaactgcaagcccatcatcaccgagctc 71204
to top
>dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full
           insert sequence
          Length = 3320

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 295 gagctcaccttcaactgcaagcccatcatcaccgagctc 333
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctc 341
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 286      gccctcgccgagctcaccttcaactgcaagcccatcatcacc 327
                |||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 22270861 gccctcggggagctcaccttcaactccaagcccatcatcacc 22270820
to top
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 286   gccctcgccgagctcaccttcaactgcaagcccatcatcacc 327
             |||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 90759 gccctcggggagctcaccttcaactccaagcccatcatcacc 90718
to top
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1155_H10
          Length = 140475

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 286   gccctcgccgagctcaccttcaactgcaagcccatcatcacc 327
             |||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 32869 gccctcggggagctcaccttcaactccaagcccatcatcacc 32828
to top
>gb|DQ226858.1| Boechera divaricarpa isolate SLW-C-E05 mRNA sequence
          Length = 243

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 166 tcctccgccgctgctgcagcccc 188
           |||||||||||||||||||||||
Sbjct: 102 tcctccgccgctgctgcagcccc 80
to top
>dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full
           insert sequence
          Length = 4175

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 301 accttcaactgcaagcccatcatcacc 327
           |||||||||| ||||||||||||||||
Sbjct: 445 accttcaactccaagcccatcatcacc 471
to top
>ref|XM_677215.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9038.2), mRNA
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 243  agaggagccgaaggcggccgcg 264
            ||||||||||||||||||||||
Sbjct: 1065 agaggagccgaaggcggccgcg 1086
to top
>ref|XM_466261.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 221 cgcggctgcgcgaggaggcgg 241
           |||||||||||||||||||||
Sbjct: 757 cgcggctgcgcgaggaggcgg 777
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 222    gcggctgcgcgaggaggcggg 242
              |||||||||||||||||||||
Sbjct: 286728 gcggctgcgcgaggaggcggg 286708
to top
>emb|BX067988.1|CNS09OMG Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 721

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 169 tccgccgctgctgcagcccca 189
           |||||||||||||||||||||
Sbjct: 661 tccgccgctgctgcagcccca 641
to top
>emb|BX067987.1|CNS09OMF Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tccgccgctgctgcagcccca 189
           |||||||||||||||||||||
Sbjct: 575 tccgccgctgctgcagcccca 595
to top
>emb|BX049757.1|CNS09AK1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 798

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 169 tccgccgctgctgcagcccca 189
           |||||||||||||||||||||
Sbjct: 660 tccgccgctgctgcagcccca 640
to top
>emb|BX049756.1|CNS09AK0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 955

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tccgccgctgctgcagcccca 189
           |||||||||||||||||||||
Sbjct: 602 tccgccgctgctgcagcccca 622
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 254      aggcggccgcggtggtgggcg 274
                |||||||||||||||||||||
Sbjct: 21493749 aggcggccgcggtggtgggcg 21493769



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 254      aggcggccgcggtggtgggc 273
                ||||||||||||||||||||
Sbjct: 20052876 aggcggccgcggtggtgggc 20052857
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 221      cgcggctgcgcgaggaggcgg 241
                |||||||||||||||||||||
Sbjct: 21332152 cgcggctgcgcgaggaggcgg 21332172
to top
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0567G03
          Length = 196834

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   aggcggccgcggtggtgggcg 274
             |||||||||||||||||||||
Sbjct: 50933 aggcggccgcggtggtgggcg 50953
to top
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0513E02
          Length = 141477

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    aggcggccgcggtggtgggcg 274
              |||||||||||||||||||||
Sbjct: 128249 aggcggccgcggtggtgggcg 128269
to top
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0435E12
          Length = 143188

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    cgcggctgcgcgaggaggcgg 241
              |||||||||||||||||||||
Sbjct: 114687 cgcggctgcgcgaggaggcgg 114707
to top
>ref|XM_566427.1| Anopheles gambiae str. PEST ENSANGP00000016923
           (ENSANGG00000014434), partial mRNA
          Length = 1155

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tccgccgctgctgcagcccca 189
           |||||||||||||||||||||
Sbjct: 392 tccgccgctgctgcagcccca 412
to top
>dbj|AK069227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C03, full
           insert sequence
          Length = 984

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 aggcggccgcggtggtgggcg 274
           |||||||||||||||||||||
Sbjct: 382 aggcggccgcggtggtgggcg 402
to top
>dbj|AK063099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C05, full
           insert sequence
          Length = 958

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 aggcggccgcggtggtgggcg 274
           |||||||||||||||||||||
Sbjct: 375 aggcggccgcggtggtgggcg 395
to top
>emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in linkage group 20,
              complete sequence
          Length = 146568

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    gaggagccgaaggcggccgcggtgg 268
              |||||||||||| ||||||||||||
Sbjct: 137261 gaggagccgaagccggccgcggtgg 137285
to top
>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
             complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 244   gaggagccgaaggcggccgcggtgg 268
             |||||||||||| ||||||||||||
Sbjct: 93392 gaggagccgaagccggccgcggtgg 93368
to top
>dbj|D38214.1|STMCTS Streptomyces aureofaciens cts4, cts6 and cts8 genes, complete cds
          Length = 4422

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 275  tctacaaggaggccctcgccgagctcacc 303
            |||||||||||||| ||| ||||||||||
Sbjct: 4013 tctacaaggaggccttcgacgagctcacc 4041
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    agccgaaggcggccgcggtg 267
              ||||||||||||||||||||
Sbjct: 350819 agccgaaggcggccgcggtg 350838
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     ccgcgcgcggctgcgcgagg 235
               ||||||||||||||||||||
Sbjct: 2624483 ccgcgcgcggctgcgcgagg 2624464



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     tccgcgcgcggctgcgcgag 234
               ||||||||||||||||||||
Sbjct: 1219991 tccgcgcgcggctgcgcgag 1220010
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 230      gcgaggaggcgggagaggagccgaaggcggccgcgg 265
                |||| ||||||||||||||| | |||||||| ||||
Sbjct: 34048201 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34048166
to top
>gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   tttcccagaaaccctagatctccc 161
             ||||||||||| ||||||||||||
Sbjct: 79412 tttcccagaaatcctagatctccc 79435
to top
>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 149929

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 138  tttcccagaaaccctagatctccc 161
            ||||||||||| ||||||||||||
Sbjct: 1702 tttcccagaaatcctagatctccc 1679
to top
>emb|CR688180.2|CNS0FTY8 Tetraodon nigroviridis full-length cDNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ccgccgctgctgcagcccca 189
            ||||||||||||||||||||
Sbjct: 1129 ccgccgctgctgcagcccca 1110
to top
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ggcggccgcggtggtgggcg 274
              ||||||||||||||||||||
Sbjct: 141142 ggcggccgcggtggtgggcg 141123
to top
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ggcggccgcggtggtgggcg 274
             ||||||||||||||||||||
Sbjct: 93823 ggcggccgcggtggtgggcg 93804
to top
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ggcggccgcggtggtgggcg 274
              ||||||||||||||||||||
Sbjct: 250048 ggcggccgcggtggtgggcg 250067
to top
>emb|AJ543650.1|RSP543650 Rhodobacter sphaeroides smc gene
          Length = 3456

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  ccgcgcgcggctgcgcgagg 235
            ||||||||||||||||||||
Sbjct: 2178 ccgcgcgcggctgcgcgagg 2197
to top
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0011A24, from chromosome 10, complete sequence
          Length = 176832

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    aaaccctagcccgcgccgcc 136
              ||||||||||||||||||||
Sbjct: 105198 aaaccctagcccgcgccgcc 105217
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    gcccgcgccgccctttccca 144
              ||||||||||||||||||||
Sbjct: 147827 gcccgcgccgccctttccca 147808
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     aaaccctagcccgcgccgcc 136
               ||||||||||||||||||||
Sbjct: 4799918 aaaccctagcccgcgccgcc 4799937
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 246      ggagccgaaggcggccgcgg 265
                ||||||||||||||||||||
Sbjct: 22134830 ggagccgaaggcggccgcgg 22134849
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 230      gcgaggaggcgggagaggagccgaaggcggccgcgg 265
                |||| ||||||||||||||| | |||||||| ||||
Sbjct: 34138673 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34138638
to top
>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence
          Length = 166871

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aatcccaaattaatcccaac 57
             ||||||||||||||||||||
Sbjct: 75336 aatcccaaattaatcccaac 75355
to top
>gb|AC007433.16|AC007433 Mus musculus chromosome 10, clone RP21-340M5, complete sequence
          Length = 125105

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 138    tttcccagaaaccctagatctccc 161
              ||||||||||| ||||||||||||
Sbjct: 123866 tttcccagaaatcctagatctccc 123843
to top
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 230   gcgaggaggcgggagaggagccgaaggcggccgcgg 265
             |||| ||||||||||||||| | |||||||| ||||
Sbjct: 12013 gcgacgaggcgggagaggaggcaaaggcggcggcgg 11978
to top
>dbj|AB166747.1| Mus musculus Trpm2 mRNA for transient receptor potential cation
            channel, subfamily M, member 2, complete cds
          Length = 6069

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 138  tttcccagaaaccctagatctccc 161
            ||||||||||| ||||||||||||
Sbjct: 5977 tttcccagaaatcctagatctccc 5954
to top
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence,
            complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 230  gcgaggaggcgggagaggagccgaaggcggccgcgg 265
            |||| ||||||||||||||| | |||||||| ||||
Sbjct: 9490 gcgacgaggcgggagaggaggcaaaggcggcggcgg 9525
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ggcggccgcggtggtgggcg 274
              ||||||||||||||||||||
Sbjct: 216228 ggcggccgcggtggtgggcg 216247
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     cgcgcggctgcgcgaggagg 238
               ||||||||||||||||||||
Sbjct: 5372546 cgcgcggctgcgcgaggagg 5372527
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    gccgcggtggtgggcgtctacaag 282
              |||||||||||||||||| |||||
Sbjct: 727256 gccgcggtggtgggcgtcgacaag 727233
to top
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1068H08
          Length = 152794

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   aggcggccgcggtggtgggc 273
             ||||||||||||||||||||
Sbjct: 41150 aggcggccgcggtggtgggc 41131
to top
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0058I18
          Length = 151453

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   ggagccgaaggcggccgcgg 265
             ||||||||||||||||||||
Sbjct: 88486 ggagccgaaggcggccgcgg 88505
to top
>dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D08, full
           insert sequence
          Length = 1630

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 ggagccgaaggcggccgcgg 265
           ||||||||||||||||||||
Sbjct: 657 ggagccgaaggcggccgcgg 638
to top
>dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A09, full
           insert sequence
          Length = 2576

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 gcccgcgccgccctttccca 144
           ||||||||||||||||||||
Sbjct: 278 gcccgcgccgccctttccca 297
to top
>emb|AJ322736.1|HSA322736 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OO2C
          Length = 735

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 244 gaggagccgaaggcggccgcggtg 267
           |||||||||||||||| |||||||
Sbjct: 176 gaggagccgaaggcgggcgcggtg 153
to top
>dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05, full
           insert sequence
          Length = 1690

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 aggcggccgcggtggtgggc 273
           ||||||||||||||||||||
Sbjct: 350 aggcggccgcggtggtgggc 331
to top
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cgcgcggctgcgcgaggagg 238
              ||||||||||||||||||||
Sbjct: 119278 cgcgcggctgcgcgaggagg 119259
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     aaaccctagcccgcgccgcc 136
               ||||||||||||||||||||
Sbjct: 4800739 aaaccctagcccgcgccgcc 4800758
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    gcccgcgccgccctttccca 144
              ||||||||||||||||||||
Sbjct: 147827 gcccgcgccgccctttccca 147808
to top
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    gcccgcgccgccctttccca 144
              ||||||||||||||||||||
Sbjct: 157166 gcccgcgccgccctttccca 157185
to top
>emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chromosome 2, complete
              sequence
          Length = 207100

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    gccctttcccagaaacccta 153
              ||||||||||||||||||||
Sbjct: 157442 gccctttcccagaaacccta 157461
to top
>dbj|D55717.1| Porcine rotavirus mRNA for RGD-containing collagen associated
            protein, complete cds
          Length = 2819

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 297  gctcaccttcaactgcaagcccatcatc 324
            ||||||| ||||| ||||||||||||||
Sbjct: 1199 gctcaccatcaacggcaagcccatcatc 1226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,353,038
Number of Sequences: 3902068
Number of extensions: 3353038
Number of successful extensions: 70619
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69212
Number of HSP's gapped (non-prelim): 1407
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top