ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
2dbj|AK121271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
3emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 113 5e-22
4emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4,... 113 5e-22
5ref|XM_473207.1| Oryza sativa (japonica cultivar-group), predic... 111 2e-21
6gb|AC151485.5| Monodelphis domestica, clone XX-214B11, complete ... 44 0.36
7ref|XM_364860.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.4
8emb|BX927144.24| Zebrafish DNA sequence from clone CH211-216K22 ... 42 1.4
9emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, comp... 42 1.4
10emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 i... 42 1.4
11gb|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325... 42 1.4
12gb|AC023908.6|AC023908 Homo sapiens chromosome 15 clone RP11-37C... 42 1.4
13ref|XM_364064.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.7
14ref|XM_419772.1| PREDICTED: Gallus gallus similar to ST3A1 (LOC4... 40 5.7
15gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome ... 40 5.7
16gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.7
17gb|AC136965.2| Canis familiaris clone RP81-213K20, complete sequ... 40 5.7
18gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosom... 40 5.7
19gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's H... 40 5.7
20emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, stra... 40 5.7
21emb|CR318611.4| Zebrafish DNA sequence from clone DKEY-199F5 in ... 40 5.7
22emb|BX248113.22| Zebrafish DNA sequence from clone CH211-132F21,... 40 5.7
23ref|XM_695675.1| PREDICTED: Danio rerio similar to immunoglobuli... 40 5.7
24gb|AC157591.2| Mus musculus BAC clone RP23-311C13 from chromosom... 40 5.7
25emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 i... 40 5.7
26dbj|AK080448.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 5.7
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
28emb|BX934942.1| Gallus gallus finished cDNA, clone ChEST151l24 40 5.7
29emb|BX323052.5| Zebrafish DNA sequence from clone CH211-234A12 i... 40 5.7
30gb|AC090957.1| Homo sapiens chromosome 3 clone RP11-708D1 map 3p... 40 5.7
31emb|BX248122.10| Zebrafish DNA sequence from clone CH211-214C20 ... 40 5.7
32emb|BX511214.8| Zebrafish DNA sequence from clone DKEY-191C11, c... 40 5.7
33emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in... 40 5.7
34dbj|AK069699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
35emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 i... 40 5.7
36emb|AL714005.17| Zebrafish DNA sequence from clone BUSM1-13F19 i... 40 5.7
37emb|AL928944.8| Zebrafish DNA sequence from clone DKEYP-2H4 in l... 40 5.7
38tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for c... 40 5.7
39emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 i... 40 5.7
40emb|CT010507.11| Mouse DNA sequence from clone RP23-259G10 on ch... 40 5.7
41gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, com... 40 5.7
42emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-2... 40 5.7
43emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed ... 40 5.7
44emb|AL954724.9| Zebrafish DNA sequence from clone CH211-265P12, ... 40 5.7
45emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chr... 40 5.7
46gb|AC140321.3| Mus musculus BAC clone RP23-402K6 from 1, complet... 40 5.7
47gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosom... 40 5.7
48emb|AL669961.8| Mouse DNA sequence from clone RP23-43M17 on chro... 40 5.7 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                            
Query: 327      ttgctggggttgtttatacttttccttcatggatcctggtctgtttaccgtatgcagttt 386
                |||||||| ||||| ||  | |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 26007107 ttgctgggattgttgatggtcttccttcatggatcctggtctgtttatcgttttcagttt 26007048

                                                     
Query: 387      gcaaatcttcctttgccccttaatgctgagcaggctg 423
                ||||||||||||||||||||| ||||||| |||||||
Sbjct: 26007047 gcaaatcttcctttgccccttgatgctgaacaggctg 26007011



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                            
Query: 210      acatacagaatgcctcgagggcgaggttcgtctgtgtcaacccaagagaagcctaatgct 269
                |||| ||||||||||||||||||||| || |||||  ||||||| ||||| || || | |
Sbjct: 26007224 acatgcagaatgcctcgagggcgaggctcttctgtcacaacccatgagaaacccaaagtt 26007165

                            
Query: 270      gatgcagcagtc 281
                |||| |||||||
Sbjct: 26007164 gatgaagcagtc 26007153
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>dbj|AK121271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106H08, full
           insert sequence
          Length = 4625

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                       
Query: 327 ttgctggggttgtttatacttttccttcatggatcctggtctgtttaccgtatgcagttt 386
           |||||||| ||||| ||  | |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 315 ttgctgggattgttgatggtcttccttcatggatcctggtctgtttatcgttttcagttt 374

                                                
Query: 387 gcaaatcttcctttgccccttaatgctgagcaggctg 423
           ||||||||||||||||||||| ||||||| |||||||
Sbjct: 375 gcaaatcttcctttgccccttgatgctgaacaggctg 411



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 210 acatacagaatgcctcgagggcgaggttcgtctgtgtcaacccaagagaagcctaatgct 269
           |||| ||||||||||||||||||||| || |||||  ||||||| ||||| || || | |
Sbjct: 198 acatgcagaatgcctcgagggcgaggctcttctgtcacaacccatgagaaacccaaagtt 257

                       
Query: 270 gatgcagcagtc 281
           |||| |||||||
Sbjct: 258 gatgaagcagtc 269
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                         
Query: 327   ttgctggggttgtttatacttttccttcatggatcctggtctgtttaccgtatgcagttt 386
             |||||||| ||||| ||  | |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 41434 ttgctgggattgttgatggtcttccttcatggatcctggtctgtttatcgttttcagttt 41375

                                                  
Query: 387   gcaaatcttcctttgccccttaatgctgagcaggctg 423
             ||||||||||||||||||||| ||||||| |||||||
Sbjct: 41374 gcaaatcttcctttgccccttgatgctgaacaggctg 41338



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 210   acatacagaatgcctcgagggcgaggttcgtctgtgtcaacccaagagaagcctaatgct 269
             |||| ||||||||||||||||||||| || |||||  ||||||| ||||| || || | |
Sbjct: 41551 acatgcagaatgcctcgagggcgaggctcttctgtcacaacccatgagaaacccaaagtt 41492

                         
Query: 270   gatgcagcagtc 281
             |||| |||||||
Sbjct: 41491 gatgaagcagtc 41480
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>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
              complete sequence
          Length = 139226

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                          
Query: 327    ttgctggggttgtttatacttttccttcatggatcctggtctgtttaccgtatgcagttt 386
              |||||||| ||||| ||  | |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 133369 ttgctgggattgttgatggtcttccttcatggatcctggtctgtttatcgttttcagttt 133310

                                                   
Query: 387    gcaaatcttcctttgccccttaatgctgagcaggctg 423
              ||||||||||||||||||||| ||||||| |||||||
Sbjct: 133309 gcaaatcttcctttgccccttgatgctgaacaggctg 133273



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                          
Query: 210    acatacagaatgcctcgagggcgaggttcgtctgtgtcaacccaagagaagcctaatgct 269
              |||| ||||||||||||||||||||| || |||||  ||||||| ||||| || || | |
Sbjct: 133486 acatgcagaatgcctcgagggcgaggctcttctgtcacaacccatgagaaacccaaagtt 133427

                          
Query: 270    gatgcagcagtc 281
              |||| |||||||
Sbjct: 133426 gatgaagcagtc 133415
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>ref|XM_473207.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2607

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                       
Query: 348 ttccttcatggatcctggtctgtttaccgtatgcagtttgcaaatcttcctttgcccctt 407
           |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 7   ttccttcatggatcctggtctgtttatcgttttcagtttgcaaatcttcctttgcccctt 66

                           
Query: 408 aatgctgagcaggctg 423
            ||||||| |||||||
Sbjct: 67  gatgctgaacaggctg 82
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>gb|AC151485.5| Monodelphis domestica, clone XX-214B11, complete sequence
          Length = 182310

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 116    ccagcctccctctgctcctccc 137
              ||||||||||||||||||||||
Sbjct: 144662 ccagcctccctctgctcctccc 144641
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>ref|XM_364860.1| Magnaporthe grisea 70-15 hypothetical protein (MG09705.4) partial
           mRNA
          Length = 966

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   cgggcgtctgctgctgctgct 26
           |||||||||||||||||||||
Sbjct: 490 cgggcgtctgctgctgctgct 470
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>emb|BX927144.24| Zebrafish DNA sequence from clone CH211-216K22 in linkage group 8,
            complete sequence
          Length = 168503

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 188  ctggcgtttcacttacatttaaacataca 216
            |||||||||||| |||||||||| |||||
Sbjct: 1900 ctggcgtttcacctacatttaaaaataca 1872
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>emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, complete sequence
          Length = 156637

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 188   ctggcgtttcacttacatttaaacataca 216
             |||||||||||| |||||||||| |||||
Sbjct: 68357 ctggcgtttcacctacatttaaaaataca 68385
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>emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 in linkage group 8,
           complete sequence
          Length = 231254

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 188 ctggcgtttcacttacatttaaacataca 216
           |||||||||||| |||||||||| |||||
Sbjct: 101 ctggcgtttcacctacatttaaaaataca 129
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>gb|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325N19 map 15q14, complete
             sequence
          Length = 197782

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cctccctctgctcctcccctc 140
             |||||||||||||||||||||
Sbjct: 15308 cctccctctgctcctcccctc 15288



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cctccctctgctcctcccctc 140
             |||||||||||||||||||||
Sbjct: 15291 cctccctctgctcctcccctc 15271
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>gb|AC023908.6|AC023908 Homo sapiens chromosome 15 clone RP11-37C7 map 15q14, complete sequence
          Length = 169670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cctccctctgctcctcccctc 140
             |||||||||||||||||||||
Sbjct: 90477 cctccctctgctcctcccctc 90457



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cctccctctgctcctcccctc 140
             |||||||||||||||||||||
Sbjct: 90460 cctccctctgctcctcccctc 90440
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>ref|XM_364064.1| Magnaporthe grisea 70-15 hypothetical protein (MG08909.4) partial
           mRNA
          Length = 2766

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   tgcgggcgtctgctgctgct 23
           ||||||||||||||||||||
Sbjct: 549 tgcgggcgtctgctgctgct 530
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>ref|XM_419772.1| PREDICTED: Gallus gallus similar to ST3A1 (LOC421740), mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tttgcaaatcttcctttgcc 403
           ||||||||||||||||||||
Sbjct: 363 tttgcaaatcttcctttgcc 382
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>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0035B22, complete sequence
          Length = 155788

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 120   cctccctctgctcctcccctcgccgtcg 147
             ||||||||| |||||| |||||||||||
Sbjct: 23908 cctccctctcctcctctcctcgccgtcg 23881
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cctcatcccctccccttcca 93
              ||||||||||||||||||||
Sbjct: 765625 cctcatcccctccccttcca 765606
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>gb|AC136965.2| Canis familiaris clone RP81-213K20, complete sequence
          Length = 157884

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    ctccctctgctcctcccctc 140
              ||||||||||||||||||||
Sbjct: 121677 ctccctctgctcctcccctc 121658
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>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete
             sequence
          Length = 177697

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cctgccgcctcatcccctcc 86
             ||||||||||||||||||||
Sbjct: 77305 cctgccgcctcatcccctcc 77324
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>gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228330

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agcctccctctgctcctccc 137
             ||||||||||||||||||||
Sbjct: 28901 agcctccctctgctcctccc 28920
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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    attcttcttccgctggcgtt 195
              ||||||||||||||||||||
Sbjct: 244157 attcttcttccgctggcgtt 244176
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>emb|CR318611.4| Zebrafish DNA sequence from clone DKEY-199F5 in linkage group 16,
             complete sequence
          Length = 162349

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 87050 cacttacatttaaaaatacagaat 87073
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>emb|BX248113.22| Zebrafish DNA sequence from clone CH211-132F21, complete sequence
          Length = 146026

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 18233 cacttacatttaaaaatacagaat 18210
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>ref|XM_695675.1| PREDICTED: Danio rerio similar to immunoglobulin superfamily,
          member 3 isoform 2 (LOC572021), mRNA
          Length = 2594

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  gggcgtctgctgctgctgct 26
          ||||||||||||||||||||
Sbjct: 19 gggcgtctgctgctgctgct 38
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>gb|AC157591.2| Mus musculus BAC clone RP23-311C13 from chromosome 9, complete sequence
          Length = 213461

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   acttacatttaaacatacag 217
             ||||||||||||||||||||
Sbjct: 94705 acttacatttaaacatacag 94724
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>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23,
             complete sequence
          Length = 171113

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 88909 cacttacatttaaaaatacagaat 88886
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>dbj|AK080448.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730015F23
           product:unclassifiable, full insert sequence
          Length = 821

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 74  cctcatcccctccccttccagact 97
           ||||||||| ||||||||||||||
Sbjct: 581 cctcatcccttccccttccagact 558
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 120      cctccctctgctcctcccctcgccgtcg 147
                ||||||||| |||||| |||||||||||
Sbjct: 21818474 cctccctctcctcctctcctcgccgtcg 21818447
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>emb|BX934942.1| Gallus gallus finished cDNA, clone ChEST151l24
          Length = 1382

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tttgcaaatcttcctttgcc 403
           ||||||||||||||||||||
Sbjct: 347 tttgcaaatcttcctttgcc 366
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>emb|BX323052.5| Zebrafish DNA sequence from clone CH211-234A12 in linkage group 24,
              complete sequence
          Length = 173982

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 197    cacttacatttaaacatacagaat 220
              |||||||||||||| |||||||||
Sbjct: 119847 cacttacatttaaaaatacagaat 119824
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>gb|AC090957.1| Homo sapiens chromosome 3 clone RP11-708D1 map 3p, complete sequence
          Length = 151677

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 330   ctggggttgtttatacttttcctt 353
             |||||||||||| |||||||||||
Sbjct: 63357 ctggggttgtttgtacttttcctt 63380
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>emb|BX248122.10| Zebrafish DNA sequence from clone CH211-214C20 in linkage group 4,
              complete sequence
          Length = 216208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 197    cacttacatttaaacatacagaat 220
              |||||||||||||| |||||||||
Sbjct: 213476 cacttacatttaaaaatacagaat 213453
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>emb|BX511214.8| Zebrafish DNA sequence from clone DKEY-191C11, complete sequence
          Length = 211331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 24293 cacttacatttaaaaatacagaat 24316
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>emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in linkage group 7,
             complete sequence
          Length = 144689

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 95163 cacttacatttaaaaatacagaat 95140
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>dbj|AK069699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027G01, full
           insert sequence
          Length = 2196

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 120 cctccctctgctcctcccctcgccgtcg 147
           ||||||||| |||||| |||||||||||
Sbjct: 100 cctccctctcctcctctcctcgccgtcg 127
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>emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18,
              complete sequence
          Length = 211922

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 378    atgcagtttgcaaatcttcctttg 401
              ||||||||||||||||||| ||||
Sbjct: 141769 atgcagtttgcaaatcttcatttg 141792
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>emb|AL714005.17| Zebrafish DNA sequence from clone BUSM1-13F19 in linkage group 9,
             complete sequence
          Length = 104829

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 43154 cacttacatttaaaaatacagaat 43177
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>emb|AL928944.8| Zebrafish DNA sequence from clone DKEYP-2H4 in linkage group 8,
            complete sequence
          Length = 55565

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 197  cacttacatttaaacatacagaat 220
            |||||||||||||| |||||||||
Sbjct: 7720 cacttacatttaaaaatacagaat 7743
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>tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for collagen, type VI, alpha
             3 and mlph gene for melanophilin
          Length = 212696

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ctccctctgctcctcccctc 140
             ||||||||||||||||||||
Sbjct: 36460 ctccctctgctcctcccctc 36479
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>emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 in linkage group 16,
              complete sequence
          Length = 166747

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    cacttacatttaaacatacagaat 220
              |||||||||||||| |||||||||
Sbjct: 127993 cacttacatttaaaaatacagaat 128016
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>emb|CT010507.11| Mouse DNA sequence from clone RP23-259G10 on chromosome 9, complete
            sequence
          Length = 213433

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  acttacatttaaacatacag 217
            ||||||||||||||||||||
Sbjct: 4484 acttacatttaaacatacag 4503
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>gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, complete sequence
          Length = 154779

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    cctcatcccctccccttccagact 97
             ||||||||| ||||||||||||||
Sbjct: 79232 cctcatcccttccccttccagact 79209
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>emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-280K24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190519

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   cacttacatttaaacataca 216
             ||||||||||||||||||||
Sbjct: 72141 cacttacatttaaacataca 72122
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>emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed Doberman
          Length = 197532

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ctccctctgctcctcccctc 140
             ||||||||||||||||||||
Sbjct: 36510 ctccctctgctcctcccctc 36529
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>emb|AL954724.9| Zebrafish DNA sequence from clone CH211-265P12, complete sequence
          Length = 136892

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   cacttacatttaaacatacagaat 220
             |||||||||||||| |||||||||
Sbjct: 76181 cacttacatttaaaaatacagaat 76158
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>emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chromosome 2, complete
              sequence
          Length = 201232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 66     gcctgccgcctcatcccctccccttcca 93
              ||||||| ||||| ||||||||||||||
Sbjct: 149951 gcctgcctcctcagcccctccccttcca 149924
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>gb|AC140321.3| Mus musculus BAC clone RP23-402K6 from 1, complete sequence
          Length = 215225

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    tgttgctggggttgtttatacttt 348
              ||||||||||| ||||||||||||
Sbjct: 124748 tgttgctggggctgtttatacttt 124725
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>gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosome 9, complete sequence
          Length = 225745

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    ctccctctgctcctcccctc 140
              ||||||||||||||||||||
Sbjct: 141614 ctccctctgctcctcccctc 141633
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>emb|AL669961.8| Mouse DNA sequence from clone RP23-43M17 on chromosome 2, complete
             sequence
          Length = 202937

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   gcaaatcttcctttgcccct 406
             ||||||||||||||||||||
Sbjct: 23242 gcaaatcttcctttgcccct 23223


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,648,820
Number of Sequences: 3902068
Number of extensions: 4648820
Number of successful extensions: 251565
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 251182
Number of HSP's gapped (non-prelim): 382
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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