Clone Name | bastl02e12 |
---|---|
Clone Library Name | barley_pub |
>FUT4_RAT (Q62994) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 433 Score = 32.0 bits (71), Expect = 0.70 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Frame = +1 Query: 70 GFLPPLPLWSFGAARRAL------RQWGWRGGSSGLPPSCGRRF 183 G LPPLP W+ A +R + +G RGG S PP C RF Sbjct: 74 GQLPPLP-WASPAPQRPVSVLLWWEPFGGRGGHSKPPPDCSLRF 116
>YHP4_SCHPO (Q9USP9) Probable RNA-binding protein C902.04| Length = 589 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 7 PRATPPVLLLPWATGAANLPRGFLPPLPLWSFGAA 111 P AT P +P G NLP +PP+P F A Sbjct: 145 PAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPA 179
>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (Mitochondrial ATP-binding cassette 2) (M-ABC2) Length = 738 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 17/78 (21%) Frame = +1 Query: 4 PPRATPPVLLLP----WATGAANLPRGFLP-------------PLPLWSFGAARRALRQW 132 PP P LLP WA A+ +P P P LW GAARR Sbjct: 14 PPSPAEPGRLLPVACVWAA-ASRVPGSLSPFTGLRPARLWGAGPALLWGVGAARR----- 67 Query: 133 GWRGGSSGLPPSCGRRFL 186 WR G G P R L Sbjct: 68 -WRSGCRGGGPGASRGVL 84
>CAT_CAMCO (P22782) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 207 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = +1 Query: 4 PPRATPPVLLLPWATGAA---NLPRGFLPPLPLWSFG 105 PP T PV ++PW + NL +G+ LP+++FG Sbjct: 131 PPENTFPVSMIPWTSFEGFNLNLKKGYDYLLPIFTFG 167
>FUT4_MOUSE (Q11127) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 433 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 6/44 (13%) Frame = +1 Query: 70 GFLPPLPLWSFGAARRALRQWGW------RGGSSGLPPSCGRRF 183 G LPPLP W+ A +R + W RGG PP C RF Sbjct: 74 GQLPPLP-WASPAPQRLVGVLLWWEPFRGRGGYPKSPPDCSLRF 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,480,119 Number of Sequences: 219361 Number of extensions: 653641 Number of successful extensions: 1719 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1718 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)