>POLN_RRVN (P13887) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2479

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2    TKPYPTPLPKP-SHRRLPRSAHLRERASGLHLSPSPGRRTSRAQRICS 142
            T  Y TP+P P + R +P  A   +RAS   +SP+P  R  RA  +CS
Sbjct: 1753 TSEYATPIPTPRAVRVVPVPAPRIQRASTYRVSPTPTPRVLRAS-VCS 1799

>POLN_RRVT (P13888) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: Nonstructural protein 3 (nsP3); RNA-directed
           RNA polymerase nsP4 (EC 2.7.7.48) (Nonstructural protein
           4) (nsP4)] (Fragment)
          Length = 1148

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   TKPYPTPLPKPSHRRL-PRSAHLRERASGLHLSPSPGRRTSRAQRICS 142
           T  Y  P+P P   R+ P  A   +RAS   +SP+P  R  RA  +CS
Sbjct: 422 TSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRAS-VCS 468

>HM23_CAEEL (P34663) Homeobox protein ceh-23|
          Length = 305

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -1

Query: 434 TAAALDS*RLPTSAFSLSLRDGKLSPTLSLGAASTESNLFPPSR 303
           T AAL +   PTS    S   G LSP L   A     NLFPPS+
Sbjct: 29  TIAALQA--CPTSCIP-STSTGMLSPNLPFSATIPRVNLFPPSQ 69

>CHQB_NOCSI (Q5PXQ6) Hydroxyquinol 1,2-dioxygenase (EC 1.13.11.37) (1,2-HQD)|
          Length = 293

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 8   PYPTPLPKPSHRRLPRSAHLRERASGLH-LSPSPGRRT 118
           PYP P   P  R L  +     RAS LH +  +PGRRT
Sbjct: 196 PYPIPHDGPVGRMLAATGRSPMRASHLHFMVTAPGRRT 233

>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR|
          Length = 305

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 14  PTPLPKPSHRRLPRSAH-LRERASGLHLSPSPGR 112
           P P PKP  RRL R    LR R   L   P PG+
Sbjct: 28  PKPEPKPKQRRLCRKVFPLRARCGALAHCPIPGK 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,494,545
Number of Sequences: 219361
Number of extensions: 772783
Number of successful extensions: 1919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)