>Y551_SYNY3 (P54123) Hypothetical UPF0036 protein slr0551|
          Length = 640

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPDTT 469
           L++LP+GGL EIG N  +    D  +L+ AG+ FP  D  GV  ++PD T
Sbjct: 10  LKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFPTDDMHGVNVVLPDMT 59

>YKQC_BACSU (Q45493) Hypothetical UPF0036 protein ykqC|
          Length = 555

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +2

Query: 326 VLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPDTT 469
           V  +GGLGEIG N   V   D  +LI AG+ FP+ +  G+  +IPD T
Sbjct: 11  VFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYT 58

>YE30_HELPJ (Q9ZJI6) Hypothetical UPF0036 protein jhp_1323|
          Length = 692

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPD 463
           +++ P+GGLGEIG N M++      I+I AG+ FP    FGV  +IPD
Sbjct: 144 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLFGVDILIPD 191

>Y1430_HELPY (P56185) Hypothetical UPF0036 protein HP1430|
          Length = 689

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPD 463
           +++ P+GGLGEIG N M++      I+I AG+ FP    FGV  +IPD
Sbjct: 141 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLFGVDILIPD 188

>Y1970_CORGL (P54122) Hypothetical UPF0036 protein Cgl1970/cg2160|
          Length = 718

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPD 463
           LR+  +GG+ EIG N  +    +R +++  GV+FP   E GV  I+PD
Sbjct: 155 LRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILPD 202

>Y280_MYCPN (P75497) Hypothetical UPF0036 protein MG139 homolog (A65_orf569)|
          Length = 569

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 299 EGVDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIP 460
           E V   P ++   GG+ E+G N   +   D  I+I  G+ F   D  G+  IIP
Sbjct: 9   EFVGKTPTKIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGIIP 62

>Y139_MYCGE (P47385) Hypothetical UPF0036 protein MG139|
          Length = 569

 Score = 35.0 bits (79), Expect = 0.097
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 317 PLRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIP 460
           P ++   GG+ E+G N   +   D  I+I  G+ F   D  G+  IIP
Sbjct: 15  PTKIYAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGINGIIP 62

>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +2

Query: 164 SCCVVAAPSGRGSHESRIPRRRFR------RTEGATESMEDSVKRKMEQFYEGVDGP 316
           +  V+A   G+G H S  P+RR +      +T+G+   +E SV  ++ +F    DGP
Sbjct: 80  NAAVIAKTRGKGGHSS--PQRRMKPKEFLEKTDGSVVKLESSVSERISRFDTMYDGP 134

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 150 RQPPYHAAWSQLPPAEGLTNPEYPVEGSEEPRVLLRAWKIQSSERWSSS-TRGWMVRPSG 326
           ++ P +AA  + PP  GLT P   +  + +  + L  W + S+   SSS T G    P G
Sbjct: 411 QESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGTPGPTSGPQG 470

Query: 327 SSQSAALGKSA*IACSSGTM 386
            SQ +A         SSGT+
Sbjct: 471 QSQPSAPSTK----LSSGTL 486

>POLG_PVYHU (Q02963) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3061

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 RGSHESRIPRRRFRRTEGATESMEDSVKRKMEQFYEGVDG 313
           RGSHE +I   R + T+G  +SM        E F+EG+DG
Sbjct: 259 RGSHEGKIYDARSKVTQGVMDSMVQF--SSAESFWEGLDG 296

>FLAG_VIBPA (Q56704) Protein flaG|
          Length = 144

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 201 DPLPEGAATTQHDMEVGAEAERRRSKPQRHREERE 97
           D  P+ A  T+HD  V A  E   S+ + +REERE
Sbjct: 40  DVSPQKAKGTEHDFSVQAAIEMAESRQELNREERE 74

>Y423_MYCGE (P47662) Hypothetical protein MG423|
          Length = 561

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPD 463
           ++   +GG  E G NC ++   +   +   G + P     GV+KIIPD
Sbjct: 4   IKFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTPTTAVLGVKKIIPD 51

>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1)
          Length = 2126

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 182 APSGRGSHESRIPRRRFRRTEGATESMEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGM 361
           APS  G HE R  +R +R+          SV+ +    +E    P LR+L +   G+  +
Sbjct: 832 APSSSGRHEGRTTKRHYRK----------SVRSRSR--HEKTSRPKLRILNVSNKGDRVV 879

Query: 362 NCML 373
            C L
Sbjct: 880 ECQL 883

>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1)
          Length = 2377

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 182  APSGRGSHESRIPRRRFRRTEGATESMEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGM 361
            APS  G HE R  +R +R+          SV+ +    +E    P LR+L +   G+  +
Sbjct: 1081 APSSSGRHEGRTTKRHYRK----------SVRSRSR--HEKTSRPKLRILNVSNKGDRVV 1128

Query: 362  NCML 373
             C L
Sbjct: 1129 ECQL 1132

>STIL_DROME (P92189) Protein stand still|
          Length = 321

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 179 AAPSGRGSHESRIP---RRRFRRTEGATESMEDSVKRK 283
           A PSG  SHE +I    +R  +  EGAT  +EDS   K
Sbjct: 127 AVPSGNESHELKIKTVFQRHKQEQEGATRKLEDSTSDK 164

>FDEH_PSEPU (P09347) 5-exo-alcohol dehydrogenase (EC 1.1.1.-) (FDEH)|
          Length = 361

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
 Frame = +2

Query: 146 SAPTSISCCVVAAPSGRGS----HESRIPRRRFRRTEGATE--SMEDSVKRKMEQFYE-- 301
           + P  ++  +VAA SG         S I R    R+ GATE  S+ D+   + ++  +  
Sbjct: 184 AGPVGLAAVLVAAASGAKDIIAIDHSPI-RLDMARSLGATETISLADTTPEERQRIVQER 242

Query: 302 -GVDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIP 460
            G  G  L V   G L        L GN+ RY+++G       +   G Q I P
Sbjct: 243 FGKRGASLVVEAAGALPAFPEGVNLTGNHGRYVILGL------WGAIGTQPISP 290

>NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 122 GFDRRRSASAPTSISCCVVAAPSGRGSHESRIPRRRFRRTEGATESMEDSVKRKMEQFYE 301
           G D +R       I CCV  A  G+GSH S     RF +   A   ++D ++  +   + 
Sbjct: 785 GLDIKRQEKNHLDILCCVRGADDGQGSHASESYLFRFFKNYFAPLLLKDWLRPIVVAVFV 844

Query: 302 GV 307
           GV
Sbjct: 845 GV 846

>Y621_MYCPN (P75174) Hypothetical protein MG423 homolog (C12_orf561)|
          Length = 561

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 GGLGEIGMNCMLVGNYDRYILIGAGVMFPDYDEFGVQKIIPD 463
           GG  E G NC ++   +   +   G + P     GV+KIIPD
Sbjct: 10  GGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPD 51

>Y1236_METJA (Q58633) Hypothetical protein MJ1236|
          Length = 634

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
 Frame = +2

Query: 320 LRVLPIGGLGEIGMNCMLVGNYDRYILIGAGV-------MFPDYD--EFGVQKI 454
           +RV  +GG  E+G +C+ V   D  +LI  G+        FP +D  EF ++ +
Sbjct: 180 IRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACEDKAFPHFDAPEFSIEDL 233

>YDGD_BACSU (P96702) Hypothetical protein ydgD|
          Length = 114

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 317 PLRVLPIGGLGEI-GMNCMLVGNYDRYILIGAGVMF 421
           PL  L + G+ EI G   M  G ++RY  IGAGV+F
Sbjct: 38  PLWFLTVTGILEIAGALAMTAGIWNRYAAIGAGVLF 73

>VCAP_HCMVA (P16729) Major capsid protein (MCP)|
          Length = 1370

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 167  CCVVAAPSGRGSHESRIPRRRFRRTEGATESMEDSVKRKMEQF--YEGVDG 313
            CCVV AP     +   +P  RF        ++ D +KR + +F  Y   DG
Sbjct: 921  CCVVTAPKTLIEYSLPVPFHRFYSNPTICAALSDDIKRYVTEFPHYHRHDG 971

>YSH1_YEAST (Q06224) Protein YSH1 (Yeast 73 kDa homolog 1)|
          Length = 779

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 335 IGGLGEIGMNCMLVGNYDRYILIGAGV--------MFPDYDEFGVQKI 454
           +GG  E+G +C ++    + +++ AG+          P YDEF + K+
Sbjct: 14  LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKV 61

>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 185  PSGRGSHESRIPRRRFRRTEGATESMEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGMN 364
            PS  G HE R  +R +R+          SV+ +    +E    P LR+L +   G+  + 
Sbjct: 1087 PSSSGRHEGRTTKRHYRK----------SVRSRSR--HEKTSRPKLRILNVSNKGDRVVE 1134

Query: 365  CML 373
            C L
Sbjct: 1135 CQL 1137

>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 332 GGPGGADHPPPRRTAPSF 279
           G  GG DH PP RTAP +
Sbjct: 289 GSGGGCDHCPPPRTAPGY 306

>ZN622_HUMAN (Q969S3) Zinc finger protein 622 (Zinc finger-like protein 9)|
          Length = 477

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 251 TESMEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIGAGVMFPDY 430
           TE+M+D V++  E+  E  +GPPL  +PI        +C+   ++   ++     M  D+
Sbjct: 224 TEAMDDVVEQDAEE-EEAEEGPPLGAIPI-------TDCLFCSHHSSSLMKNVAHMTKDH 275

Query: 431 DEFGVQKIIPD 463
             F     IPD
Sbjct: 276 SFF-----IPD 281

>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 617

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 356 RFPQGRRLGGPGGADH--PPPRRTAPS 282
           RF   +  GGPGGA H  PPP  + PS
Sbjct: 572 RFTPFKPAGGPGGAPHTGPPPPESFPS 598

>RSVR_COTJA (P98162) Subgroup A Rous sarcoma virus receptor PG900 precursor|
           (Low density lipoprotein receptor-related protein)
          Length = 157

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 40  PSLPAPGPNLPRRRHGR 90
           P++PAPG  LP R HGR
Sbjct: 86  PTVPAPGRALPARNHGR 102

>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1|
          Length = 244

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 407 HQSEYNGHSSRRACNSCRFPQGRRLGGPGG-ADHPPP 300
           +Q EY GHS  +  NS   P G R  G  G A  PPP
Sbjct: 117 YQGEYRGHSGYQRFNS-PAPVGTRYSGAAGPAARPPP 152

>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1585

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = +3

Query: 174 WSQLPPAEGLTNPEYPVEGSEEPRVLLRAWKIQSSERWSSSTRGWMVRPSGSSQSAA 344
           +S   PA   T+ EYP EG  EPR   RA    SS+   SS      R  GS +  A
Sbjct: 111 FSSSSPASYSTH-EYPTEGINEPRTSSRAPNTASSQMAESSCDFRSSRDIGSIRMGA 166

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 150 RQPPYHAAWSQLPPAEGLTNPEYPVEGSEEPRVLLRAWKIQSSERWSSSTRGWMVRPSGS 329
           ++ P +AA  + PP  GLT P   +  + +  + L  W + S+   +SS       P+  
Sbjct: 411 QESPKYAARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASS---GAPGPTSG 467

Query: 330 SQSAALGKSA*IACSSGTM 386
           SQ  +   +     SSGT+
Sbjct: 468 SQGQSQPSAPTTKLSSGTL 486


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,735,279
Number of Sequences: 219361
Number of extensions: 1326170
Number of successful extensions: 4780
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4774
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)