>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)|
           (Solute carrier family 4 member 3)
          Length = 1227

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 33  PHRLRPPPHNSISQSRRRYKKPRA---PERGWPP 125
           PH+LR PP  S   +RR+ KK +    P  G PP
Sbjct: 92  PHKLRRPPPTSARHTRRKRKKEKTSAPPSEGTPP 125

>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = +3

Query: 48  PPPHNSISQSRRRYKKPRAPERG--------WPPNKAANRAAESRVLESGGRL*NPNPLR 203
           P P  +   S     +P  P RG        +PP +A + AAE+ +   GGR   P P R
Sbjct: 70  PTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPAR 129

Query: 204 IR 209
            R
Sbjct: 130 ER 131

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 6    PTPRTNAGHPHRLRPPPHNSISQSRRRYKKPRAPERGWPP 125
            P+ +  +  P  L PPPH S+ Q  ++   P  P +  PP
Sbjct: 946  PSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPP 985

>Y369_TREPA (O83384) Hypothetical protein TP0369 precursor|
          Length = 516

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 12  PRTNAGHPHRLRPPPHN-SISQSRRRYKKPRAPERGWPPNKAANRA 146
           P   A  PHR  PPP + S S+ ++R   P  P    PP +A  +A
Sbjct: 128 PAPTAPRPHRPSPPPVSPSASKPKQRAVPPSPPPASEPPREAEVQA 173

>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1|
          Length = 4167

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 27   GHPHRLRPPPHNSISQSRRRYKKPRAPERGWPPNK 131
            G P     P   +I+Q    ++K   PE  WP NK
Sbjct: 3418 GDPEMKNLPDTKAITQKEEIHRKKTVPEEAWPNNK 3452

>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4660

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 13   PAPTPAIPTASGRRRTTPSPKAEEDT 90
            P P+P++P  + +R  TP   A EDT
Sbjct: 4621 PPPSPSLPAKASKRNLTPGYTATEDT 4646

>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = +3

Query: 3   CPTPRTNAGHPHRLRPPPHNSISQSRRRYKKP---------RAPERGWPPNKAANRAAES 155
           CP P+ N  +  R  P P    S +    + P         R PER   P+K +    ++
Sbjct: 13  CPRPQRNLPYAARTAPAPAQPPSPAPTPSRTPPVSATPRHRRRPERSKTPDKRSAETTQA 72

Query: 156 RVLESGG 176
           R +E  G
Sbjct: 73  RTVERTG 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,469,250
Number of Sequences: 219361
Number of extensions: 850491
Number of successful extensions: 2521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2512
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)