ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl02b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192248.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 220 tggcggcggcggctctccttccc 198
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 26142369 tggcggcggcggctctccttccc 26142391
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 25606802 tggcggcggcggctctccttccc 25606824 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggcggcggctctccttccc 80 |||||||||||||||||||| Sbjct: 26129567 cggcggcggctctccttccc 26129586
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 53608 tggcggcggcggctctccttccc 53630
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 134405 tggcggcggcggctctccttccc 134427
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0048B08 Length = 146874 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 39196 tggcggcggcggctctccttccc 39218
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 tggcggcggcggctctccttccc 80 ||||||||||||||||||||||| Sbjct: 149815 tggcggcggcggctctccttccc 149837
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 ggcggcggcggctctccttccc 80 |||||||||||||||||||||| Sbjct: 22062383 ggcggcggcggctctccttccc 22062362
>gb|AC073215.5| Homo sapiens BAC clone RP11-501L9 from 2, complete sequence Length = 105392 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 ttctccccaaagaccgagcgtggtga 230 |||||||||||||||||| ||||||| Sbjct: 75050 ttctccccaaagaccgagggtggtga 75025
>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0612G07 Length = 182548 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 ggcggcggcggctctccttccc 80 |||||||||||||||||||||| Sbjct: 100256 ggcggcggcggctctccttccc 100235
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 gacaccgaggatcttttcgac 494 ||||||||||||||||||||| Sbjct: 1723200 gacaccgaggatcttttcgac 1723180
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ggcggcggcggctctccttcc 79 ||||||||||||||||||||| Sbjct: 136846 ggcggcggcggctctccttcc 136866
>ref|XM_425484.1| PREDICTED: Gallus gallus similar to bactericidal permeability-increasing protein/lipopolysaccharide-binding protein (LOC427911), mRNA Length = 1665 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tttcactctccagtctgcact 54 ||||||||||||||||||||| Sbjct: 390 tttcactctccagtctgcact 370
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gcggcggcggctctccttccc 80 ||||||||||||||||||||| Sbjct: 147486 gcggcggcggctctccttccc 147466
>gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromosome unknown, complete sequence Length = 224272 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 tttcactctccagtctgcact 54 ||||||||||||||||||||| Sbjct: 146694 tttcactctccagtctgcact 146714
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 cgcggcactgggcgcgctggg 283 ||||||||||||||||||||| Sbjct: 951185 cgcggcactgggcgcgctggg 951165
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tcagggagctgtcctatgaca 477 ||||||||||||||||||||| Sbjct: 23203748 tcagggagctgtcctatgaca 23203728 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tccatggcggcggcggctct 73 |||||||||||||||||||| Sbjct: 12233677 tccatggcggcggcggctct 12233696
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gcggcggcggctctccttccc 80 ||||||||||||||||||||| Sbjct: 24670584 gcggcggcggctctccttccc 24670564 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ggcggcggcggctctccttcc 79 ||||||||||||||||||||| Sbjct: 18557531 ggcggcggcggctctccttcc 18557551
>dbj|AK103886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150C08, full insert sequence Length = 3329 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 tcagggagctgtcctatgaca 477 ||||||||||||||||||||| Sbjct: 597 tcagggagctgtcctatgaca 617
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gcggcggcggctctccttccc 80 ||||||||||||||||||||| Sbjct: 24982254 gcggcggcggctctccttccc 24982234 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ggcggcggcggctctccttcc 79 ||||||||||||||||||||| Sbjct: 18716932 ggcggcggcggctctccttcc 18716952
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tcagggagctgtcctatgaca 477 ||||||||||||||||||||| Sbjct: 23131939 tcagggagctgtcctatgaca 23131919 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tccatggcggcggcggctct 73 |||||||||||||||||||| Sbjct: 12188047 tccatggcggcggcggctct 12188066
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tcagggagctgtcctatgaca 477 ||||||||||||||||||||| Sbjct: 16866 tcagggagctgtcctatgaca 16846
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4310934 ttgttccggtttgagctgttgatg 4310957
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 4290 ctccatggcggcggcggctc 4271
>ref|XM_470197.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 406 ctccatggcggcggcggctc 425
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 1965529 ctccatggcggcggcggctc 1965510
>gb|AC115733.14| Mus musculus chromosome 16, clone RP23-466L17, complete sequence Length = 203973 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 atatccattagctaggtttt 36 |||||||||||||||||||| Sbjct: 71178 atatccattagctaggtttt 71197
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4575271 ttgttccggtttgagctgttgatg 4575294
>emb|Z68285.2|HSN11D4 Human DNA sequence from clone LL22NC03-11D4 on chromosome 22 Contains an EST and GSSs, complete sequence Length = 37219 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 tgtccctggtcagggagctg 467 |||||||||||||||||||| Sbjct: 7486 tgtccctggtcagggagctg 7505
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4298931 ttgttccggtttgagctgttgatg 4298954
>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes Length = 176195 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 166148 ttgttccggtttgagctgttgatg 166171
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ggcactgggcgcgctgggtc 285 |||||||||||||||||||| Sbjct: 696369 ggcactgggcgcgctgggtc 696388
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 9882 ctccatggcggcggcggctc 9901
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 tggcggcggcggctctccttcccc 81 ||||||||||||||| |||||||| Sbjct: 28623 tggcggcggcggctccccttcccc 28600
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 tggcggcggcggctctccttcccc 81 ||||||||||||||| |||||||| Sbjct: 128150 tggcggcggcggctccccttcccc 128127
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4304387 ttgttccggtttgagctgttgatg 4304410
>gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence Length = 202653 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 tgtccctggtcagggagctg 467 |||||||||||||||||||| Sbjct: 130124 tgtccctggtcagggagctg 130143
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 tggcggcggcggctctccttcccc 81 ||||||||||||||| |||||||| Sbjct: 25246483 tggcggcggcggctccccttcccc 25246460
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 1965527 ctccatggcggcggcggctc 1965508
>gb|AC011253.4|AC011253 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR37K05, complete sequence Length = 197597 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 agctcgccgatttgctcgcc 317 |||||||||||||||||||| Sbjct: 124393 agctcgccgatttgctcgcc 124374
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggcggcggctctccttccc 80 |||||||||||||||||||| Sbjct: 34984 cggcggcggctctccttccc 35003
>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0038D11 Length = 156465 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggcggcggctctccttccc 80 |||||||||||||||||||| Sbjct: 133142 cggcggcggctctccttccc 133161
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 3483119 ttgttccggtttgagctgttgatg 3483142
>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete sequence Length = 125394 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctaggttttcactctccagt 47 |||||||||||||||||||| Sbjct: 92978 ctaggttttcactctccagt 92997
>dbj|AK103779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145C17, full insert sequence Length = 1469 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 488 ctccatggcggcggcggctc 507
>dbj|AK060029.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F08, full insert sequence Length = 1382 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctccatggcggcggcggctc 72 |||||||||||||||||||| Sbjct: 426 ctccatggcggcggcggctc 445
>gb|AE003671.4| Drosophila melanogaster chromosome 3R, section 13 of 118 of the complete sequence Length = 315844 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 agctcgccgatttgctcgcc 317 |||||||||||||||||||| Sbjct: 230812 agctcgccgatttgctcgcc 230793
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tccatggcggcggcggctct 73 |||||||||||||||||||| Sbjct: 63640 tccatggcggcggcggctct 63621
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 5183578 ttgttccggtttgagctgttgatg 5183601
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 5153593 ttgttccggtttgagctgttgatg 5153616
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4156722 ttgttccggtttgagctgttgatg 4156745
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ttgttcccgtttgagctgttgatg 182 ||||||| |||||||||||||||| Sbjct: 4526340 ttgttccggtttgagctgttgatg 4526363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,668,766 Number of Sequences: 3902068 Number of extensions: 3668766 Number of successful extensions: 80541 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79368 Number of HSP's gapped (non-prelim): 1173 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
