>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11,
              complete sequence
          Length = 135993

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 59     cgacgccgcctccgccgtcccg 80
              ||||||||||||||||||||||
Sbjct: 124422 cgacgccgcctccgccgtcccg 124443

>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0024M06, complete sequence
          Length = 51144

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 59    cgacgccgcctccgccgtcccg 80
             ||||||||||||||||||||||
Sbjct: 50931 cgacgccgcctccgccgtcccg 50910

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 59      cgacgccgcctccgccgtcccg 80
               ||||||||||||||||||||||
Sbjct: 7665336 cgacgccgcctccgccgtcccg 7665357

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 59      cgacgccgcctccgccgtcccg 80
               ||||||||||||||||||||||
Sbjct: 7735423 cgacgccgcctccgccgtcccg 7735444

>ref|XM_479755.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  cctcctccccgtcgccacgcc 107
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484

>gb|AC146786.1| Pan troglodytes BAC clone RP43-34C4 from UL, complete sequence
          Length = 167484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agatccttatcagggactatt 388
             |||||||||||||||||||||
Sbjct: 25813 agatccttatcagggactatt 25793

>gb|AC004869.1| Homo sapiens PAC clone RP4-732C22 from 7, complete sequence
          Length = 159044

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agatccttatcagggactatt 388
             |||||||||||||||||||||
Sbjct: 19315 agatccttatcagggactatt 19295

>gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, complete sequence
          Length = 185117

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    ctaggaaagggaggtccaagt 458
              |||||||||||||||||||||
Sbjct: 167949 ctaggaaagggaggtccaagt 167969

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     cctcctccccgtcgccacgcc 107
              |||||||||||||||||||||
Sbjct: 691335 cctcctccccgtcgccacgcc 691315

>gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome 13, complete sequence
          Length = 175727

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   ctcaggacaacttggggtaca 325
             |||||||||||||||||||||
Sbjct: 19008 ctcaggacaacttggggtaca 18988

>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498H04
          Length = 151046

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     cctcctccccgtcgccacgcc 107
              |||||||||||||||||||||
Sbjct: 118713 cctcctccccgtcgccacgcc 118693

>dbj|AK069503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J18, full
           insert sequence
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  cctcctccccgtcgccacgcc 107
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484

>tpe|BN000646.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx117 gene
           for class III peroxidase 117 precursor, exon 1
          Length = 948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  cctcctccccgtcgccacgcc 107
           |||||||||||||||||||||
Sbjct: 441 cctcctccccgtcgccacgcc 421

>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence
          Length = 233864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 270    ttgggacatcagatgctcttg 290
              |||||||||||||||||||||
Sbjct: 155429 ttgggacatcagatgctcttg 155449

>emb|AL953906.6| Mouse DNA sequence from clone RP23-109E21 on chromosome 2, complete
              sequence
          Length = 172246

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 321    gtacagtttcagtgagaatca 341
              |||||||||||||||||||||
Sbjct: 156267 gtacagtttcagtgagaatca 156247

>ref|NM_130083.2| Arabidopsis thaliana GOS12 (GOLGI SNARE 12); SNARE binding
           AT2G45200 (GOS12) mRNA, complete cds
          Length = 1045

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 cagtttcagtgagaatcaga 343
           ||||||||||||||||||||
Sbjct: 26  cagtttcagtgagaatcaga 45

>ref|NM_117416.2| Arabidopsis thaliana HAK5; potassium ion transporter AT4G13420 (HAK5)
            mRNA, complete cds
          Length = 2623

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  cccgtgaaccgagtgacgtc 155
            ||||||||||||||||||||
Sbjct: 1866 cccgtgaaccgagtgacgtc 1885

>ref|NM_005599.2| Homo sapiens nescient helix loop helix 2 (NHLH2), mRNA
          Length = 2518

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 942 ccccgcggcgcaccccgccc 923

>gb|BT010589.1| Arabidopsis thaliana At4g13420 gene, complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  cccgtgaaccgagtgacgtc 155
            ||||||||||||||||||||
Sbjct: 1789 cccgtgaaccgagtgacgtc 1808

>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5'
              end of the CASQ2 gene for calsequestrin 2 (cardiac muscle),
              the NHLH2 gene for nescient helix loop helix 2, a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ccccgcggcgcaccccgccc 195
              ||||||||||||||||||||
Sbjct: 104473 ccccgcggcgcaccccgccc 104492

>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
          Length = 199634

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   cccgtgaaccgagtgacgtc 155
             ||||||||||||||||||||
Sbjct: 84348 cccgtgaaccgagtgacgtc 84329

>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
             (ESSA project)
          Length = 95432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   cccgtgaaccgagtgacgtc 155
             ||||||||||||||||||||
Sbjct: 68369 cccgtgaaccgagtgacgtc 68350

>gb|BC028729.1| Homo sapiens cDNA clone IMAGE:4811590
          Length = 4177

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 62  ccccgcggcgcaccccgccc 81

>gb|BC096361.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117068 IMAGE:40010652), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096359.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117066 IMAGE:40010648), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096362.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117069 IMAGE:40010653), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096360.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117067 IMAGE:40010649), complete cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>dbj|AK056621.1| Homo sapiens cDNA FLJ32059 fis, clone NTONG2001676, highly similar to
            HELIX-LOOP-HELIX PROTEIN 2
          Length = 2657

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  ccccgcggcgcaccccgccc 195
            ||||||||||||||||||||
Sbjct: 1403 ccccgcggcgcaccccgccc 1384

>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete
              sequence
          Length = 122928

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    cagtttcagtgagaatcaga 343
              ||||||||||||||||||||
Sbjct: 108179 cagtttcagtgagaatcaga 108198

>gb|AC073892.6| Homo sapiens BAC clone RP11-696G20 from 2, complete sequence
          Length = 91076

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 324   cagtttcagtgagaatcagaactt 347
             |||||||||| |||||||||||||
Sbjct: 66274 cagtttcagtcagaatcagaactt 66251

>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20,
             complete sequence
          Length = 153344

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atggaaaataagttgaatat 253
             ||||||||||||||||||||
Sbjct: 22771 atggaaaataagttgaatat 22790

>gb|AF129478.1| Arabidopsis thaliana cultivar Columbia K+ transporter HAK5 (HAK5)
            mRNA, complete cds
          Length = 2534

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  cccgtgaaccgagtgacgtc 155
            ||||||||||||||||||||
Sbjct: 1798 cccgtgaaccgagtgacgtc 1817

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      gggcgacgccgcctccgccg 75
               ||||||||||||||||||||
Sbjct: 2243281 gggcgacgccgcctccgccg 2243300

>gb|M97508.1|HUMHEN2A Homo sapiens helix-loop-helix protein (HEN2) gene, complete cds
          Length = 2156

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 883 ccccgcggcgcaccccgccc 864

>gb|M96740.1|HUMNSCL2A Human NSCL-2 gene sequence
          Length = 2519

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 961 ccccgcggcgcaccccgccc 942

>dbj|AB007959.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0490
          Length = 6075

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 ccccgcggcgcaccccgccc 195
           ||||||||||||||||||||
Sbjct: 101 ccccgcggcgcaccccgccc 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,140,771
Number of Sequences: 3902068
Number of extensions: 4140771
Number of successful extensions: 87583
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87377
Number of HSP's gapped (non-prelim): 206
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)