Clone Name | bastl02f03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C | 30 | 1.1 | 2 | YQ63_SCHPO (Q9Y7P7) Very hypothetical protein C191.03c in chromo... | 28 | 4.0 | 3 | KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C | 28 | 6.8 | 4 | KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like prot... | 27 | 8.9 | 5 | HCP1_MOUSE (Q6PEM8) Heme carrier protein 1 | 27 | 8.9 |
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>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = -1 Query: 138 PATPAE----PRRGSSYRQGTVDGGGWLRVGGVSEP 43 PATPA PRR R+ ++DGGG R G ++P Sbjct: 1013 PATPARRPPSPRRSHHPRRNSLDGGGRSRGAGSAQP 1048
>YQ63_SCHPO (Q9Y7P7) Very hypothetical protein C191.03c in chromosome III| Length = 117 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +3 Query: 156 LTRVASPPSP---SPFYLARRRLGPVRGLTHW 242 LTR+ + PSP SP Y +R+ P RGLT + Sbjct: 19 LTRLPAFPSPRILSPCYCYNKRIRPFRGLTSY 50
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 129 PAEPRRGSSYRQGTVDGGGWLRVGGVSEP 43 P PRR R+ ++DGG R GG ++P Sbjct: 1018 PPSPRRPHRSRRNSLDGGSRSRGGGSTQP 1046
>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)| Length = 1097 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 129 PAEPRRGSSYRQGTVDGGGWLRVGGVSEP 43 P PRR R+ ++DGG R GG ++P Sbjct: 1015 PPSPRRPHRPRRNSLDGGSRSRGGGSTQP 1043
>HCP1_MOUSE (Q6PEM8) Heme carrier protein 1| Length = 459 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 81 GGGWLRVGGVSEPHWIEGSLSLVCPL 4 GG WLR G + P W+ +L +V L Sbjct: 199 GGHWLRAQGYANPFWLALALLIVMAL 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,719,003 Number of Sequences: 219361 Number of extensions: 621844 Number of successful extensions: 1735 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1735 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)