>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan|
           core protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 21  RFPAPGRSRALPNVTSPAMPGVPPFSSAVSKLHSRCHSLSTIQQLHAHLLH 173
           RF  P   + + NVT PA PG PP SS   ++    H    +      L+H
Sbjct: 543 RFDQPDDFKGV-NVTMPAQPGTPPLSSTQLQIDPSLHEFQLVDLSRRFLVH 592

>ENDR_BOVIN (P07106) Endozepine-related protein precursor (Membrane-associated|
           diazepam-binding inhibitor) (MA-DBI)
          Length = 533

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -3

Query: 172 WRRWACSCCMV--EREWH--REWSLE 107
           W  W C CC++  +R W   R W LE
Sbjct: 9   WESWCCCCCLIPGDRPWDRGRRWRLE 34

>VIE1_FRG3V (P03298) Immediate-early protein ICP-18|
          Length = 157

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 133 EWHREWSLETAEEKGGTPGIAGEVT---FGRALLLP 35
           EWH E   E  E  GGT  + GE T   FG A  +P
Sbjct: 108 EWHSECMYENLETDGGTVIVPGEATGQRFGTATEVP 143

>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan|
           core protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 57  NVTSPAMPGVPPFSSAVSKLHSRCHSLSTIQQLHAHLLH 173
           NVT P+ PGVPP SS   ++         +      L+H
Sbjct: 554 NVTMPSQPGVPPLSSTQLQIDPALQEFQLVDLSRRFLVH 592

>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 817

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 190 GMGRSWWRRWACSCCMVEREWHREWSLETAEEKG 89
           G GRS+W R  C CC        +W  E ++ +G
Sbjct: 38  GGGRSFWAR-CCGCCSCRNAADDDWGPEPSDSRG 70

>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 21  RFPAPGRSRALPNVTSPAMPGVPPFSSAVSKLHSRCHSL 137
           R P PG  R + ++  PA  G  P ++A +   SR HSL
Sbjct: 333 RAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQSRLHSL 371

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 54  PNVTSPAMPGVPPFS-SAVSKLHSRCHSLSTIQQ---LHAHLLHHDRPIPYNH 200
           P+  SP +P  P F  +  S   S  H  ST      + +HLLHH  P P  H
Sbjct: 672 PHRFSPKLPTTPDFEPTRTSPPPSTSHQDSTDPADPLMGSHLLHHSLPAPPTH 724

>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 21  RFPAPGRSRALPNVTSPAMPGVPPFSSAVSKLHSRCHSL 137
           R P PG  R + ++  PA  G  P ++A +   SR HSL
Sbjct: 329 RAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQSRLHSL 367

>CEG1A_DROME (Q9NGC3) Centaurin-gamma 1A|
          Length = 995

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +3

Query: 117 HSRCHSLSTI--QQLHAHLLH-HDRPIP----YNHFXXXXXXXXXXXXXXTAAADYVHLL 275
           HS  H+LS    QQ+H  L + H   +P    +NH               +A+A     +
Sbjct: 7   HSHPHALSHPHPQQVHNQLQNPHQNQLPPPQRHNHAAPTAAASASGAPSSSASASASASI 66

Query: 276 LTAHPTPTAFSFNVALR 326
           L AHP     S ++A+R
Sbjct: 67  LVAHPPQPLISNSLAIR 83

>TGM1_CANFA (Q9GLK0) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 815

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 184 GRSWWRRWACSCCMVEREWHREWSLETAEEKGGTPG 77
           GRS+W R  C CC        +W  E   ++G   G
Sbjct: 40  GRSFWAR-CCGCCSCRNRADDDWGPEPHRDRGSGSG 74

>CET1_YARLI (Q6C2H4) mRNA capping enzyme beta subunit (EC 3.1.3.33)|
           (Polynucleotide 5'-triphosphatase) (mRNA
           5'-triphosphatase) (TPase)
          Length = 386

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 36  GRSRALPNVTSPAMPGVPPFSSAVSKLHSRCHSLSTIQQLHAHL 167
           G SRALP  ++  + G PP  S +    S   ++++   LHAHL
Sbjct: 118 GGSRALPASSTTTITGCPPSISGIKPFESVTRTVTS--WLHAHL 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,174,475
Number of Sequences: 219361
Number of extensions: 499255
Number of successful extensions: 1986
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)