ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AQP_CICVR (Q23808) Aquaporin AQPcic 32 0.71
2AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-gl... 30 3.5
3HAL4_SCHPO (O14019) Serine/threonine-protein kinase hal4 (EC 2.7... 30 4.6
4GLMM_LISMO (Q8Y5E6) Phosphoglucosamine mutase (EC 5.4.2.10) 30 4.6
5GLMM_LISMF (Q71XP5) Phosphoglucosamine mutase (EC 5.4.2.10) 30 4.6
6GLMM_LISIN (Q929Q1) Phosphoglucosamine mutase (EC 5.4.2.10) 30 4.6
7ZN575_MACFA (Q9GM03) Zinc finger protein 575 29 6.0
8YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in... 29 7.8
9DMP1_MOUSE (O55188) Dentin matrix acidic phosphoprotein 1 precur... 29 7.8
10GPRS_DROME (O61366) Serine-enriched protein 29 7.8

>AQP_CICVR (Q23808) Aquaporin AQPcic|
          Length = 255

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = -3

Query: 250 VVRIGVFRGVLIAVRFFLHLLGQLPECF---ARTAGLIVVGHVSL*RTSYY----CSSAR 92
           VVRI +  G +IA    +  +G +  C    A T GL+V GH+S+ +  +Y    C  A 
Sbjct: 58  VVRIALTFGFIIAT--MVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAI 115

Query: 91  AADAHLPLI 65
           A  A L +I
Sbjct: 116 AGSAILKVI 124



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>AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 685

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 484 ENAPELNRVPL-DYFFVHRWIPVGVHFNKFLL 392
           E A E++  PL ++FF H   P+ VHF+ FLL
Sbjct: 24  ERAYEMSYKPLINFFFKHPDFPINVHFSGFLL 55



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>HAL4_SCHPO (O14019) Serine/threonine-protein kinase hal4 (EC 2.7.11.1)|
           (Halotolerence protein 4)
          Length = 636

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  SSTGRGAVVASSSERNMAHNDEAGGSGKA 172
           S TGRGA VA++ E N     E GG+  +
Sbjct: 224 SRTGRGAAVANTEETNSTGGSETGGAANS 252



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>GLMM_LISMO (Q8Y5E6) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 450

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 95  GRGAVVASSSERNMAHNDEAGGSGKAFWELSQEMEEEPHRYEDAAEDTDPDYTTPSGVG 271
           G  A V  S+  N   ++     G   ++LS + EEE  +  D AEDT P    PSG G
Sbjct: 91  GASASVMISASHNPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLP---RPSGEG 146



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>GLMM_LISMF (Q71XP5) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 450

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 95  GRGAVVASSSERNMAHNDEAGGSGKAFWELSQEMEEEPHRYEDAAEDTDPDYTTPSGVG 271
           G  A V  S+  N   ++     G   ++LS + EEE  +  D AEDT P    PSG G
Sbjct: 91  GASASVMISASHNPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLP---RPSGEG 146



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>GLMM_LISIN (Q929Q1) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 450

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 95  GRGAVVASSSERNMAHNDEAGGSGKAFWELSQEMEEEPHRYEDAAEDTDPDYTTPSGVG 271
           G  A V  S+  N   ++     G   ++LS + EEE  +  D AEDT P    PSG G
Sbjct: 91  GASASVMISASHNPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLP---RPSGEG 146



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>ZN575_MACFA (Q9GM03) Zinc finger protein 575|
          Length = 260

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
 Frame = -2

Query: 230 PRRPHSGEVLPPS---PGTA--------PRMLCPNRRPHRCGPC 132
           P  PH G +  PS   PG          PR   P +RPHRC  C
Sbjct: 40  PPAPHQGPLQKPSQSAPGPTASASAPPRPRRRPPPQRPHRCPDC 83



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>YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in chromosome II|
          Length = 610

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 74  KMSISSTGRGAVVASSSERNMAHNDEAGGSGKAFWELSQEMEEEPHRYEDAAEDTDPD 247
           +++ SS G G+  +  S+  +  +D+    G    +  +E  +EP  Y ++ ED+D +
Sbjct: 428 ELTTSSAGAGSARSRGSDSVVEIDDDDDNDGVDVDDDDREDSDEPRTYSNSEEDSDEE 485



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>DMP1_MOUSE (O55188) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1) (AG1)
          Length = 503

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/90 (23%), Positives = 31/90 (34%)
 Frame = +2

Query: 98  RGAVVASSSERNMAHNDEAGGSGKAFWELSQEMEEEPHRYEDAAEDTDPDYTTPSGVGDY 277
           RG +  S+S    + + E   S +     SQE   E    ED+ E  DP   +    G+ 
Sbjct: 274 RGELTDSNSRETQSDSTEDTASKEESRSESQEDTAESQSQEDSPEGQDPSSESSEEAGEP 333

Query: 278 XXXXXXXXXXXXXXXXRTHGSESKSQRKDQ 367
                           R    ++ SQ  DQ
Sbjct: 334 SQESSSESQEGVTSESRGDNPDNTSQTGDQ 363



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>GPRS_DROME (O61366) Serine-enriched protein|
          Length = 1302

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 245 QDRCLPRRPHSGEVLPPSPGTAPRMLCPNRRPHRCGPCFAL 123
           Q R  P  P SG   P  P T+P +  P   P R  P F++
Sbjct: 461 QGRRSPLFPSSGLRSPNDPMTSPTVRSPTGEPRRSSPTFSV 501


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,768,790
Number of Sequences: 219361
Number of extensions: 1202547
Number of successful extensions: 3961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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