ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466650.1| Oryza sativa (japonica cultivar-group), mRNA 333 3e-88
2dbj|AK073527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 3e-88
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
4dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
5dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
7dbj|AK106832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
9emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.39
10gb|AC101807.12| Mus musculus chromosome 18, clone RP24-251J22, c... 42 1.5
11ref|XM_516408.1| PREDICTED: Pan troglodytes similar to brain spe... 42 1.5
12gb|BC057390.1| Homo sapiens Ras-induced senescence 1, mRNA (cDNA... 42 1.5
13ref|NM_015444.1| Homo sapiens Ras-induced senescence 1 (RIS1), mRNA 42 1.5
14emb|CR621614.1| full-length cDNA clone CS0DN002YN22 of Adult bra... 42 1.5
15emb|CR615050.1| full-length cDNA clone CS0DF008YL24 of Fetal bra... 42 1.5
16emb|CR593631.1| full-length cDNA clone CS0DF009YM08 of Fetal bra... 42 1.5
17emb|CR591255.1| full-length cDNA clone CS0DF001YF09 of Fetal bra... 42 1.5
18gb|AC006515.7| Homo sapiens 3p22-7 PAC RPCI5-1053D16 (Roswell Pa... 42 1.5
19gb|AC010170.3| Homo sapiens 3p22-21.3 BAC RPCI11-487J21 (Roswell... 42 1.5
20gb|AF438313.1| Homo sapiens Ras-induced senescence 1 (RIS1) mRNA... 42 1.5
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.1
22gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
23ref|XM_649289.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.1
24emb|AL512292.5| Human DNA sequence from clone RP11-292O17 on chr... 40 6.1
25gb|AC099780.2| Homo sapiens chromosome 3 clone RP11-769M23, comp... 40 6.1
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
27emb|AL929023.3| Zebrafish DNA sequence from clone DKEY-98G12 in ... 40 6.1
28gb|AF152364.1|AF152364 Homo sapiens constitutive fragile region ... 40 6.1
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1 
>ref|XM_466650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3202

 Score =  333 bits (168), Expect = 3e-88
 Identities = 270/304 (88%)
 Strand = Plus / Plus

                                                                       
Query: 136 gaatccccgccgcccccggcgccgcgacctcaacgcactggatccgtatttagaggagtc 195
           ||||||||||||| | |||||||||||||||||||||||||||||   |||||| |||||
Sbjct: 358 gaatccccgccgcgcgcggcgccgcgacctcaacgcactggatcccagtttagaagagtc 417

                                                                       
Query: 196 tgatggacaggacattggcattccagaagttggcatggtgttcaataaccacatggaggt 255
           ||||||| |||| |||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 418 tgatggagaggatattggtgttccagaagttggcatggtgttcaataaccacacggaggt 477

                                                                       
Query: 256 caaccggttctaccgtaggtatgcccgtcgtgttggttttggtgtctcagttaggaggtc 315
           |||||| |||||||| |||||||| || |||||||| ||||| || || |||||||||||
Sbjct: 478 caaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtctgttaggaggtc 537

                                                                       
Query: 316 ctcgttctcacaagaaggcacctgcttatatctcgagctgatgtgctgtaaaggagggcg 375
           ||| || |||||||| ||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 538 ctcattttcacaagagggcacctgcttatatctggagctcatgtgctgcaaaggagggcg 597

                                                                       
Query: 376 tccacgttatgagcctaaattcaggaagcgggcctcatcaaccaccaattgcccagccag 435
            |||||||||||||| || |||||||| |||||||| |||||||| || || ||||||| 
Sbjct: 598 gccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaactgtccagccaa 657

               
Query: 436 gatc 439
           ||||
Sbjct: 658 gatc 661
to top
>dbj|AK073527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046M02, full
           insert sequence
          Length = 3202

 Score =  333 bits (168), Expect = 3e-88
 Identities = 270/304 (88%)
 Strand = Plus / Plus

                                                                       
Query: 136 gaatccccgccgcccccggcgccgcgacctcaacgcactggatccgtatttagaggagtc 195
           ||||||||||||| | |||||||||||||||||||||||||||||   |||||| |||||
Sbjct: 358 gaatccccgccgcgcgcggcgccgcgacctcaacgcactggatcccagtttagaagagtc 417

                                                                       
Query: 196 tgatggacaggacattggcattccagaagttggcatggtgttcaataaccacatggaggt 255
           ||||||| |||| |||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 418 tgatggagaggatattggtgttccagaagttggcatggtgttcaataaccacacggaggt 477

                                                                       
Query: 256 caaccggttctaccgtaggtatgcccgtcgtgttggttttggtgtctcagttaggaggtc 315
           |||||| |||||||| |||||||| || |||||||| ||||| || || |||||||||||
Sbjct: 478 caaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtctgttaggaggtc 537

                                                                       
Query: 316 ctcgttctcacaagaaggcacctgcttatatctcgagctgatgtgctgtaaaggagggcg 375
           ||| || |||||||| ||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 538 ctcattttcacaagagggcacctgcttatatctggagctcatgtgctgcaaaggagggcg 597

                                                                       
Query: 376 tccacgttatgagcctaaattcaggaagcgggcctcatcaaccaccaattgcccagccag 435
            |||||||||||||| || |||||||| |||||||| |||||||| || || ||||||| 
Sbjct: 598 gccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaactgtccagccaa 657

               
Query: 436 gatc 439
           ||||
Sbjct: 658 gatc 661
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  278 bits (140), Expect = 1e-71
 Identities = 227/256 (88%)
 Strand = Plus / Plus

                                                                            
Query: 184      tttagaggagtctgatggacaggacattggcattccagaagttggcatggtgttcaataa 243
                |||||| |||||||||||| |||| |||||  ||||||||||||||||||||||||||||
Sbjct: 23880539 tttagaagagtctgatggagaggatattggtgttccagaagttggcatggtgttcaataa 23880598

                                                                            
Query: 244      ccacatggaggtcaaccggttctaccgtaggtatgcccgtcgtgttggttttggtgtctc 303
                ||||| |||||||||||| |||||||| |||||||| || |||||||| ||||| || ||
Sbjct: 23880599 ccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtc 23880658

                                                                            
Query: 304      agttaggaggtcctcgttctcacaagaaggcacctgcttatatctcgagctgatgtgctg 363
                 |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 23880659 tgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctg 23880718

                                                                            
Query: 364      taaaggagggcgtccacgttatgagcctaaattcaggaagcgggcctcatcaaccaccaa 423
                 ||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||
Sbjct: 23880719 caaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaa 23880778

                                
Query: 424      ttgcccagccaggatc 439
                 || ||||||| ||||
Sbjct: 23880779 ctgtccagccaagatc 23880794



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 136      gaatccccgccgcccccggcgccgcgacctcaacgcactgg 176
                ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 23879716 gaatccccgccgcgcgcggcgccgcgacctcaacgcactgg 23879756
to top
>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  278 bits (140), Expect = 1e-71
 Identities = 227/256 (88%)
 Strand = Plus / Plus

                                                                          
Query: 184    tttagaggagtctgatggacaggacattggcattccagaagttggcatggtgttcaataa 243
              |||||| |||||||||||| |||| |||||  ||||||||||||||||||||||||||||
Sbjct: 102205 tttagaagagtctgatggagaggatattggtgttccagaagttggcatggtgttcaataa 102264

                                                                          
Query: 244    ccacatggaggtcaaccggttctaccgtaggtatgcccgtcgtgttggttttggtgtctc 303
              ||||| |||||||||||| |||||||| |||||||| || |||||||| ||||| || ||
Sbjct: 102265 ccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtc 102324

                                                                          
Query: 304    agttaggaggtcctcgttctcacaagaaggcacctgcttatatctcgagctgatgtgctg 363
               |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 102325 tgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctg 102384

                                                                          
Query: 364    taaaggagggcgtccacgttatgagcctaaattcaggaagcgggcctcatcaaccaccaa 423
               ||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||
Sbjct: 102385 caaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaa 102444

                              
Query: 424    ttgcccagccaggatc 439
               || ||||||| ||||
Sbjct: 102445 ctgtccagccaagatc 102460



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                       
Query: 136    gaatccccgccgcccccggcgccgcgacctcaacgcactgg 176
              ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 101382 gaatccccgccgcgcgcggcgccgcgacctcaacgcactgg 101422
to top
>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  278 bits (140), Expect = 1e-71
 Identities = 227/256 (88%)
 Strand = Plus / Plus

                                                                         
Query: 184   tttagaggagtctgatggacaggacattggcattccagaagttggcatggtgttcaataa 243
             |||||| |||||||||||| |||| |||||  ||||||||||||||||||||||||||||
Sbjct: 14503 tttagaagagtctgatggagaggatattggtgttccagaagttggcatggtgttcaataa 14562

                                                                         
Query: 244   ccacatggaggtcaaccggttctaccgtaggtatgcccgtcgtgttggttttggtgtctc 303
             ||||| |||||||||||| |||||||| |||||||| || |||||||| ||||| || ||
Sbjct: 14563 ccacacggaggtcaaccgattctaccgaaggtatgctcgccgtgttggctttggggtgtc 14622

                                                                         
Query: 304   agttaggaggtcctcgttctcacaagaaggcacctgcttatatctcgagctgatgtgctg 363
              |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 14623 tgttaggaggtcctcattttcacaagagggcacctgcttatatctggagctcatgtgctg 14682

                                                                         
Query: 364   taaaggagggcgtccacgttatgagcctaaattcaggaagcgggcctcatcaaccaccaa 423
              ||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||
Sbjct: 14683 caaaggagggcggccacgttatgagccaaagttcaggaaacgggcctcttcaaccactaa 14742

                             
Query: 424   ttgcccagccaggatc 439
              || ||||||| ||||
Sbjct: 14743 ctgtccagccaagatc 14758



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 136   gaatccccgccgcccccggcgccgcgacctcaacgcactgg 176
             ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 13680 gaatccccgccgcgcgcggcgccgcgacctcaacgcactgg 13720
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 75       cgacctcgccggcggtgggctc 96
                ||||||||||||||||||||||
Sbjct: 18619078 cgacctcgccggcggtgggctc 18619099
to top
>dbj|AK106832.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F10, full
            insert sequence
          Length = 2372

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 75   cgacctcgccggcggtgggctc 96
            ||||||||||||||||||||||
Sbjct: 1210 cgacctcgccggcggtgggctc 1231
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 75       cgacctcgccggcggtgggctc 96
                ||||||||||||||||||||||
Sbjct: 18545304 cgacctcgccggcggtgggctc 18545325
to top
>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 180599

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 75    cgacctcgccggcggtgggctc 96
             ||||||||||||||||||||||
Sbjct: 52530 cgacctcgccggcggtgggctc 52551
to top
>gb|AC101807.12| Mus musculus chromosome 18, clone RP24-251J22, complete sequence
          Length = 171409

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 51    ccccacccgctcccaaaccctagcc 75
             |||||||||||||| ||||||||||
Sbjct: 67413 ccccacccgctccccaaccctagcc 67389
to top
>ref|XM_516408.1| PREDICTED: Pan troglodytes similar to brain specific binding protein;
            BINP receptor (LOC460316), mRNA
          Length = 3103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 139  tccccgccgcccccggcgccg 159
            |||||||||||||||||||||
Sbjct: 1613 tccccgccgcccccggcgccg 1593
to top
>gb|BC057390.1| Homo sapiens Ras-induced senescence 1, mRNA (cDNA clone MGC:57838
           IMAGE:6175193), complete cds
          Length = 1798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 38  tccccgccgcccccggcgccg 18
to top
>ref|NM_015444.1| Homo sapiens Ras-induced senescence 1 (RIS1), mRNA
          Length = 1797

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 22  tccccgccgcccccggcgccg 2
to top
>emb|CR621614.1| full-length cDNA clone CS0DN002YN22 of Adult brain of Homo sapiens
           (human)
          Length = 1781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 58  tccccgccgcccccggcgccg 38
to top
>emb|CR615050.1| full-length cDNA clone CS0DF008YL24 of Fetal brain of Homo sapiens
           (human)
          Length = 1804

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 38  tccccgccgcccccggcgccg 18
to top
>emb|CR593631.1| full-length cDNA clone CS0DF009YM08 of Fetal brain of Homo sapiens
           (human)
          Length = 1796

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 38  tccccgccgcccccggcgccg 18
to top
>emb|CR591255.1| full-length cDNA clone CS0DF001YF09 of Fetal brain of Homo sapiens
           (human)
          Length = 1798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 58  tccccgccgcccccggcgccg 38
to top
>gb|AC006515.7| Homo sapiens 3p22-7 PAC RPCI5-1053D16 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 223542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 139   tccccgccgcccccggcgccg 159
             |||||||||||||||||||||
Sbjct: 28072 tccccgccgcccccggcgccg 28092
to top
>gb|AC010170.3| Homo sapiens 3p22-21.3 BAC RPCI11-487J21 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 173977

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    tccccgccgcccccggcgccg 159
              |||||||||||||||||||||
Sbjct: 101327 tccccgccgcccccggcgccg 101347
to top
>gb|AF438313.1| Homo sapiens Ras-induced senescence 1 (RIS1) mRNA, complete cds
          Length = 1797

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 tccccgccgcccccggcgccg 159
           |||||||||||||||||||||
Sbjct: 22  tccccgccgcccccggcgccg 2
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     cccgccgcccccggcgccgc 160
               ||||||||||||||||||||
Sbjct: 2248867 cccgccgcccccggcgccgc 2248886
to top
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    ctcccaaaccctagccgacctcgc 83
             |||||||||||||||| |||||||
Sbjct: 79347 ctcccaaaccctagcccacctcgc 79370
to top
>ref|XM_649289.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (55.t00016)
           partial mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caataaccacatggaggtca 257
           ||||||||||||||||||||
Sbjct: 203 caataaccacatggaggtca 222
to top
>emb|AL512292.5| Human DNA sequence from clone RP11-292O17 on chromosome 1 Contains a
             ribosomal protein L31 (RPL31) pseudogene, complete
             sequence
          Length = 135389

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gtgttcaataaccacatgga 252
             ||||||||||||||||||||
Sbjct: 33998 gtgttcaataaccacatgga 33979
to top
>gb|AC099780.2| Homo sapiens chromosome 3 clone RP11-769M23, complete sequence
          Length = 193793

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     ttcatttgtcaccaaaattt 36
              ||||||||||||||||||||
Sbjct: 147253 ttcatttgtcaccaaaattt 147234
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 60       ctcccaaaccctagccgacctcgc 83
                |||||||||||||||| |||||||
Sbjct: 18500032 ctcccaaaccctagcccacctcgc 18500055
to top
>emb|AL929023.3| Zebrafish DNA sequence from clone DKEY-98G12 in linkage group 17,
              complete sequence
          Length = 198736

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     aattcatttgtcaccaaaat 34
              ||||||||||||||||||||
Sbjct: 190262 aattcatttgtcaccaaaat 190243
to top
>gb|AF152364.1|AF152364 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 170452

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ttcatttgtcaccaaaattt 36
             ||||||||||||||||||||
Sbjct: 63770 ttcatttgtcaccaaaattt 63751
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 60       ctcccaaaccctagccgacctcgc 83
                |||||||||||||||| |||||||
Sbjct: 18659433 ctcccaaaccctagcccacctcgc 18659456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,232,184
Number of Sequences: 3902068
Number of extensions: 3232184
Number of successful extensions: 65007
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64741
Number of HSP's gapped (non-prelim): 266
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top