ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
2dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 92 1e-15
4gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 84 2e-13
5gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 84 2e-13
6ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa831... 46 0.054
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.054
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.054
9dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.054
10ref|XM_479592.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.84
11gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.84
12gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, comple... 42 0.84
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
14dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
15dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
16dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.84
17gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, compl... 42 0.84
18ref|XM_480820.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
19ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predic... 40 3.3
20gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 3.3
21gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 3.3
22gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL02... 40 3.3
23emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 3.3
24emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 3.3
25dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
26ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA 40 3.3
27gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete... 40 3.3
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
29dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.3
31gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:1036... 40 3.3
32dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
33dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
34dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
35dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds 40 3.3
36dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
37dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
38gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the ... 40 3.3
39dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
40dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
41dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
42gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 3.3 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 75       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27845868 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27845809

                                                                            
Query: 135      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27845808 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27845749

                  
Query: 195      gg 196
                ||
Sbjct: 27845748 gg 27845747



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                            
Query: 75       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27716358 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27716417

                                                                            
Query: 135      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
                  | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27716418 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27716477

                  
Query: 195      gg 196
                ||
Sbjct: 27716478 gg 27716479



 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 169      ccatcgccctcctcgccgtcgccgc 193
                |||||||||||||| ||||||||||
Sbjct: 22477385 ccatcgccctcctctccgtcgccgc 22477409
to top
>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full
           insert sequence
          Length = 3586

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 118/142 (83%)
 Strand = Plus / Plus

                                                                       
Query: 75  ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
           |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 137 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 196

                                                                       
Query: 135 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
             | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 197 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 256

                                 
Query: 195 ggggatggtgatcaaggtacaa 216
           |  ||||| || ||||| ||||
Sbjct: 257 gctgatggggaccaaggaacaa 278
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 75       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27869856 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27869797

                                                                            
Query: 135      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27869796 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27869737

                  
Query: 195      gg 196
                ||
Sbjct: 27869736 gg 27869735



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                            
Query: 75       ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27740346 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27740405

                                                                            
Query: 135      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
                  | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27740406 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27740465

                  
Query: 195      gg 196
                ||
Sbjct: 27740466 gg 27740467



 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 169      ccatcgccctcctcgccgtcgccgc 193
                |||||||||||||| ||||||||||
Sbjct: 22787296 ccatcgccctcctctccgtcgccgc 22787320
to top
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                        
Query: 75   ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
            |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 5615 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 5556

                                                                        
Query: 135  gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
              | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5555 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 5496

              
Query: 195  gg 196
            ||
Sbjct: 5495 gg 5494
to top
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21
              map R3342S, complete sequence
          Length = 133790

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                          
Query: 75     ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 134
              |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 129314 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 129255

                                                                          
Query: 135    gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 194
                | ||||| ||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 129254 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 129195

                
Query: 195    gg 196
              ||
Sbjct: 129194 gg 129193
to top
>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA
          Length = 1713

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 68  ccggagcctcctcgccgccaccc 90
           |||||||||||||||||||||||
Sbjct: 675 ccggagcctcctcgccgccaccc 653
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 68      ccggagcctcctcgccgccaccc 90
               |||||||||||||||||||||||
Sbjct: 8347567 ccggagcctcctcgccgccaccc 8347545



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 172      tcgccctcctcgccgtcgcc 191
                ||||||||||||||||||||
Sbjct: 40214424 tcgccctcctcgccgtcgcc 40214443



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      tcgccctcctcgccgtcgcc 191
                ||||||||||||||||||||
Sbjct: 25593597 tcgccctcctcgccgtcgcc 25593578



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      tcgccctcctcgccgtcgcc 191
                ||||||||||||||||||||
Sbjct: 23461169 tcgccctcctcgccgtcgcc 23461150
to top
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 68     ccggagcctcctcgccgccaccc 90
              |||||||||||||||||||||||
Sbjct: 141498 ccggagcctcctcgccgccaccc 141476
to top
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 68    ccggagcctcctcgccgccaccc 90
             |||||||||||||||||||||||
Sbjct: 12193 ccggagcctcctcgccgccaccc 12171
to top
>ref|XM_479592.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 cgccctcctcgccgtcgccgc 193
           |||||||||||||||||||||
Sbjct: 51  cgccctcctcgccgtcgccgc 71
to top
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 169   ccatcgccctcctcgccgtcgccgc 193
             |||||||||||||| ||||||||||
Sbjct: 34530 ccatcgccctcctctccgtcgccgc 34554
to top
>gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, complete sequence
          Length = 155470

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   ccctcctcgccgtcgccgcagggga 199
             ||||||||||||||||||| |||||
Sbjct: 88414 ccctcctcgccgtcgccgcggggga 88390
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 173      cgccctcctcgccgtcgccgc 193
                |||||||||||||||||||||
Sbjct: 29099757 cgccctcctcgccgtcgccgc 29099737
to top
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   cgccctcctcgccgtcgccgc 193
             |||||||||||||||||||||
Sbjct: 34875 cgccctcctcgccgtcgccgc 34855
to top
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   cgccctcctcgccgtcgccgc 193
             |||||||||||||||||||||
Sbjct: 47714 cgccctcctcgccgtcgccgc 47694
to top
>dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full
           insert sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 cgccctcctcgccgtcgccgc 193
           |||||||||||||||||||||
Sbjct: 100 cgccctcctcgccgtcgccgc 120
to top
>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence
          Length = 177231

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   ccctcctcgccgtcgccgcagggga 199
             ||||||||||||||||||| |||||
Sbjct: 42712 ccctcctcgccgtcgccgccgggga 42688
to top
>ref|XM_480820.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 697

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 ccccatcgccctcctcgccg 186
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
to top
>ref|NM_192244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tcgccctcctcgccgtcgcc 191
            ||||||||||||||||||||
Sbjct: 1343 tcgccctcctcgccgtcgcc 1324
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     gatctccgcggccggcgacc 159
               ||||||||||||||||||||
Sbjct: 1024066 gatctccgcggccggcgacc 1024085
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gccgacaaaacgtccgtgga 115
               ||||||||||||||||||||
Sbjct: 2241288 gccgacaaaacgtccgtgga 2241269
to top
>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene
            region
          Length = 16710

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tcgccctcctcgccgtcgcc 191
            ||||||||||||||||||||
Sbjct: 5172 tcgccctcctcgccgtcgcc 5191
to top
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    gatctccgcggccggcgacc 159
              ||||||||||||||||||||
Sbjct: 339780 gatctccgcggccggcgacc 339799
to top
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   gatctccgcggccggcgacc 159
             ||||||||||||||||||||
Sbjct: 37519 gatctccgcggccggcgacc 37538
to top
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tcgccctcctcgccgtcgcc 191
             ||||||||||||||||||||
Sbjct: 13376 tcgccctcctcgccgtcgcc 13395
to top
>ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   cctcctcgccgccaccctca 93
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
to top
>gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete genome
          Length = 37074

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 186   gtcgccgcaggggatggtgatcaa 209
             |||||||| |||||||||||||||
Sbjct: 11201 gtcgccgctggggatggtgatcaa 11224
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     ccccatcgccctcctcgccg 186
               ||||||||||||||||||||
Sbjct: 7966622 ccccatcgccctcctcgccg 7966603
to top
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tcgccctcctcgccgtcgcc 191
             ||||||||||||||||||||
Sbjct: 80202 tcgccctcctcgccgtcgcc 80221
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      tcgccgccaccctcagcgcc 98
               ||||||||||||||||||||
Sbjct: 5832567 tcgccgccaccctcagcgcc 5832586
to top
>gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:103673 IMAGE:7256976),
            complete cds
          Length = 3274

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   cctcctcgccgccaccctca 93
            ||||||||||||||||||||
Sbjct: 2193 cctcctcgccgccaccctca 2174
to top
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   ccccatcgccctcctcgccg 186
             ||||||||||||||||||||
Sbjct: 38792 ccccatcgccctcctcgccg 38773
to top
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tcgccctcctcgccgtcgcc 191
             ||||||||||||||||||||
Sbjct: 40403 tcgccctcctcgccgtcgcc 40384
to top
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tcgccctcctcgccgtcgcc 191
              ||||||||||||||||||||
Sbjct: 121200 tcgccctcctcgccgtcgcc 121181
to top
>dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   cctcctcgccgccaccctca 93
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
to top
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tcgccctcctcgccgtcgcc 191
             ||||||||||||||||||||
Sbjct: 24474 tcgccctcctcgccgtcgcc 24455
to top
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1425D05, complete sequence
          Length = 66450

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tcgccctcctcgccgtcgcc 191
            ||||||||||||||||||||
Sbjct: 5774 tcgccctcctcgccgtcgcc 5793
to top
>gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the complete genome
          Length = 16488

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  tctccgcggccggcgacccc 161
            ||||||||||||||||||||
Sbjct: 7611 tctccgcggccggcgacccc 7630
to top
>dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A06, full
           insert sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 ccccatcgccctcctcgccg 186
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
to top
>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tcgccctcctcgccgtcgcc 191
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
to top
>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tcgccctcctcgccgtcgcc 191
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      cctcctcgccgccaccctca 93
               ||||||||||||||||||||
Sbjct: 1751706 cctcctcgccgccaccctca 1751725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,570,687
Number of Sequences: 3902068
Number of extensions: 1570687
Number of successful extensions: 40046
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39183
Number of HSP's gapped (non-prelim): 860
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top