ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl02f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102N10, full insert sequence Length = 3167 Score = 240 bits (121), Expect = 4e-60 Identities = 269/315 (85%), Gaps = 5/315 (1%) Strand = Plus / Plus Query: 172 cgacggcgacgcccaaggcggtgatccaccagcggtacggcgccaaggccgtctacaagg 231 |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct: 249 cgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcg 308 Query: 232 tggacgaggtgcgggaggacgctgacggcgtctgccccggcctcgcgctgccgcagaaca 291 |||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| | | Sbjct: 309 tggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcaga 368 Query: 292 ccaggtgcgtctaccgatgccagcttgacatccccgaagtgctcagcgtcgccacgccgg 351 ||||| |||||||||| ||| ||| ||||||||| | |||| ||||| ||| |||| Sbjct: 369 ccaggagcgtctaccgctgctcgctcgacatcccc---ggcctcaccgtcgtcaccccgg 425 Query: 352 ggaccttcgtcaggaagaaggacgccgagcaggccgccgcgcagatcgccatcgaaaagc 411 | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||| Sbjct: 426 gcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagc 485 Query: 412 ttggtattncagcccacatc-aatattcctaatacacctgaagaagcctgggaggaactt 470 |||||||| |||||||| | ||| ||| | ||| ||||||||||| ||||| |||||| Sbjct: 486 ttggtatt-cagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaactt 544 Query: 471 attggtcggatatct 485 |||| ||| |||||| Sbjct: 545 attgctcgcatatct 559
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 208 bits (105), Expect = 1e-50 Identities = 203/235 (86%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 172 cgacggcgacgcccaaggcggtgatccaccagcggtacggcgccaaggccgtctacaagg 231 |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct: 3466637 cgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcg 3466578 Query: 232 tggacgaggtgcgggaggacgctgacggcgtctgccccggcctcgcgctgccgcagaaca 291 |||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| | | Sbjct: 3466577 tggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcaga 3466518 Query: 292 ccaggtgcgtctaccgatgccagcttgacatccccgaagtgctcagcgtcgccacgccgg 351 ||||| |||||||||| ||| ||| ||||||||| | |||| ||||| ||| |||| Sbjct: 3466517 ccaggagcgtctaccgctgctcgctcgacatcccc---ggcctcaccgtcgtcaccccgg 3466461 Query: 352 ggaccttcgtcaggaagaaggacgccgagcaggccgccgcgcagatcgccatcga 406 | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct: 3466460 gcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcga 3466406 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 447 cctgaagaagcctgggaggaacttattggtcggatatct 485 ||||||||||| ||||| |||||||||| ||| |||||| Sbjct: 3465849 cctgaagaagcatgggatgaacttattgctcgcatatct 3465811 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 atgccgacggcgacggcgacg 182 ||||||||||||||||||||| Sbjct: 14727610 atgccgacggcgacggcgacg 14727590
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 208 bits (105), Expect = 1e-50 Identities = 203/235 (86%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 172 cgacggcgacgcccaaggcggtgatccaccagcggtacggcgccaaggccgtctacaagg 231 |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct: 106457 cgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcg 106398 Query: 232 tggacgaggtgcgggaggacgctgacggcgtctgccccggcctcgcgctgccgcagaaca 291 |||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| | | Sbjct: 106397 tggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcaga 106338 Query: 292 ccaggtgcgtctaccgatgccagcttgacatccccgaagtgctcagcgtcgccacgccgg 351 ||||| |||||||||| ||| ||| ||||||||| | |||| ||||| ||| |||| Sbjct: 106337 ccaggagcgtctaccgctgctcgctcgacatcccc---ggcctcaccgtcgtcaccccgg 106281 Query: 352 ggaccttcgtcaggaagaaggacgccgagcaggccgccgcgcagatcgccatcga 406 | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct: 106280 gcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcga 106226 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 447 cctgaagaagcctgggaggaacttattggtcggatatct 485 ||||||||||| ||||| |||||||||| ||| |||||| Sbjct: 105669 cctgaagaagcatgggatgaacttattgctcgcatatct 105631
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 208 bits (105), Expect = 1e-50 Identities = 203/235 (86%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 172 cgacggcgacgcccaaggcggtgatccaccagcggtacggcgccaaggccgtctacaagg 231 |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct: 4587 cgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcg 4528 Query: 232 tggacgaggtgcgggaggacgctgacggcgtctgccccggcctcgcgctgccgcagaaca 291 |||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| | | Sbjct: 4527 tggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcaga 4468 Query: 292 ccaggtgcgtctaccgatgccagcttgacatccccgaagtgctcagcgtcgccacgccgg 351 ||||| |||||||||| ||| ||| ||||||||| | |||| ||||| ||| |||| Sbjct: 4467 ccaggagcgtctaccgctgctcgctcgacatcccc---ggcctcaccgtcgtcaccccgg 4411 Query: 352 ggaccttcgtcaggaagaaggacgccgagcaggccgccgcgcagatcgccatcga 406 | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct: 4410 gcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcga 4356 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 447 cctgaagaagcctgggaggaacttattggtcggatatct 485 ||||||||||| ||||| |||||||||| ||| |||||| Sbjct: 3799 cctgaagaagcatgggatgaacttattgctcgcatatct 3761
>ref|XM_589074.2| PREDICTED: Bos taurus similar to HEG homolog 1 (LOC511689), mRNA Length = 4618 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 253 ctgacggcgtctgccccggcctcgc 277 ||||||||||||||||||||||||| Sbjct: 1855 ctgacggcgtctgccccggcctcgc 1879
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgcagatcgcc 401 ||||| |||||||||||||||||||||| Sbjct: 975422 cgccgcgcaggccgccgcgcagatcgcc 975449 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 222 gtctacaaggtggacgaggtgcggg 246 ||||||| ||||||||||||||||| Sbjct: 855539 gtctacacggtggacgaggtgcggg 855563
>gb|DQ115815.1| Cyanobacteria phage AS-1 contig_8 genomic sequence Length = 1778 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 185 caaggcggtgatccaccagcggtacggcgcc 215 |||||||||||||| |||| ||||||||||| Sbjct: 293 caaggcggtgatccgccaggggtacggcgcc 263
>gb|AY110564.1| Zea mays CL2950_2 mRNA sequence Length = 602 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 355 ccttcgtcaggaagaaggacgc 376 |||||||||||||||||||||| Sbjct: 144 ccttcgtcaggaagaaggacgc 165
>ref|XM_482936.1| Oryza sativa (japonica cultivar-group), mRNA Length = 774 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 304 gccgacggcgacggcgacgcc 324
>ref|NM_192705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2301 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 1717 gccgacggcgacggcgacgcc 1737
>gb|AY273869.1| Pseudomonas aeruginosa PA14 pathogenicity island PAPI-1, complete sequence Length = 111332 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 aagaaggacgccgagcaggccgccgcgca 394 |||| |||||||||| ||||||||||||| Sbjct: 10488 aagacggacgccgagaaggccgccgcgca 10460
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 297857 gccgacggcgacggcgacgcc 297837
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 atgccgacggcgacggcgacgccca 186 |||||||||||||||||| |||||| Sbjct: 770988 atgccgacggcgacggcgtcgccca 770964
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 23457287 gccgacggcgacggcgacgcc 23457307 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gccgacggcgacggcgacgc 183 |||||||||||||||||||| Sbjct: 18306774 gccgacggcgacggcgacgc 18306755
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 23930820 gccgacggcgacggcgacgcc 23930840 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 40577064 atgccgacggcgacggcgac 40577083 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gccgccgcgcagatcgccat 403 |||||||||||||||||||| Sbjct: 29405527 gccgccgcgcagatcgccat 29405546
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 365 gaagaaggacgccgagcaggccgccgcgc 393 |||||||||||| |||||||| ||||||| Sbjct: 1894402 gaagaaggacgcggagcaggcggccgcgc 1894430 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tcgtcaggaagaaggacgcc 377 |||||||||||||||||||| Sbjct: 2532534 tcgtcaggaagaaggacgcc 2532553 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gtggacgaggtgcgggaggacgct 254 ||||||||||||||||| |||||| Sbjct: 131959 gtggacgaggtgcgggatgacgct 131982
>dbj|AP005451.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0443H10 Length = 144695 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 atgccgacggcgacggcgacg 182 ||||||||||||||||||||| Sbjct: 52377 atgccgacggcgacggcgacg 52357
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 139124 gccgacggcgacggcgacgcc 139144
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 cgccgagcaggccgccgcgca 394 ||||||||||||||||||||| Sbjct: 3050906 cgccgagcaggccgccgcgca 3050886
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 77224 gccgacggcgacggcgacgcc 77244
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 45342 gccgacggcgacggcgacgcc 45362
>dbj|AP005101.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0026I22 Length = 143302 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 atgccgacggcgacggcgacg 182 ||||||||||||||||||||| Sbjct: 120608 atgccgacggcgacggcgacg 120588
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 48702 gccgacggcgacggcgacgcc 48722
>dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full insert sequence Length = 1254 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 352 gccgacggcgacggcgacgcc 372
>dbj|AK105359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C12, full insert sequence Length = 1381 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 440 gccgacggcgacggcgacgcc 460
>dbj|AK071937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079C07, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgcc 184 ||||||||||||||||||||| Sbjct: 507 gccgacggcgacggcgacgcc 527
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 aaggccgtctacaaggtggacgaggtgcg 244 |||||||||||| ||| |||||||||||| Sbjct: 1137556 aaggccgtctacgaggaggacgaggtgcg 1137528
>gb|U50409.1|PCU50409 Phanerochaete chrysosporium cellobiose dehydrogenase (cdh-1) gene, complete cds Length = 3627 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgcagatc 398 ||||||||||||||||||| ||||| Sbjct: 3428 cgccgagcaggccgccgcgaagatc 3452
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgagcaggccgccgcgcag 395 ||||||||||||||||||||| Sbjct: 1091713 gccgagcaggccgccgcgcag 1091733
>ref|XM_482168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 183 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgc 183 |||||||||||||||||||| Sbjct: 40 gccgacggcgacggcgacgc 59
>ref|XM_464807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 768 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgacggcgacggcgacgcc 184 |||||||||||||||||||| Sbjct: 264 ccgacggcgacggcgacgcc 283
>ref|XM_464787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 633 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cggcgccaaggccgtctaca 228 |||||||||||||||||||| Sbjct: 531 cggcgccaaggccgtctaca 550
>ref|XM_463673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 735 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 410 atgccgacggcgacggcgac 429
>ref|XM_469733.1| Oryza sativa (japonica cultivar-group), mRNA Length = 765 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 286 cgacggcgacggcgacgccc 267
>gb|BT018480.1| Zea mays clone EL01N0424B07.d mRNA sequence Length = 1268 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tgccgacggcgacggcgacg 182 |||||||||||||||||||| Sbjct: 99 tgccgacggcgacggcgacg 118
>ref|XM_425507.1| PREDICTED: Gallus gallus similar to dJ127B20.3 (LOC427935), mRNA Length = 3855 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 gccccggcctcgcgctgccgcaga 288 ||||||||||||| |||||||||| Sbjct: 425 gccccggcctcgccctgccgcaga 448
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcaatgccgacggcgacggcgacg 182 |||||| ||||||||||||||||| Sbjct: 79626 gcaatggcgacggcgacggcgacg 79649
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 30449020 cgacggcgacggcgacgccc 30449039 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 10616665 cgacggcgacggcgacgccc 10616646
>gb|AC132442.3| Mus musculus BAC clone RP23-240K23 from chromosome 10, complete sequence Length = 201145 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 ttcctaatacacctgaagaa 455 |||||||||||||||||||| Sbjct: 59256 ttcctaatacacctgaagaa 59237
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 375 gccgagcaggccgccgcgcagatcgcca 402 ||||||||||||| ||||||||||||| Sbjct: 82982 gccgagcaggccgaggcgcagatcgcca 82955
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 33579 cgacggcgacggcgacgccc 33560
>emb|X87156.1|APOLYUBIQ Acanthamoeba sp. 4b3 polyubiquitin gene Length = 2388 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcaatgccgacggcgacggcgacg 182 |||||| ||||||||||||||||| Sbjct: 817 gcaatggcgacggcgacggcgacg 840
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 cgccgagcaggccgccgcgc 393 |||||||||||||||||||| Sbjct: 342751 cgccgagcaggccgccgcgc 342732
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgc 393 |||||||||||||||||||| Sbjct: 267893 cgccgagcaggccgccgcgc 267912
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 49241 cgacggcgacggcgacgccc 49260
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence Length = 149380 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 27995 cgacggcgacggcgacgccc 27976
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tgccgacggcgacggcgacg 182 |||||||||||||||||||| Sbjct: 1912551 tgccgacggcgacggcgacg 1912532
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcaatgccgacggcgacggcgacg 182 |||||| ||||||||||||||||| Sbjct: 4569159 gcaatggcgacggcgacggcgacg 4569182
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 30540442 cgacggcgacggcgacgccc 30540461 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgacggcgacggcgacgccc 185 |||||||||||||||||||| Sbjct: 10614766 cgacggcgacggcgacgccc 10614747
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgacggcgacggcgacgcc 184 |||||||||||||||||||| Sbjct: 8291836 ccgacggcgacggcgacgcc 8291855 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cggcgccaaggccgtctaca 228 |||||||||||||||||||| Sbjct: 7332447 cggcgccaaggccgtctaca 7332428
>gb|AF205589.5| Homo sapiens chromosome 8 clone CTA-393G12 map qtel, complete sequence Length = 143847 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ccccggcctcgcgctgccgc 285 |||||||||||||||||||| Sbjct: 25274 ccccggcctcgcgctgccgc 25255
>dbj|AB120735.1| Gryllus bimaculatus Gbhb mRNA for hunchback, complete cds Length = 2672 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gccgacggcgacggcgacgc 183 |||||||||||||||||||| Sbjct: 644 gccgacggcgacggcgacgc 663
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 19042 atgccgacggcgacggcgac 19061
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 138688 atgccgacggcgacggcgac 138707
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cgccgcgcagatcgccatcg 405 |||||||||||||||||||| Sbjct: 7796490 cgccgcgcagatcgccatcg 7796509 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 cgccgagcaggccgccgcgcagatcgcc 401 ||||||||||||||||| |||| ||||| Sbjct: 7252202 cgccgagcaggccgccgagcaggtcgcc 7252175
>gb|AE004886.1| Pseudomonas aeruginosa PAO1, section 447 of 529 of the complete genome Length = 10929 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgc 393 |||||||||||||||||||| Sbjct: 1354 cgccgagcaggccgccgcgc 1373
>gb|AF546142.1|AF546143S2 Kitasatospora sp. CECT 4991 UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 9390 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgcagatcgcc 401 |||||||||||||||||| | ||||||| Sbjct: 6562 cgccgagcaggccgccgcccggatcgcc 6589
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F09 Length = 138277 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gccgccgcgcagatcgccat 403 |||||||||||||||||||| Sbjct: 100589 gccgccgcgcagatcgccat 100608
>gb|AF014804.1|AF014804 Neisseria meningitidis PglB (pglB), PglC (pglC), PglD (pglD), and AvtA (avtA) genes, complete cds Length = 6449 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tgccgacggcgacggcgacg 182 |||||||||||||||||||| Sbjct: 1354 tgccgacggcgacggcgacg 1335
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgacggcgacggcgacgcc 184 |||||||||||||||||||| Sbjct: 123982 ccgacggcgacggcgacgcc 124001
>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08 Length = 136267 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cggcgccaaggccgtctaca 228 |||||||||||||||||||| Sbjct: 108255 cggcgccaaggccgtctaca 108236
>dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11, map 22, complete sequences Length = 219802 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 111140 cacctgaagaatcctgggaggaac 111117
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgacggcgacggcgacgcc 184 |||||||||||||||||||| Sbjct: 68507 ccgacggcgacggcgacgcc 68526
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gccgacggcgacggcgacgc 183 |||||||||||||||||||| Sbjct: 129086 gccgacggcgacggcgacgc 129067
>ref|XM_321337.2| Anopheles gambiae str. PEST ENSANGP00000022832 (ENSANGG00000010366), partial mRNA Length = 4698 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 aagaaggacgccgagcaggccgcc 389 ||||||||||||||| |||||||| Sbjct: 3244 aagaaggacgccgaggaggccgcc 3267
>ref|XM_321336.2| Anopheles gambiae str. PEST ENSANGP00000012855 (ENSANGG00000010366), partial mRNA Length = 5294 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 aagaaggacgccgagcaggccgcc 389 ||||||||||||||| |||||||| Sbjct: 3663 aagaaggacgccgaggaggccgcc 3686
>dbj|AK101457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040C05, full insert sequence Length = 1760 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gccgccgcgcagatcgccat 403 |||||||||||||||||||| Sbjct: 76 gccgccgcgcagatcgccat 95
>dbj|AK070355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M22, full insert sequence Length = 992 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 325 atgccgacggcgacggcgac 344
>dbj|AK069877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036D08, full insert sequence Length = 768 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgacggcgacggcgacgcc 184 |||||||||||||||||||| Sbjct: 264 ccgacggcgacggcgacgcc 283
>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 7453 cacctgaagaatcctgggaggaac 7430
>dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1212, LB7T-ERG region, complete sequences Length = 85691 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 58911 cacctgaagaatcctgggaggaac 58888
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 gccgagcaggccgccgcgcagatc 398 ||||||||||||| |||||||||| Sbjct: 582820 gccgagcaggccgtcgcgcagatc 582843
>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 110514 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 gcaatgccgacggcgacggcgacg 182 |||||| ||||||||||||||||| Sbjct: 104401 gcaatggcgacggcgacggcgacg 104378
>gb|AF000429.1|AF000429 Shuttle cosmid vector pFD666, complete sequence Length = 5251 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgagcaggccgccgcgca 394 |||||||||||||||||||| Sbjct: 4704 gccgagcaggccgccgcgca 4723
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 gccgagcaggccgccgcgcagatc 398 ||||||||||||| |||||||||| Sbjct: 582817 gccgagcaggccgtcgcgcagatc 582840
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gccgagcaggccgccgcgcagatc 398 ||||||||||||| |||||||||| Sbjct: 414301 gccgagcaggccgtcgcgcagatc 414278
>gb|U23762.1|SPU23762 Streptomyces phaeochromogenes plasmid pJV1, complete sequence Length = 11143 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgagcaggccgccgcgca 394 |||||||||||||||||||| Sbjct: 5009 gccgagcaggccgccgcgca 5028
>dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 2/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 76870 cacctgaagaatcctgggaggaac 76847
>dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 2/13 Length = 152345 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 76870 cacctgaagaatcctgggaggaac 76847
>dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 clone: T1212 and T1601, complete sequence Length = 110174 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 cacctgaagaagcctgggaggaac 468 ||||||||||| |||||||||||| Sbjct: 58907 cacctgaagaatcctgggaggaac 58884
>dbj|AB045630.1| Pseudomonas aeruginosa genes for glutamate-tRNA synthetase, CbrA, CbrB, complete cds Length = 6979 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgccgagcaggccgccgcgc 393 |||||||||||||||||||| Sbjct: 997 cgccgagcaggccgccgcgc 1016
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgccgacggcgacggcgac 181 |||||||||||||||||||| Sbjct: 57079 atgccgacggcgacggcgac 57098 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,963,116 Number of Sequences: 3902068 Number of extensions: 2963116 Number of successful extensions: 74565 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72037 Number of HSP's gapped (non-prelim): 2528 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
