Clone Information

BLAST Search Result

Clone Name	bastl02d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466605.1\| Oryza sativa (japonica cultivar-group), mRNA	210	3e-51
2	ref\|XM_506856.1\| PREDICTED Oryza sativa (japonica cultivar-group...	210	3e-51
3	dbj\|AK120769.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	210	3e-51
4	dbj\|AK105762.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	210	3e-51
5	gb\|AY562489.1\| Zea mays hydroxymethylbutenyl 4-diphosphate synth...	172	6e-40
6	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
7	dbj\|AP004124.3\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
8	gb\|AY562488.1\| Zea mays hydroxymethylbutenyl 4-diphosphate synth...	105	1e-19
9	ref\|XM_752536.1\| Ustilago maydis 521 hypothetical protein (UM014...	46	0.098
10	ref\|XM_415558.1\| PREDICTED: Gallus gallus similar to phosphohist...	42	1.5
11	gb\|BT014629.1\| Lycopersicon esculentum clone 134132R, mRNA sequence	42	1.5
12	dbj\|AP007161.1\| Aspergillus oryzae RIB40 genomic DNA, SC012	42	1.5
13	gb\|AF435086.1\| Lycopersicon esculentum GcpE mRNA, complete cds	42	1.5
14	gb\|AY515283.1\| Pseudemys concinna haplotype 79 cytochrome b-like...	40	6.0
15	gb\|AY515281.1\| Pseudemys concinna haplotype 87 cytochrome b-like...	40	6.0
16	ref\|NM_101931.2\| Arabidopsis thaliana unknown protein AT1G20790 ...	40	6.0
17	gb\|AY365053.1\| Ralstonia eutropha JMP134 plasmid pJP4, complete ...	40	6.0
18	emb\|AJ863570.1\| IncP-1beta multiresistance plasmid pB8	40	6.0
19	gb\|CP000093.1\| Ralstonia eutropha JMP134 plasmid 1, complete seq...	40	6.0
20	gb\|U66917.2\| Pseudomonas sp. ADP atrazine catabolic plasmid pADP...	40	6.0
21	emb\|X54458.1\|ECR751 E. coli plasmid R751 traF (5'end), traG, tra...	40	6.0
22	emb\|AJ639924.1\| Plasmid pB3 complete genome	40	6.0
23	emb\|AJ564903.1\|UBA564903 Uncultured bacterium IncP-1beta multire...	40	6.0
24	emb\|AL929089.5\| Mouse DNA sequence from clone RP24-402O2 on chro...	40	6.0
25	gb\|U67194.4\|EAU67194 Enterobacter aerogenes plasmid R751, comple...	40	6.0
26	dbj\|AB063332.1\| Delftia acidovorans plasmid pUO1 DNA, complete s...	40	6.0
27	gb\|AF258877.1\| Deirochelys reticularia cytochrome b gene, comple...	40	6.0
28	gb\|AC007665.24\| Mus musculus strain RIII Fibroblast cell line C1...	40	6.0
29	gb\|AC069251.5\|AC069251 Genomic sequence for Arabidopsis thaliana...	40	6.0
30	emb\|AM048832.1\| Uncultured bacterium mercury resistance plasmid ...	40	6.0
31	dbj\|AP006424.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	40	6.0

>ref|XM_466605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2494

 Score =  210 bits (106), Expect = 3e-51
 Identities = 262/314 (83%)
 Strand = Plus / Plus

                                                                       
Query: 136 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
           ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 156 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 215

                                                                       
Query: 196 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
           ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 216 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 275

                                                                       
Query: 256 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
           ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 276 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 335

                                                                       
Query: 316 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 375
           |||||||||||||||||  | || ||||||||||||||| ||||||||||||| ||||| 
Sbjct: 336 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 395

                                                                       
Query: 376 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 435
           || ||||||||| |  ||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 396 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 455

                         
Query: 436 gcactcggcagtga 449
            |||| ||||||||
Sbjct: 456 ccacttggcagtga 469

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>ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1669_F01.30
           mRNA
          Length = 2675

 Score =  210 bits (106), Expect = 3e-51
 Identities = 262/314 (83%)
 Strand = Plus / Plus

                                                                       
Query: 136 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
           ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 149 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 208

                                                                       
Query: 196 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
           ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 209 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 268

                                                                       
Query: 256 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
           ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 269 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 328

                                                                       
Query: 316 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 375
           |||||||||||||||||  | || ||||||||||||||| ||||||||||||| ||||| 
Sbjct: 329 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 388

                                                                       
Query: 376 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 435
           || ||||||||| |  ||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 389 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 448

                         
Query: 436 gcactcggcagtga 449
            |||| ||||||||
Sbjct: 449 ccacttggcagtga 462

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>dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full
           insert sequence
          Length = 2675

 Score =  210 bits (106), Expect = 3e-51
 Identities = 262/314 (83%)
 Strand = Plus / Plus

                                                                       
Query: 136 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
           ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 149 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 208

                                                                       
Query: 196 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
           ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 209 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 268

                                                                       
Query: 256 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
           ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 269 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 328

                                                                       
Query: 316 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 375
           |||||||||||||||||  | || ||||||||||||||| ||||||||||||| ||||| 
Sbjct: 329 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 388

                                                                       
Query: 376 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 435
           || ||||||||| |  ||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 389 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 448

                         
Query: 436 gcactcggcagtga 449
            |||| ||||||||
Sbjct: 449 ccacttggcagtga 462

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>dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D08, full
           insert sequence
          Length = 2494

 Score =  210 bits (106), Expect = 3e-51
 Identities = 262/314 (83%)
 Strand = Plus / Plus

                                                                       
Query: 136 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
           ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 156 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 215

                                                                       
Query: 196 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
           ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 216 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 275

                                                                       
Query: 256 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
           ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 276 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 335

                                                                       
Query: 316 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 375
           |||||||||||||||||  | || ||||||||||||||| ||||||||||||| ||||| 
Sbjct: 336 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 395

                                                                       
Query: 376 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 435
           || ||||||||| |  ||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 396 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 455

                         
Query: 436 gcactcggcagtga 449
            |||| ||||||||
Sbjct: 456 ccacttggcagtga 469

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>gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) mRNA,
           complete cds
          Length = 2631

 Score =  172 bits (87), Expect = 6e-40
 Identities = 156/179 (87%)
 Strand = Plus / Plus

                                                                       
Query: 271 agaggcagggcgctcgtggtcaagagctcaagtacagagtctgataccatggagctcgag 330
           |||||||||||||||||||  |||||||| ||||| |  || || |||||||||||||||
Sbjct: 337 agaggcagggcgctcgtggcgaagagctctagtactggctcggagaccatggagctcgag 396

                                                                       
Query: 331 ccggcctccgaaggaagcccacttctagttcccaggcagaagtactgcgaatctatacac 390
           ||  | || ||||||||||||||| |||| ||||||||||||||||| ||||| | ||||
Sbjct: 397 ccatcttcagaaggaagcccacttttagtacccaggcagaagtactgtgaatcaacacac 456

                                                                      
Query: 391 cagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtggcactcggcagtga 449
           |||||||||||||||||||| || ||||||||||| ||||| ||| |||| ||||||||
Sbjct: 457 cagacaaggaggaggaaaactcgaactgtgatggtggggaatgtgccacttggcagtga 515



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 76  acggtgctgcgaggtgtttgtaggat 101
           |||| |||||||||||||||||||||
Sbjct: 142 acggagctgcgaggtgtttgtaggat 167

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  125 bits (63), Expect = 1e-25
 Identities = 180/219 (82%)
 Strand = Plus / Minus

                                                                            
Query: 136      atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
                ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 23677605 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 23677546

                                                                            
Query: 196      ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
                ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 23677545 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 23677486

                                                                            
Query: 256      aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
                ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 23677485 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 23677426

                                                       
Query: 316      accatggagctcgagccggcctccgaaggaagcccactt 354
                |||||||||||||||||  | || |||||||||||||||
Sbjct: 23677425 accatggagctcgagccatcttcagaaggaagcccactt 23677387



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                            
Query: 356      tagttcccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgca 415
                ||||||||||||| ||||| || ||||||||| |  ||||||||||||| ||||| ||||
Sbjct: 23677254 tagttcccaggcaaaagtattgtgaatctatatatgagacaaggaggagaaaaacccgca 23677195

                                                  
Query: 416      ctgtgatggtcgggaacgtggcactcggcagtga 449
                |||||||||| ||||| ||| |||| ||||||||
Sbjct: 23677194 ctgtgatggttgggaatgtgccacttggcagtga 23677161

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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score =  125 bits (63), Expect = 1e-25
 Identities = 180/219 (82%)
 Strand = Plus / Minus

                                                                          
Query: 136    atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 195
              ||||||||||||||||| |||||||| || ||||| ||  | |||| |||||| || || 
Sbjct: 118705 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 118646

                                                                          
Query: 196    ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 255
              ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || 
Sbjct: 118645 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 118586

                                                                          
Query: 256    aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 315
              ||| |||| ||  |||||||||||| ||| |||| ||||||||||||||| |  ||||||
Sbjct: 118585 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 118526

                                                     
Query: 316    accatggagctcgagccggcctccgaaggaagcccactt 354
              |||||||||||||||||  | || |||||||||||||||
Sbjct: 118525 accatggagctcgagccatcttcagaaggaagcccactt 118487



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                          
Query: 356    tagttcccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgca 415
              ||||||||||||| ||||| || ||||||||| |  ||||||||||||| ||||| ||||
Sbjct: 118354 tagttcccaggcaaaagtattgtgaatctatatatgagacaaggaggagaaaaacccgca 118295

                                                
Query: 416    ctgtgatggtcgggaacgtggcactcggcagtga 449
              |||||||||| ||||| ||| |||| ||||||||
Sbjct: 118294 ctgtgatggttgggaatgtgccacttggcagtga 118261

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>gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) gene,
            complete cds
          Length = 6353

 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                        
Query: 361  cccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgcactgtg 420
            ||||||||||||||||| ||||| | |||||||||||||||||||||||| || ||||||
Sbjct: 1187 cccaggcagaagtactgtgaatcaacacaccagacaaggaggaggaaaactcgaactgtg 1246

                                         
Query: 421  atggtcgggaacgtggcactcggcagtga 449
            ||||| ||||| ||| |||| ||||||||
Sbjct: 1247 atggtggggaatgtgccacttggcagtga 1275



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 271  agaggcagggcgctcgtggtcaagagctcaagtacagagtctgataccatggagctcgag 330
            |||||||||||||||||||  |||||||| ||||| |  || || |||||||||||||||
Sbjct: 977  agaggcagggcgctcgtggcgaagagctctagtactggctcggagaccatggagctcgag 1036

                                    
Query: 331  ccggcctccgaaggaagcccactt 354
            ||  | || |||||||||||||||
Sbjct: 1037 ccatcttcagaaggaagcccactt 1060

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>ref|XM_752536.1| Ustilago maydis 521 hypothetical protein (UM01482.1) partial mRNA
          Length = 3066

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 314  ataccatggagctcgagccggcc 336
            |||||||||||||||||||||||
Sbjct: 1949 ataccatggagctcgagccggcc 1971

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>ref|XM_415558.1| PREDICTED: Gallus gallus similar to phosphohistidine phosphatase 1;
           1700008C22Rik; sex-regulated protein janus-a
           (LOC417285), mRNA
          Length = 1129

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 65  ggcgccgcgggacggtgctgcgagg 89
           ||||||||||||||| |||||||||
Sbjct: 295 ggcgccgcgggacggggctgcgagg 319

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>gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence
          Length = 2527

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 413 gcactgtgatggtcgggaacgtggc 437
           ||||||||||||| |||||||||||
Sbjct: 312 gcactgtgatggttgggaacgtggc 336

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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 116     ttcgaagcttgggcataggca 136
               |||||||||||||||||||||
Sbjct: 2255341 ttcgaagcttgggcataggca 2255321

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>gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds
          Length = 2373

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 413 gcactgtgatggtcgggaacgtggc 437
           ||||||||||||| |||||||||||
Sbjct: 334 gcactgtgatggttgggaacgtggc 358

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>gb|AY515283.1| Pseudemys concinna haplotype 79 cytochrome b-like (cytb) gene,
           partial sequence; tRNA-Thr and tRNA-Pro genes, complete
           sequence; and control region, partial sequence;
           mitochondrial
          Length = 1310

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  ttgtaggattgcgtaggcga 112
           ||||||||||||||||||||
Sbjct: 312 ttgtaggattgcgtaggcga 293

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>gb|AY515281.1| Pseudemys concinna haplotype 87 cytochrome b-like (cytb) gene,
           partial sequence; tRNA-Thr and tRNA-Pro genes, complete
           sequence; and control region, partial sequence;
           mitochondrial
          Length = 1318

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  ttgtaggattgcgtaggcga 112
           ||||||||||||||||||||
Sbjct: 310 ttgtaggattgcgtaggcga 291

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>ref|NM_101931.2| Arabidopsis thaliana unknown protein AT1G20790 mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  ggcataggcatagccatggc 146
            ||||||||||||||||||||
Sbjct: 1181 ggcataggcatagccatggc 1162



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 125  tgggcataggcatagccatggcca 148
            ||||||||||||||| ||||||||
Sbjct: 1159 tgggcataggcataggcatggcca 1136

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>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 82047 gccatcggctcggcggcccgcgac 82024

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>emb|AJ863570.1| IncP-1beta multiresistance plasmid pB8
          Length = 57198

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 42374 gccatcggctcggcggcccgcgac 42351

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>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 82047 gccatcggctcggcggcccgcgac 82024

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>gb|U66917.2| Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete
             sequence
          Length = 108845

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 15800 gccatcggctcggcggcccgcgac 15823

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>emb|X54458.1|ECR751 E. coli plasmid R751 traF (5'end), traG, traH, traI, traJ, traK and
           traL (5'end) genes of the transfer region
          Length = 5499

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 20  gccatcggctgggcggcccgcgac 43
           |||||||||| |||||||||||||
Sbjct: 915 gccatcggctcggcggcccgcgac 892

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>emb|AJ639924.1| Plasmid pB3 complete genome
          Length = 56167

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 42090 gccatcggctcggcggcccgcgac 42067

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>emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multiresistance plasmid pB10
          Length = 64508

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 27591 gccatcggctcggcggcccgcgac 27568

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>emb|AL929089.5| Mouse DNA sequence from clone RP24-402O2 on chromosome 11 Contains a
             novel gene (1700106J16Rik), complete sequence
          Length = 71354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ggccaccggggtggcaccggctcc 167
             |||||||||| |||||||||||||
Sbjct: 35165 ggccaccgggctggcaccggctcc 35142

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>gb|U67194.4|EAU67194 Enterobacter aerogenes plasmid R751, complete sequence
          Length = 53423

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 47780 gccatcggctcggcggcccgcgac 47757

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>dbj|AB063332.1| Delftia acidovorans plasmid pUO1 DNA, complete sequence
          Length = 67066

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 52829 gccatcggctcggcggcccgcgac 52806

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>gb|AF258877.1| Deirochelys reticularia cytochrome b gene, complete cds;
           mitochondrial gene for mitochondrial product
          Length = 1190

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  ttgtaggattgcgtaggcga 112
           ||||||||||||||||||||
Sbjct: 849 ttgtaggattgcgtaggcga 830

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>gb|AC007665.24| Mus musculus strain RIII Fibroblast cell line C127 chromosome 18 clone
             mgsriii-p1_3084, complete sequence
          Length = 85548

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ccagacaaggaggaggaaaa 409
             ||||||||||||||||||||
Sbjct: 83262 ccagacaaggaggaggaaaa 83243

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>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
              complete sequence
          Length = 143879

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    tgggcataggcatagccatggcca 148
              ||||||||||||||| ||||||||
Sbjct: 111567 tgggcataggcataggcatggcca 111590



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    ggcataggcatagccatggc 146
              ||||||||||||||||||||
Sbjct: 111545 ggcataggcatagccatggc 111564

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>emb|AM048832.1| Uncultured bacterium mercury resistance plasmid pTP6
          Length = 54344

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    gccatcggctgggcggcccgcgac 43
             |||||||||| |||||||||||||
Sbjct: 48704 gccatcggctcggcggcccgcgac 48681

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>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314,
              complete sequence
          Length = 126349

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    tgggcataggcatagccatg 144
              ||||||||||||||||||||
Sbjct: 102218 tgggcataggcatagccatg 102237


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,051
Number of Sequences: 3902068
Number of extensions: 2645051
Number of successful extensions: 47119
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47031
Number of HSP's gapped (non-prelim): 82
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result