>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 184 ALQPWQPSPSTSQRG---VPLLLRARRKPSRGAKSPS 83
           A+ PW+PSPS ++     VP+L  +  KPS    SPS
Sbjct: 75  AIAPWEPSPSPTETAWTVVPVLKSSALKPSTVQFSPS 111

>GALT3_CAEEL (P34678) Polypeptide N-acetylgalactosaminyltransferase 3 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           3) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 3) (pp-GaNTase 3)
           (GalNAc-T1)
          Length = 612

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -1

Query: 375 PITVIVSINLLGCQTASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGG 199
           PI  ++S +     TAS +TW       +F W  V + +    G DR   +    +AGG
Sbjct: 290 PIIDVISDDTFEYVTASETTWGGFNWHLNFRWYAVPKRELNRRGSDRSMPIQTPTIAGG 348

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 187  RALLAARYSPRGELAAAILSPARRVDSPHSLPAERGCP 300
            R ++    SP GE A +I +P     +P SLPA   CP
Sbjct: 1053 REVVVRTMSPHGESADSIPAPITPALAPASLPARVSCP 1090

>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 261 DAPGGGEDRGRELAARGVAGGE---EGPARSNHGSHLPQ 154
           +A GGG DRG E  ARG  G     E    +  G+ +PQ
Sbjct: 59  EAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQ 97

>OPN4_HUMAN (Q9UHM6) Melanopsin (Opsin-4)|
          Length = 478

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
 Frame = +2

Query: 263 IRRTVFQLKEDARVFWFHVEALAVWHPSKL----------METITVIGGCKTQGATEESP 412
           IRR    L  ++ V W H+EA AVW  ++           +E +      + QG   E+P
Sbjct: 405 IRRRQESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETP 464

Query: 413 AQNTRLIISVAP 448
            +   LI S  P
Sbjct: 465 GKTKGLIPSQDP 476

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -3

Query: 175 PWQPSPSTSQRGVPLLLR----ARRKPSRGAKSPSRQ 77
           P QPSP+T+   V   L+    A RKP R + SP  Q
Sbjct: 140 PQQPSPATTPSAVQFFLQEDEGAERKPERTSPSPPTQ 176

>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 232 AAILSPARRVDSPHSLPAERGCPRFLVPRRGAGSLASE 345
           AA++S  RR   P + P ERG P   VP R A +  S+
Sbjct: 96  AAVVSLLRRFSLPPTAPGERGTP--AVPARAAAARCSQ 131

>PAP2_ORYSA (Q6K439) Probable plastid-lipid-associated protein 2, chloroplast|
           precursor (Fibrillin-like protein 2)
          Length = 319

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 292 GCPRFLVPRRGAGSLASEQIDGDYHRDWGVQNAGSYGG 405
           G PRF   R     L +  + GD   +WG + A   GG
Sbjct: 37  GAPRFPTLRAAPRRLTARAVAGDAEDEWGKEPAADQGG 74

>RS4_LACAC (Q5FKX2) 30S ribosomal protein S4|
          Length = 203

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 303 TRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLPQPL 148
           +R +  SWK  RR+     G   G+ELA R  A G+ GP      S   Q L
Sbjct: 2   SRYTGPSWKRSRRLGISLSGT--GKELARRNYAPGQHGPNSRGRLSEYGQQL 51

>IKBB_MOUSE (Q60778) NF-kappa-B inhibitor beta (NF-kappa-BIB) (I-kappa-B-beta)|
           (IkappaBbeta) (IKB-beta) (IKB-B)
          Length = 359

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +1

Query: 199 AARYSPRGELAAAILSP---ARRVDSPHSLPAERGCPRFLVP--RRGAGSLASEQIDGDY 363
           A  Y  R  L +A+L P     R+   H  P        L P    G+ S +  + +GD 
Sbjct: 269 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDEDDKLSPCSSSGSDSDSDNRDEGDE 328

Query: 364 HRDWGVQNAGSYGGESRSKHSPDHFSRPLQRDPHSA 471
           + D  V     + G S+++  P   S+PL  DP+ A
Sbjct: 329 YDDIVV-----HSGRSQNRQPPSPASKPLPDDPNPA 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,845,780
Number of Sequences: 219361
Number of extensions: 1242848
Number of successful extensions: 4127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4123
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)