ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C 30 1.1
2YQ63_SCHPO (Q9Y7P7) Very hypothetical protein C191.03c in chromo... 28 4.0
3KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C 28 6.8
4KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like prot... 27 8.9
5HCP1_MOUSE (Q6PEM8) Heme carrier protein 1 27 8.9

>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C|
          Length = 1103

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 138  PATPAE----PRRGSSYRQGTVDGGGWLRVGGVSEP 43
            PATPA     PRR    R+ ++DGGG  R  G ++P
Sbjct: 1013 PATPARRPPSPRRSHHPRRNSLDGGGRSRGAGSAQP 1048



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>YQ63_SCHPO (Q9Y7P7) Very hypothetical protein C191.03c in chromosome III|
          Length = 117

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 156 LTRVASPPSP---SPFYLARRRLGPVRGLTHW 242
           LTR+ + PSP   SP Y   +R+ P RGLT +
Sbjct: 19  LTRLPAFPSPRILSPCYCYNKRIRPFRGLTSY 50



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>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C|
          Length = 1100

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 129  PAEPRRGSSYRQGTVDGGGWLRVGGVSEP 43
            P  PRR    R+ ++DGG   R GG ++P
Sbjct: 1018 PPSPRRPHRSRRNSLDGGSRSRGGGSTQP 1046



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>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)|
          Length = 1097

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 129  PAEPRRGSSYRQGTVDGGGWLRVGGVSEP 43
            P  PRR    R+ ++DGG   R GG ++P
Sbjct: 1015 PPSPRRPHRPRRNSLDGGSRSRGGGSTQP 1043



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>HCP1_MOUSE (Q6PEM8) Heme carrier protein 1|
          Length = 459

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  GGGWLRVGGVSEPHWIEGSLSLVCPL 4
           GG WLR  G + P W+  +L +V  L
Sbjct: 199 GGHWLRAQGYANPFWLALALLIVMAL 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,719,003
Number of Sequences: 219361
Number of extensions: 621844
Number of successful extensions: 1735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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