ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
2dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
4gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 84 4e-13
5gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 84 4e-13
6ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa831... 46 0.094
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
9dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
10ref|XM_479592.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
11gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
12gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, comple... 42 1.5
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
17gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, compl... 42 1.5
18ref|XM_480820.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
19ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
20gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, co... 40 5.8
21gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.8
22gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.8
23gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL02... 40 5.8
24gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complet... 40 5.8
25gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 5.8
26emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.8
27emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.8
28dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
29ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA 40 5.8
30gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete... 40 5.8
31gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromos... 40 5.8
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33gb|AC007881.4| Homo sapiens BAC clone RP11-467P9 from 2, complet... 40 5.8
34dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
36gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:1036... 40 5.8
37dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds 40 5.8
41dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
42dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
43gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the ... 40 5.8
44dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
45dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
46dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.8
48gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.8 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 87       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27845868 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27845809

                                                                            
Query: 147      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27845808 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27845749

                  
Query: 207      gg 208
                ||
Sbjct: 27845748 gg 27845747



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                            
Query: 87       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27716358 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27716417

                                                                            
Query: 147      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
                  | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27716418 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27716477

                  
Query: 207      gg 208
                ||
Sbjct: 27716478 gg 27716479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 399      aaagattttgtcaaggagaattcgtggcctgaac 432
                ||||||||||||||||| |||| |||||||||||
Sbjct: 27844909 aaagattttgtcaaggaaaatttgtggcctgaac 27844876



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 399      aaagattttgtcaaggagaattcgtggcctgaac 432
                ||||||||||||||||| |||| |||||||||||
Sbjct: 27717426 aaagattttgtcaaggaaaatttgtggcctgaac 27717459



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 181      ccatcgccctcctcgccgtcgccgc 205
                |||||||||||||| ||||||||||
Sbjct: 22477385 ccatcgccctcctctccgtcgccgc 22477409
to top
>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full
           insert sequence
          Length = 3586

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Plus

                                                                       
Query: 87  ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
           |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 137 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 196

                                                                       
Query: 147 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
             | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 197 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 256

                                 
Query: 207 ggggatggtgatcaaggtacaa 228
           |  ||||| || ||||| ||||
Sbjct: 257 gctgatggggaccaaggaacaa 278



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 337 tgcttcgagtggaacctgcaattcttcgagtgctgattgaagtttttcgccaagttgcgg 396
           |||||| ||||||||||    ||||||||||  ||||||||||||| ||||||||    |
Sbjct: 387 tgcttcaagtggaacctttccttcttcgagtattgattgaagttttccgccaagtcatag 446

                                               
Query: 397 agaaagattttgtcaaggagaattcgtggcctgaac 432
           | ||||||||||||||||| |||| |||||||||||
Sbjct: 447 aaaaagattttgtcaaggaaaatttgtggcctgaac 482
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 87       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27869856 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27869797

                                                                            
Query: 147      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27869796 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27869737

                  
Query: 207      gg 208
                ||
Sbjct: 27869736 gg 27869735



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                            
Query: 87       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27740346 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27740405

                                                                            
Query: 147      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
                  | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27740406 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27740465

                  
Query: 207      gg 208
                ||
Sbjct: 27740466 gg 27740467



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 399      aaagattttgtcaaggagaattcgtggcctgaac 432
                ||||||||||||||||| |||| |||||||||||
Sbjct: 27868897 aaagattttgtcaaggaaaatttgtggcctgaac 27868864



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 399      aaagattttgtcaaggagaattcgtggcctgaac 432
                ||||||||||||||||| |||| |||||||||||
Sbjct: 27741414 aaagattttgtcaaggaaaatttgtggcctgaac 27741447



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 181      ccatcgccctcctcgccgtcgccgc 205
                |||||||||||||| ||||||||||
Sbjct: 22787296 ccatcgccctcctctccgtcgccgc 22787320
to top
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                        
Query: 87   ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
            |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 5615 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 5556

                                                                        
Query: 147  gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
              | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5555 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 5496

              
Query: 207  gg 208
            ||
Sbjct: 5495 gg 5494



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 399  aaagattttgtcaaggagaattcgtggcctgaac 432
            ||||||||||||||||| |||| |||||||||||
Sbjct: 4547 aaagattttgtcaaggaaaatttgtggcctgaac 4514
to top
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21
              map R3342S, complete sequence
          Length = 133790

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                          
Query: 87     ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 146
              |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 129314 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 129255

                                                                          
Query: 147    gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 206
                | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 129254 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 129195

                
Query: 207    gg 208
              ||
Sbjct: 129194 gg 129193



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 399    aaagattttgtcaaggagaattcgtggcctgaac 432
              ||||||||||||||||| |||| |||||||||||
Sbjct: 128246 aaagattttgtcaaggaaaatttgtggcctgaac 128213



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 399 aaagattttgtcaaggagaattcgtggcctgaac 432
           ||||||||||||||||| |||| |||||||||||
Sbjct: 763 aaagattttgtcaaggaaaatttgtggcctgaac 796
to top
>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA
          Length = 1713

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 80  ccggagcctcctcgccgccaccc 102
           |||||||||||||||||||||||
Sbjct: 675 ccggagcctcctcgccgccaccc 653
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 80      ccggagcctcctcgccgccaccc 102
               |||||||||||||||||||||||
Sbjct: 8347567 ccggagcctcctcgccgccaccc 8347545



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      tcgccctcctcgccgtcgcc 203
                ||||||||||||||||||||
Sbjct: 40214424 tcgccctcctcgccgtcgcc 40214443



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      tcgccctcctcgccgtcgcc 203
                ||||||||||||||||||||
Sbjct: 25593597 tcgccctcctcgccgtcgcc 25593578



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      tcgccctcctcgccgtcgcc 203
                ||||||||||||||||||||
Sbjct: 23461169 tcgccctcctcgccgtcgcc 23461150
to top
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 80     ccggagcctcctcgccgccaccc 102
              |||||||||||||||||||||||
Sbjct: 141498 ccggagcctcctcgccgccaccc 141476
to top
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 80    ccggagcctcctcgccgccaccc 102
             |||||||||||||||||||||||
Sbjct: 12193 ccggagcctcctcgccgccaccc 12171
to top
>ref|XM_479592.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 cgccctcctcgccgtcgccgc 205
           |||||||||||||||||||||
Sbjct: 51  cgccctcctcgccgtcgccgc 71
to top
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 181   ccatcgccctcctcgccgtcgccgc 205
             |||||||||||||| ||||||||||
Sbjct: 34530 ccatcgccctcctctccgtcgccgc 34554
to top
>gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, complete sequence
          Length = 155470

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 187   ccctcctcgccgtcgccgcagggga 211
             ||||||||||||||||||| |||||
Sbjct: 88414 ccctcctcgccgtcgccgcggggga 88390
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 185      cgccctcctcgccgtcgccgc 205
                |||||||||||||||||||||
Sbjct: 29099757 cgccctcctcgccgtcgccgc 29099737
to top
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   cgccctcctcgccgtcgccgc 205
             |||||||||||||||||||||
Sbjct: 34875 cgccctcctcgccgtcgccgc 34855
to top
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   cgccctcctcgccgtcgccgc 205
             |||||||||||||||||||||
Sbjct: 47714 cgccctcctcgccgtcgccgc 47694
to top
>dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full
           insert sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 cgccctcctcgccgtcgccgc 205
           |||||||||||||||||||||
Sbjct: 100 cgccctcctcgccgtcgccgc 120
to top
>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence
          Length = 177231

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 187   ccctcctcgccgtcgccgcagggga 211
             ||||||||||||||||||| |||||
Sbjct: 42712 ccctcctcgccgtcgccgccgggga 42688
to top
>ref|XM_480820.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 697

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 ccccatcgccctcctcgccg 198
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
to top
>ref|NM_192244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  tcgccctcctcgccgtcgcc 203
            ||||||||||||||||||||
Sbjct: 1343 tcgccctcctcgccgtcgcc 1324
to top
>gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, complete sequence
          Length = 215400

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gcaacatggaaggggggctc 287
             ||||||||||||||||||||
Sbjct: 21132 gcaacatggaaggggggctc 21151
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     gatctccgcggccggcgacc 171
               ||||||||||||||||||||
Sbjct: 1024066 gatctccgcggccggcgacc 1024085
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     gccgacaaaacgtccgtgga 127
               ||||||||||||||||||||
Sbjct: 2241288 gccgacaaaacgtccgtgga 2241269
to top
>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene
            region
          Length = 16710

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 184  tcgccctcctcgccgtcgcc 203
            ||||||||||||||||||||
Sbjct: 5172 tcgccctcctcgccgtcgcc 5191
to top
>gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complete sequence
          Length = 221622

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   gcaacatggaaggggggctc 287
             ||||||||||||||||||||
Sbjct: 53539 gcaacatggaaggggggctc 53520
to top
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 394    cggagaaagattttgtcaaggaga 417
              ||||||||||| ||||||||||||
Sbjct: 898460 cggagaaagatattgtcaaggaga 898483
to top
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    gatctccgcggccggcgacc 171
              ||||||||||||||||||||
Sbjct: 339780 gatctccgcggccggcgacc 339799
to top
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   gatctccgcggccggcgacc 171
             ||||||||||||||||||||
Sbjct: 37519 gatctccgcggccggcgacc 37538
to top
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tcgccctcctcgccgtcgcc 203
             ||||||||||||||||||||
Sbjct: 13376 tcgccctcctcgccgtcgcc 13395
to top
>ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   cctcctcgccgccaccctca 105
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
to top
>gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete genome
          Length = 37074

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   gtcgccgcaggggatggtgatcaa 221
             |||||||| |||||||||||||||
Sbjct: 11201 gtcgccgctggggatggtgatcaa 11224
to top
>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete
              sequence
          Length = 216348

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cagcttgctcaggctctgct 340
              ||||||||||||||||||||
Sbjct: 143379 cagcttgctcaggctctgct 143360
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     ccccatcgccctcctcgccg 198
               ||||||||||||||||||||
Sbjct: 7966622 ccccatcgccctcctcgccg 7966603
to top
>gb|AC007881.4| Homo sapiens BAC clone RP11-467P9 from 2, complete sequence
          Length = 171247

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    ctcaggctctgcttcgagtggaac 351
              ||||||||||||||| ||||||||
Sbjct: 136498 ctcaggctctgcttctagtggaac 136521
to top
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tcgccctcctcgccgtcgcc 203
             ||||||||||||||||||||
Sbjct: 80202 tcgccctcctcgccgtcgcc 80221
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      tcgccgccaccctcagcgcc 110
               ||||||||||||||||||||
Sbjct: 5832567 tcgccgccaccctcagcgcc 5832586
to top
>gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:103673 IMAGE:7256976),
            complete cds
          Length = 3274

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   cctcctcgccgccaccctca 105
            ||||||||||||||||||||
Sbjct: 2193 cctcctcgccgccaccctca 2174
to top
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ccccatcgccctcctcgccg 198
             ||||||||||||||||||||
Sbjct: 38792 ccccatcgccctcctcgccg 38773
to top
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tcgccctcctcgccgtcgcc 203
             ||||||||||||||||||||
Sbjct: 40403 tcgccctcctcgccgtcgcc 40384
to top
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tcgccctcctcgccgtcgcc 203
              ||||||||||||||||||||
Sbjct: 121200 tcgccctcctcgccgtcgcc 121181
to top
>dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   cctcctcgccgccaccctca 105
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
to top
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tcgccctcctcgccgtcgcc 203
             ||||||||||||||||||||
Sbjct: 24474 tcgccctcctcgccgtcgcc 24455
to top
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1425D05, complete sequence
          Length = 66450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 184  tcgccctcctcgccgtcgcc 203
            ||||||||||||||||||||
Sbjct: 5774 tcgccctcctcgccgtcgcc 5793
to top
>gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the complete genome
          Length = 16488

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  tctccgcggccggcgacccc 173
            ||||||||||||||||||||
Sbjct: 7611 tctccgcggccggcgacccc 7630
to top
>dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A06, full
           insert sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 ccccatcgccctcctcgccg 198
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
to top
>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  tcgccctcctcgccgtcgcc 203
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
to top
>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  tcgccctcctcgccgtcgcc 203
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     cagcttgctcaggctctgct 340
               ||||||||||||||||||||
Sbjct: 5708487 cagcttgctcaggctctgct 5708468
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cctcctcgccgccaccctca 105
               ||||||||||||||||||||
Sbjct: 1751706 cctcctcgccgccaccctca 1751725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,842,027
Number of Sequences: 3902068
Number of extensions: 2842027
Number of successful extensions: 61450
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60477
Number of HSP's gapped (non-prelim): 969
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top