Clone Information

BLAST Search Result

Clone Name	bastl02c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY371488.1\| Zea mays clone BAC 276N12-123C01, partial sequence	202	7e-49
2	gb\|AF123535.1\| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh...	196	5e-47
3	gb\|AY691949.1\| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co...	196	5e-47
4	gb\|AF124045.1\| Sorghum bicolor BAC clone 110K5, partial sequence	194	2e-46
5	ref\|XM_469640.1\| Oryza sativa (japonica cultivar-group), mRNA	188	1e-44
6	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	188	1e-44
7	gb\|AY387483.1\| Oryza sativa (japonica cultivar-group) BAC OSJNBa...	188	1e-44
8	gb\|AC118133.4\| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom...	188	1e-44
9	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
10	ref\|XM_415892.1\| PREDICTED: Gallus gallus similar to ubiquitin s...	44	0.41
11	ref\|XM_749419.1\| Aspergillus fumigatus Af293 pyruvate decarboxyl...	42	1.6
12	gb\|AC092896.9\| Homo sapiens 3 BAC RP11-274J15 (Roswell Park Canc...	42	1.6
13	gb\|AC021733.12\| Homo sapiens chromosome 8, clone RP11-775B15, co...	42	1.6
14	gb\|AC090451.6\| Homo sapiens chromosome 8, clone RP11-318N11, com...	42	1.6
15	gb\|AC160402.8\| Mus musculus 10 BAC RP23-115L17 (Roswell Park Can...	42	1.6
16	gb\|DQ011467.1\| Cellana ornata isolate 021.O233CK cytochrome b ge...	40	6.4
17	gb\|DQ011466.1\| Cellana ornata isolate 020.O235CK cytochrome b ge...	40	6.4
18	gb\|DQ011465.1\| Cellana ornata isolate 019.O255HAW cytochrome b g...	40	6.4
19	gb\|DQ011464.1\| Cellana ornata isolate 018.O253HAW cytochrome b g...	40	6.4
20	gb\|DQ011463.1\| Cellana ornata isolate 017.O166WE cytochrome b ge...	40	6.4
21	gb\|DQ011462.1\| Cellana ornata isolate 016.O174EC cytochrome b ge...	40	6.4
22	gb\|DQ011461.1\| Cellana ornata isolate 015.O138FP cytochrome b ge...	40	6.4
23	gb\|DQ011460.1\| Cellana ornata isolate 014.O150SI cytochrome b ge...	40	6.4
24	gb\|DQ011459.1\| Cellana ornata isolate 013.O105MOT cytochrome b g...	40	6.4
25	gb\|DQ011458.1\| Cellana ornata isolate 012.O212TOK cytochrome b g...	40	6.4
26	gb\|DQ011457.1\| Cellana ornata isolate 011.O123MB cytochrome b ge...	40	6.4
27	gb\|DQ011456.1\| Cellana ornata isolate 010.O116CP cytochrome b ge...	40	6.4
28	gb\|DQ011455.1\| Cellana ornata isolate 09.O222NP cytochrome b gen...	40	6.4
29	gb\|DQ011454.1\| Cellana ornata isolate 08.O221NP cytochrome b gen...	40	6.4
30	gb\|DQ011453.1\| Cellana ornata isolate 07.O11P cytochrome b gene,...	40	6.4
31	gb\|DQ011452.1\| Cellana ornata isolate 06.O17CC cytochrome b gene...	40	6.4
32	gb\|DQ011450.1\| Cellana ornata isolate 04.O16CC cytochrome b gene...	40	6.4
33	gb\|DQ011448.1\| Cellana ornata isolate 02.O73LPB cytochrome b gen...	40	6.4
34	gb\|DQ011447.1\| Cellana ornata isolate 01.O2K cytochrome b gene, ...	40	6.4
35	gb\|AC145944.3\| Gallus gallus chromosome UNK clone CH261-22N7, co...	40	6.4
36	emb\|AL161626.20\| Human DNA sequence from clone RP11-214N16 on ch...	40	6.4
37	emb\|AL139351.37\| Human DNA sequence from clone RP11-321P16 on ch...	40	6.4
38	emb\|Z99110.2\|BSUB0007 Bacillus subtilis complete genome (section...	40	6.4
39	emb\|AL162459.2\|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BA...	40	6.4
40	emb\|AJ720973.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	6.4
41	gb\|AC087236.11\| Homo sapiens 12 BAC RP11-127B1 (Roswell Park Can...	40	6.4
42	gb\|AC153134.5\| Mus musculus BAC clone RP24-202N2 from chromosome...	40	6.4
43	emb\|AL157996.8\|CNS01RGH Human chromosome 14 DNA sequence BAC C-2...	40	6.4
44	emb\|AL049548.6\|HSDJ398G3 Human DNA sequence from clone RP3-398G3...	40	6.4

>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score =  202 bits (102), Expect = 7e-49
 Identities = 105/106 (99%)
 Strand = Plus / Plus

                                                                          
Query: 263    atataacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 322
              |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185634 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 185693

                                                            
Query: 323    ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaa 368
              ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185694 ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaa 185739



 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                          
Query: 48     cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
              |||||||||||| |||||||| || || |||||||| || || | ||| || |||||| |
Sbjct: 185343 cccaatttgcaggagtccaataccggacaatggaaacagggttcagctacgtctttacta 185402

                                                                          
Query: 108    caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
              ||| ||| |||| |  |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 185403 caagtgcctggaagagggccttatttctaagcagcacgatgaaaggtttcaggaaaagga 185462

                                                                          
Query: 168    aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
              || ||||||  |||  |||| |||||||||||||| ||||||||| ||| | ||||||||
Sbjct: 185463 agaccatggcaatccagttagcatggatgtccagcagctgcattcattgttcgatgttgc 185522

                             
Query: 228    acttcagaataatct 242
              | | ||||| |||||
Sbjct: 185523 agtacagaacaatct 185537



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 403    tctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgc 452
              ||||||||||| |||||||  |||| |||||||||  |||||||||||||
Sbjct: 185913 tctggattagaaacgatgagatctaggttatcccaactgcaaaagtttgc 185962

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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds
          Length = 160480

 Score =  196 bits (99), Expect = 5e-47
 Identities = 111/115 (96%)
 Strand = Plus / Plus

                                                                          
Query: 263    atataacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 322
              |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113163 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 113222

                                                                     
Query: 323    ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcat 377
              |||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct: 113223 ttttggatgaggtggtcatcaaggactggtgcaagaaggctgttaatgcgctcat 113277



 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                          
Query: 48     cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
              |||||| ||||| ||||||||  | || |||||||| || || | ||| || |||||| |
Sbjct: 112872 cccaatctgcaggagtccaatatcggacaatggaaatagggttcagctacgtctttacta 112931

                                                                          
Query: 108    caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
              ||| ||| |||| |  |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 112932 caagtgcctggaagcgggccttatttctaagcagcacgatgacaggtttcaggaaaagga 112991

                                                                          
Query: 168    aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
              || ||||||  ||| ||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct: 112992 agaccatggcaatcctgttagcatggatgtccagcggctgcattcattgtttgatgttgc 113051

                             
Query: 228    acttcagaataatct 242
              | | ||||| |||||
Sbjct: 113052 agtccagaacaatct 113066



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 405    tggattagagacgatgaagtctaagttatcccagatgcaaaagtttgc 452
              ||||||||| | |||||  ||||||||||||||  |||||||||||||
Sbjct: 113525 tggattagaaatgatgagatctaagttatcccaactgcaaaagtttgc 113572

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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score =  196 bits (99), Expect = 5e-47
 Identities = 111/115 (96%)
 Strand = Plus / Plus

                                                                         
Query: 263   atataacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 322
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96494 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 96553

                                                                    
Query: 323   ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcat 377
             |||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct: 96554 ttttggatgaggtggtcatcaaggactggtgcaagaaggctgttaatgcgctcat 96608



 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                         
Query: 48    cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
             |||||| ||||| ||||||||  | || |||||||| || || | ||| || |||||| |
Sbjct: 96203 cccaatctgcaggagtccaatatcggacaatggaaatagggttcagctacgtctttacta 96262

                                                                         
Query: 108   caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
             ||| ||| |||| |  |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 96263 caagtgcctggaagcgggccttatttctaagcagcacgatgacaggtttcaggaaaagga 96322

                                                                         
Query: 168   aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
             || ||||||  ||| ||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct: 96323 agaccatggcaatcctgttagcatggatgtccagcggctgcattcattgtttgatgttgc 96382

                            
Query: 228   acttcagaataatct 242
             | | ||||| |||||
Sbjct: 96383 agtccagaacaatct 96397



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 405   tggattagagacgatgaagtctaagttatcccagatgcaaaagtttgc 452
             ||||||||| | |||||  ||||||||||||||  |||||||||||||
Sbjct: 96856 tggattagaaatgatgagatctaagttatcccaactgcaaaagtttgc 96903

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>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence
          Length = 78195

 Score =  194 bits (98), Expect = 2e-46
 Identities = 104/106 (98%)
 Strand = Plus / Plus

                                                                         
Query: 263   atataacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttc 322
             |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 52330 atatcacagatgtttgtttggacgagaatgctgtgtcaagtgatccacttctggcttttc 52389

                                                           
Query: 323   ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaa 368
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52390 ttttggatgaggtggtcatcaaggactggtgcaagagggctgttaa 52435



 Score =  157 bits (79), Expect = 4e-35
 Identities = 166/195 (85%)
 Strand = Plus / Plus

                                                                         
Query: 48    cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
             |||||||||||| ||| |||| || || |||||||| || || ||||| || |||||| |
Sbjct: 52033 cccaatttgcaggagttcaataccggacaatggaaatagggttcggctacgtctttacta 52092

                                                                         
Query: 108   caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
             ||| |||||||| |  |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 52093 caagtgcttggaagcgggccttatttctaagcagcacgatgaaagatttcaggaaaagga 52152

                                                                         
Query: 168   aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
             || ||||||  ||| ||||| |||||||||||||||||||||||| ||| | ||||||||
Sbjct: 52153 agaccatggcaatcctgttagcatggatgtccagcggctgcattcattgttcgatgttgc 52212

                            
Query: 228   acttcagaataatct 242
             | | ||||| |||||
Sbjct: 52213 agtccagaacaatct 52227



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 403   tctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgc 452
             ||||||||||| |||||||  ||||||||||||||  ||||||| |||||
Sbjct: 52615 tctggattagaaacgatgagatctaagttatcccaactgcaaaattttgc 52664

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>ref|XM_469640.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1013

 Score =  188 bits (95), Expect = 1e-44
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                       
Query: 268 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 914

                                                                      
Query: 328 gatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcatatcagagat 386
           |||||||||||||||||||| |||||||||| ||||||||| || || ||||| |||||
Sbjct: 915 gatgaggtggtcatcaaggagtggtgcaagaaggctgttaatgcgctgatatctgagat 973



 Score =  172 bits (87), Expect = 7e-40
 Identities = 183/215 (85%)
 Strand = Plus / Plus

                                                                       
Query: 48  cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
           |||||||||||| || ||||| || || | ||| || || || || || ||||||||| |
Sbjct: 527 cccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttacta 586

                                                                       
Query: 108 caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
           ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 caagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 646

                                                                       
Query: 168 aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
           || |||| |||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||||
Sbjct: 647 agaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgc 706

                                              
Query: 228 acttcagaataatctggtttccctgatctgccact 262
            ||||| || ||| |||  ||| ||||||||||||
Sbjct: 707 ccttcaaaacaatttggcctccttgatctgccact 741

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 1e-44
 Identities = 113/119 (94%)
 Strand = Plus / Minus

                                                                            
Query: 268      acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 327
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29929613 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 29929554

                                                                           
Query: 328      gatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcatatcagagat 386
                |||||||||||||||||||| |||||||||| ||||||||| || || ||||| |||||
Sbjct: 29929553 gatgaggtggtcatcaaggagtggtgcaagaaggctgttaatgcgctgatatctgagat 29929495



 Score =  172 bits (87), Expect = 7e-40
 Identities = 183/215 (85%)
 Strand = Plus / Minus

                                                                            
Query: 48       cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
                |||||||||||| || ||||| || || | ||| || || || || || ||||||||| |
Sbjct: 29929941 cccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttacta 29929882

                                                                            
Query: 108      caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
                ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29929881 caagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 29929822

                                                                            
Query: 168      aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
                || |||| |||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||||
Sbjct: 29929821 agaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgc 29929762

                                                   
Query: 228      acttcagaataatctggtttccctgatctgccact 262
                 ||||| || ||| |||  ||| ||||||||||||
Sbjct: 29929761 ccttcaaaacaatttggcctccttgatctgccact 29929727



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 402      atctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgcagtgcag 459
                |||||||||||||| ||||| |||||||||||||||  |||| |||||||| ||||||
Sbjct: 29928990 atctggattagagatgatgatgtctaagttatcccaactgcagaagtttgctgtgcag 29928933

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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
             sequence
          Length = 159661

 Score =  188 bits (95), Expect = 1e-44
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 268   acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80993 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 81052

                                                                        
Query: 328   gatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcatatcagagat 386
             |||||||||||||||||||| |||||||||| ||||||||| || || ||||| |||||
Sbjct: 81053 gatgaggtggtcatcaaggagtggtgcaagaaggctgttaatgcgctgatatctgagat 81111



 Score =  172 bits (87), Expect = 7e-40
 Identities = 183/215 (85%)
 Strand = Plus / Plus

                                                                         
Query: 48    cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
             |||||||||||| || ||||| || || | ||| || || || || || ||||||||| |
Sbjct: 80665 cccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttacta 80724

                                                                         
Query: 108   caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
             ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80725 caagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 80784

                                                                         
Query: 168   aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
             || |||| |||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||||
Sbjct: 80785 agaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgc 80844

                                                
Query: 228   acttcagaataatctggtttccctgatctgccact 262
              ||||| || ||| |||  ||| ||||||||||||
Sbjct: 80845 ccttcaaaacaatttggcctccttgatctgccact 80879



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 402   atctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgcagtgcag 459
             |||||||||||||| ||||| |||||||||||||||  |||| |||||||| ||||||
Sbjct: 81616 atctggattagagatgatgatgtctaagttatcccaactgcagaagtttgctgtgcag 81673

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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score =  188 bits (95), Expect = 1e-44
 Identities = 113/119 (94%)
 Strand = Plus / Minus

                                                                         
Query: 268   acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95554 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 95495

                                                                        
Query: 328   gatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcatatcagagat 386
             |||||||||||||||||||| |||||||||| ||||||||| || || ||||| |||||
Sbjct: 95494 gatgaggtggtcatcaaggagtggtgcaagaaggctgttaatgcgctgatatctgagat 95436



 Score =  172 bits (87), Expect = 7e-40
 Identities = 183/215 (85%)
 Strand = Plus / Minus

                                                                         
Query: 48    cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
             |||||||||||| || ||||| || || | ||| || || || || || ||||||||| |
Sbjct: 95882 cccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttacta 95823

                                                                         
Query: 108   caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
             ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95822 caagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 95763

                                                                         
Query: 168   aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
             || |||| |||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||||
Sbjct: 95762 agaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgc 95703

                                                
Query: 228   acttcagaataatctggtttccctgatctgccact 262
              ||||| || ||| |||  ||| ||||||||||||
Sbjct: 95702 ccttcaaaacaatttggcctccttgatctgccact 95668



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 402   atctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgcagtgcag 459
             |||||||||||||| ||||| |||||||||||||||  |||| |||||||| ||||||
Sbjct: 94931 atctggattagagatgatgatgtctaagttatcccaactgcagaagtttgctgtgcag 94874

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 1e-44
 Identities = 113/119 (94%)
 Strand = Plus / Minus

                                                                            
Query: 268      acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 327
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30021035 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttttcttttg 30020976

                                                                           
Query: 328      gatgaggtggtcatcaaggactggtgcaagagggctgttaaggcactcatatcagagat 386
                |||||||||||||||||||| |||||||||| ||||||||| || || ||||| |||||
Sbjct: 30020975 gatgaggtggtcatcaaggagtggtgcaagaaggctgttaatgcgctgatatctgagat 30020917



 Score =  172 bits (87), Expect = 7e-40
 Identities = 183/215 (85%)
 Strand = Plus / Minus

                                                                            
Query: 48       cccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttacca 107
                |||||||||||| || ||||| || || | ||| || || || || || ||||||||| |
Sbjct: 30021363 cccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttacta 30021304

                                                                            
Query: 108      caaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 167
                ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30021303 caagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaagga 30021244

                                                                            
Query: 168      aggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgcttgatgttgc 227
                || |||| |||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||||
Sbjct: 30021243 agaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgc 30021184

                                                   
Query: 228      acttcagaataatctggtttccctgatctgccact 262
                 ||||| || ||| |||  ||| ||||||||||||
Sbjct: 30021183 ccttcaaaacaatttggcctccttgatctgccact 30021149



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 402      atctggattagagacgatgaagtctaagttatcccagatgcaaaagtttgcagtgcag 459
                |||||||||||||| ||||| |||||||||||||||  |||| |||||||| ||||||
Sbjct: 30020412 atctggattagagatgatgatgtctaagttatcccaactgcagaagtttgctgtgcag 30020355

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>ref|XM_415892.1| PREDICTED: Gallus gallus similar to ubiquitin specific protease 32
            (LOC417646), mRNA
          Length = 5148

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 310  cttctggcttttcttttggatg 331
            ||||||||||||||||||||||
Sbjct: 2983 cttctggcttttcttttggatg 3004

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>ref|XM_749419.1| Aspergillus fumigatus Af293 pyruvate decarboxylase PdcA (Afu3g11070)
            partial mRNA
          Length = 1710

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 433  tcccagatgcaaaagtttgcagtgc 457
            |||||||||| ||||||||||||||
Sbjct: 1214 tcccagatgccaaagtttgcagtgc 1190

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>gb|AC092896.9| Homo sapiens 3 BAC RP11-274J15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 170330

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  ttcaggaaaaggaaggccatg 175
            |||||||||||||||||||||
Sbjct: 5623 ttcaggaaaaggaaggccatg 5603

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>gb|AC021733.12| Homo sapiens chromosome 8, clone RP11-775B15, complete sequence
          Length = 158341

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    ctgataatggaaaaagagtgc 91
             |||||||||||||||||||||
Sbjct: 30613 ctgataatggaaaaagagtgc 30593

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>gb|AC090451.6| Homo sapiens chromosome 8, clone RP11-318N11, complete sequence
          Length = 160671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     ctgataatggaaaaagagtgc 91
              |||||||||||||||||||||
Sbjct: 142421 ctgataatggaaaaagagtgc 142401

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>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224566

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    tcaagtgatccacttctggct 318
              |||||||||||||||||||||
Sbjct: 150831 tcaagtgatccacttctggct 150851

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>gb|DQ011467.1| Cellana ornata isolate 021.O233CK cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011466.1| Cellana ornata isolate 020.O235CK cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011465.1| Cellana ornata isolate 019.O255HAW cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011464.1| Cellana ornata isolate 018.O253HAW cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011463.1| Cellana ornata isolate 017.O166WE cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011462.1| Cellana ornata isolate 016.O174EC cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011461.1| Cellana ornata isolate 015.O138FP cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011460.1| Cellana ornata isolate 014.O150SI cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011459.1| Cellana ornata isolate 013.O105MOT cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011458.1| Cellana ornata isolate 012.O212TOK cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011457.1| Cellana ornata isolate 011.O123MB cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011456.1| Cellana ornata isolate 010.O116CP cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011455.1| Cellana ornata isolate 09.O222NP cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011454.1| Cellana ornata isolate 08.O221NP cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011453.1| Cellana ornata isolate 07.O11P cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011452.1| Cellana ornata isolate 06.O17CC cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011450.1| Cellana ornata isolate 04.O16CC cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011448.1| Cellana ornata isolate 02.O73LPB cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|DQ011447.1| Cellana ornata isolate 01.O2K cytochrome b gene, partial cds;
           mitochondrial
          Length = 328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 ggatgagaatgctgtgtcaa 301
           ||||||||||||||||||||
Sbjct: 117 ggatgagaatgctgtgtcaa 98

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>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   cccagatgcaaaagtttgca 453
             ||||||||||||||||||||
Sbjct: 87127 cccagatgcaaaagtttgca 87108

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>emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on chromosome 9 Contains the 3'
              end of the GCNT1 gene for glucosaminyl (N-acetyl)
              transferase 1 core 2
              (beta-1,6-N-acetylglucosaminyltransferase), a
              peptidylprolyl isomerase A (cyclophilin A) (PPIA)
              pseudogene and the 3' end of the KIAA0376 gene, complete
              sequence
          Length = 183858

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      gcctttggcagacagattgcttgc 29
              ||||||||||| ||||||||||||
Sbjct: 121335 gcctttggcaggcagattgcttgc 121312

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>emb|AL139351.37| Human DNA sequence from clone RP11-321P16 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 97512

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   acttctggcttttcttttgg 328
             ||||||||||||||||||||
Sbjct: 44124 acttctggcttttcttttgg 44105

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>emb|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to
             1410982
          Length = 201241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    cctgataatggaaaaagagtgcgg 93
             |||||| |||||||||||||||||
Sbjct: 68600 cctgatgatggaaaaagagtgcgg 68623

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>emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2
          Length = 111338

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    aattcctgataatggaaaaa 85
             ||||||||||||||||||||
Sbjct: 58046 aattcctgataatggaaaaa 58065

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>emb|AJ720973.1| Gallus gallus mRNA for hypothetical protein, clone 31i7
          Length = 3174

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  tgctgtgtcaagtgatccac 310
            ||||||||||||||||||||
Sbjct: 1329 tgctgtgtcaagtgatccac 1310

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>gb|AC087236.11| Homo sapiens 12 BAC RP11-127B1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 61010

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   ggcatgatttataaatctgg 407
             ||||||||||||||||||||
Sbjct: 55156 ggcatgatttataaatctgg 55137

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>gb|AC153134.5| Mus musculus BAC clone RP24-202N2 from chromosome 13, complete sequence
          Length = 177669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 335    tggtcatcaaggactggtgcaaga 358
              |||||||||||||||||| |||||
Sbjct: 128194 tggtcatcaaggactggtacaaga 128171

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>emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2525P14 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209242

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    ttataaatctggattagaga 415
              ||||||||||||||||||||
Sbjct: 140359 ttataaatctggattagaga 140340

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>emb|AL049548.6|HSDJ398G3 Human DNA sequence from clone RP3-398G3 on chromosome 6q25.1-25.3
             Contains the 3' part of the gene for a novel protein
             containing CH domains (contains KIAA1756, FLJ30878 and the
             likely ortholog of rat CPG2), four novel genes and the 5'
             part of a novel gene, complete sequence
          Length = 86478

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   agttatcccagatgcaaaag 447
             ||||||||||||||||||||
Sbjct: 34543 agttatcccagatgcaaaag 34562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,108,248
Number of Sequences: 3902068
Number of extensions: 5108248
Number of successful extensions: 94417
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94282
Number of HSP's gapped (non-prelim): 135
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result