ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
4ref|NM_191070.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
5dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
7dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
8dbj|AK073886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9ref|NM_196152.1| Oryza sativa (japonica cultivar-group) putative... 46 0.11
10gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 46 0.11
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.11
12gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar N... 46 0.11
13gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 46 0.11
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
17gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
19ref|NM_188588.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
20ref|XM_480321.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
21ref|NM_190428.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
22gb|AY350712.1| Arabidopsis arenosa clone BAC Aer6D24, complete s... 42 1.7
23gb|U58758.2| Caenorhabditis elegans cosmid ZK1127, complete sequ... 42 1.7
24ref|XM_721371.1| Plasmodium yoelii yoelii str. 17XNL coatomer su... 42 1.7
25ref|NM_182179.2| Caenorhabditis elegans ZK1127.9e (ZK1127.9) mRN... 42 1.7
26ref|NM_063043.1| Caenorhabditis elegans ZK1127.9c (ZK1127.9) mRN... 42 1.7
27ref|NM_063041.1| Caenorhabditis elegans ZK1127.9b (ZK1127.9) mRN... 42 1.7
28ref|NM_063042.2| Caenorhabditis elegans ZK1127.9a (ZK1127.9) mRN... 42 1.7
29dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
30dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
31dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
32dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
33dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
34dbj|AK119627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
35dbj|AK065327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
36ref|XM_480334.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
37gb|DQ213251.1| Taeniopygia guttata clone 0061P0009F01 RIKEN cDNA... 40 6.6
38gb|AY101596.1| Suid herpesvirus 1 UL54 gene, complete cds 40 6.6
39gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.6
40dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.6
41ref|XM_939095.1| PREDICTED: Homo sapiens similar to CG1530-PA (L... 40 6.6
42ref|XM_926951.1| PREDICTED: Homo sapiens similar to CG1530-PA (L... 40 6.6
43dbj|AK080445.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 6.6
44gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, compl... 40 6.6
45gb|AF310621.1|AF310621 Pseudorabies virus Ea early regulation pr... 40 6.6
46gb|AC009967.8| Homo sapiens BAC clone RP11-401O19 from 2, comple... 40 6.6
47dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
48dbj|AK110978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
49dbj|AK103236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
50emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence 40 6.6
51gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.6
52emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on ch... 40 6.6
53dbj|AB047689.2| Oryza sativa mRNA for PolI-like DNA polymerase, ... 40 6.6 
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0041L19, complete sequence
          Length = 155086

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                          
Query: 317    acagaaagagactatcttcttcaaatgactccccaatgttggggacctcagtctccagat 376
              ||||||||||| ||||||||||||||| ||| ||| ||||||| ||  | ||||||| ||
Sbjct: 150357 acagaaagagattatcttcttcaaatgcctctccactgttgggtactgcggtctccaaat 150416

                                                                          
Query: 377    tctcagaagcaaggtcgttgcatgatggaagcagcatacctaggcggcccaatgctggtc 436
              | ||||||||||||  |||   |||||||| ||||||||  |||||||||||||||||||
Sbjct: 150417 tttcagaagcaaggctgttctgtgatggaaacagcatacagaggcggcccaatgctggtc 150476

                                                 
Query: 437    tactacttgaagacgtcaagcaggaggctgctgat 471
              |||| ||||||||  ||||||||||||||||||||
Sbjct: 150477 tactccttgaagatatcaagcaggaggctgctgat 150511



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 270    ctacttcgacccggactcctcccgcctccgcgaggagtaccgccgctacag 320
              ||||||||||||||| || ||| ||| ||| ||||||||||||||||||||
Sbjct: 149559 ctacttcgacccggagtcgtccggccgccgggaggagtaccgccgctacag 149609
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                            
Query: 317      acagaaagagactatcttcttcaaatgactccccaatgttggggacctcagtctccagat 376
                ||||||||||| ||||||||||||||| ||| ||| ||||||| ||  | ||||||| ||
Sbjct: 24673455 acagaaagagattatcttcttcaaatgcctctccactgttgggtactgcggtctccaaat 24673514

                                                                            
Query: 377      tctcagaagcaaggtcgttgcatgatggaagcagcatacctaggcggcccaatgctggtc 436
                | ||||||||||||  |||   |||||||| ||||||||  |||||||||||||||||||
Sbjct: 24673515 tttcagaagcaaggctgttctgtgatggaaacagcatacagaggcggcccaatgctggtc 24673574

                                                   
Query: 437      tactacttgaagacgtcaagcaggaggctgctgat 471
                |||| ||||||||  ||||||||||||||||||||
Sbjct: 24673575 tactccttgaagatatcaagcaggaggctgctgat 24673609



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 270      ctacttcgacccggactcctcccgcctccgcgaggagtaccgccgctacag 320
                ||||||||||||||| || ||| ||| ||| ||||||||||||||||||||
Sbjct: 24672657 ctacttcgacccggagtcgtccggccgccgggaggagtaccgccgctacag 24672707
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                            
Query: 317      acagaaagagactatcttcttcaaatgactccccaatgttggggacctcagtctccagat 376
                ||||||||||| ||||||||||||||| ||| ||| ||||||| ||  | ||||||| ||
Sbjct: 24985125 acagaaagagattatcttcttcaaatgcctctccactgttgggtactgcggtctccaaat 24985184

                                                                            
Query: 377      tctcagaagcaaggtcgttgcatgatggaagcagcatacctaggcggcccaatgctggtc 436
                | ||||||||||||  |||   |||||||| ||||||||  |||||||||||||||||||
Sbjct: 24985185 tttcagaagcaaggctgttctgtgatggaaacagcatacagaggcggcccaatgctggtc 24985244

                                                   
Query: 437      tactacttgaagacgtcaagcaggaggctgctgat 471
                |||| ||||||||  ||||||||||||||||||||
Sbjct: 24985245 tactccttgaagatatcaagcaggaggctgctgat 24985279



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 270      ctacttcgacccggactcctcccgcctccgcgaggagtaccgccgctacag 320
                ||||||||||||||| || ||| ||| ||| ||||||||||||||||||||
Sbjct: 24984327 ctacttcgacccggagtcgtccggccgccgggaggagtaccgccgctacag 24984377
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>ref|NM_191070.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1626

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 10 ctccccgcaccaacgccggccatccccaccgcc 42
          |||||||| ||||||||||||| ||||||||||
Sbjct: 17 ctccccgccccaacgccggccaaccccaccgcc 49
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>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432B10
          Length = 131918

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 10     ctccccgcaccaacgccggccatccccaccgcc 42
              |||||||| ||||||||||||| ||||||||||
Sbjct: 110840 ctccccgccccaacgccggccaaccccaccgcc 110872
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 10       ctccccgcaccaacgccggccatccccaccgcc 42
                |||||||| ||||||||||||| ||||||||||
Sbjct: 34613546 ctccccgccccaacgccggccaaccccaccgcc 34613578



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 96       ccgcgggcgccggagcgaggc 116
                |||||||||||||||||||||
Sbjct: 35470912 ccgcgggcgccggagcgaggc 35470932



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      accgcctccggccgccgccgc 57
               |||||||||||||||||||||
Sbjct: 7096000 accgcctccggccgccgccgc 7096020
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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 10    ctccccgcaccaacgccggccatccccaccgcc 42
             |||||||| ||||||||||||| ||||||||||
Sbjct: 65563 ctccccgccccaacgccggccaaccccaccgcc 65595
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>dbj|AK073886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075O06,
          full insert sequence
          Length = 1895

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 10 ctccccgcaccaacgccggccatccccaccgcc 42
          |||||||| ||||||||||||| ||||||||||
Sbjct: 56 ctccccgccccaacgccggccaaccccaccgcc 88
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>ref|NM_196152.1| Oryza sativa (japonica cultivar-group) putative hydrolase
          (OSJNBa0091J06.21), mRNA
          Length = 1206

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 35 ccaccgcctccggccgccgccgc 57
          |||||||||||||||||||||||
Sbjct: 69 ccaccgcctccggccgccgccgc 47
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 35    ccaccgcctccggccgccgccgc 57
             |||||||||||||||||||||||
Sbjct: 92283 ccaccgcctccggccgccgccgc 92261
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 35       ccaccgcctccggccgccgccgc 57
                |||||||||||||||||||||||
Sbjct: 32787258 ccaccgcctccggccgccgccgc 32787280
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>gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
              OSJNBa0091J06 from chromosome 10, complete sequence
          Length = 141911

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 35     ccaccgcctccggccgccgccgc 57
              |||||||||||||||||||||||
Sbjct: 124679 ccaccgcctccggccgccgccgc 124657
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>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBa0095C06, from Chromosome 10,
             complete sequence
          Length = 156159

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 35    ccaccgcctccggccgccgccgc 57
             |||||||||||||||||||||||
Sbjct: 15601 ccaccgcctccggccgccgccgc 15579
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 35       ccaccgcctccggccgccgccgc 57
                |||||||||||||||||||||||
Sbjct: 11431608 ccaccgcctccggccgccgccgc 11431586
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 35       ccaccgcctccggccgccgccgc 57
                |||||||||||||||||||||||
Sbjct: 32877768 ccaccgcctccggccgccgccgc 32877790
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 35       ccaccgcctccggccgccgccgc 57
                |||||||||||||||||||||||
Sbjct: 11438048 ccaccgcctccggccgccgccgc 11438026
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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0115F21, complete sequence
          Length = 128493

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    ccaccgcctccggccgccgccg 56
             ||||||||||||||||||||||
Sbjct: 84681 ccaccgcctccggccgccgccg 84702
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 35      ccaccgcctccggccgccgccg 56
               ||||||||||||||||||||||
Sbjct: 6522019 ccaccgcctccggccgccgccg 6522040
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>ref|NM_188588.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 966

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  accgcctccggccgccgccgc 57
           |||||||||||||||||||||
Sbjct: 286 accgcctccggccgccgccgc 266
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>ref|XM_480321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 29  ccatccccaccgcctccggccgccgccgc 57
           |||||||||||||| ||| ||||||||||
Sbjct: 218 ccatccccaccgccgccgtccgccgccgc 190
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>ref|NM_190428.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 999

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccgcgggcgccggagcgaggc 116
           |||||||||||||||||||||
Sbjct: 225 ccgcgggcgccggagcgaggc 245
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>gb|AY350712.1| Arabidopsis arenosa clone BAC Aer6D24, complete sequence
          Length = 87863

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    caaagcagaagaagatacaaa 92
             |||||||||||||||||||||
Sbjct: 13923 caaagcagaagaagatacaaa 13903
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>gb|U58758.2| Caenorhabditis elegans cosmid ZK1127, complete sequence
          Length = 35962

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 62    ctccatctcccaaagcagaagaaga 86
             |||||||||| ||||||||||||||
Sbjct: 13700 ctccatctccaaaagcagaagaaga 13676
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>ref|XM_721371.1| Plasmodium yoelii yoelii str. 17XNL coatomer subunit gamma
           (PY00718) partial mRNA
          Length = 2988

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 73  aaagcagaagaagatacaaaa 93
           |||||||||||||||||||||
Sbjct: 515 aaagcagaagaagatacaaaa 495
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>ref|NM_182179.2| Caenorhabditis elegans ZK1127.9e (ZK1127.9) mRNA, complete cds
          Length = 2450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 62   ctccatctcccaaagcagaagaaga 86
            |||||||||| ||||||||||||||
Sbjct: 1144 ctccatctccaaaagcagaagaaga 1168
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>ref|NM_063043.1| Caenorhabditis elegans ZK1127.9c (ZK1127.9) mRNA, complete cds
          Length = 2082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 62  ctccatctcccaaagcagaagaaga 86
           |||||||||| ||||||||||||||
Sbjct: 509 ctccatctccaaaagcagaagaaga 533
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>ref|NM_063041.1| Caenorhabditis elegans ZK1127.9b (ZK1127.9) mRNA, complete cds
          Length = 2718

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 62   ctccatctcccaaagcagaagaaga 86
            |||||||||| ||||||||||||||
Sbjct: 1145 ctccatctccaaaagcagaagaaga 1169
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>ref|NM_063042.2| Caenorhabditis elegans ZK1127.9a (ZK1127.9) mRNA, complete cds
          Length = 2747

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 62   ctccatctcccaaagcagaagaaga 86
            |||||||||| ||||||||||||||
Sbjct: 1174 ctccatctccaaaagcagaagaaga 1198
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 29      ccatccccaccgcctccggccgccgccgc 57
               |||||||||||||| ||| ||||||||||
Sbjct: 4311984 ccatccccaccgccgccgtccgccgccgc 4312012



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      ccgcctccggccgccgccgc 57
               ||||||||||||||||||||
Sbjct: 4410744 ccgcctccggccgccgccgc 4410725



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      ccgcctccggccgccgccgc 57
               ||||||||||||||||||||
Sbjct: 4394357 ccgcctccggccgccgccgc 4394338
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>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0446G04
          Length = 143515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   ccgcgggcgccggagcgaggc 116
            |||||||||||||||||||||
Sbjct: 1099 ccgcgggcgccggagcgaggc 1119
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    accgcctccggccgccgccgc 57
             |||||||||||||||||||||
Sbjct: 83580 accgcctccggccgccgccgc 83600
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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0054L03
          Length = 183623

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 29    ccatccccaccgcctccggccgccgccgc 57
             |||||||||||||| ||| ||||||||||
Sbjct: 74778 ccatccccaccgccgccgtccgccgccgc 74806



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ccgcctccggccgccgccgc 57
              ||||||||||||||||||||
Sbjct: 173538 ccgcctccggccgccgccgc 173519



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ccgcctccggccgccgccgc 57
              ||||||||||||||||||||
Sbjct: 157151 ccgcctccggccgccgccgc 157132
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088C09
          Length = 154084

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    ccgcgggcgccggagcgaggc 116
             |||||||||||||||||||||
Sbjct: 94861 ccgcgggcgccggagcgaggc 94881
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>dbj|AK119627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E07, full
           insert sequence
          Length = 1159

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  accgcctccggccgccgccgc 57
           |||||||||||||||||||||
Sbjct: 390 accgcctccggccgccgccgc 370
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>dbj|AK065327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F09, full
           insert sequence
          Length = 1387

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccgcgggcgccggagcgaggc 116
           |||||||||||||||||||||
Sbjct: 236 ccgcgggcgccggagcgaggc 256
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>ref|XM_480334.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3777

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 38 ccgcctccggccgccgccgc 57
          ||||||||||||||||||||
Sbjct: 58 ccgcctccggccgccgccgc 77
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>gb|DQ213251.1| Taeniopygia guttata clone 0061P0009F01 RIKEN cDNA 2010008E23-like
          mRNA, complete sequence
          Length = 1382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                          
Query: 27 ggccatcccc-accgcctccggccgccgccgc 57
          |||||||||| ||||||||| |||||||||||
Sbjct: 45 ggccatccccgaccgcctcccgccgccgccgc 14
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>gb|AY101596.1| Suid herpesvirus 1 UL54 gene, complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ccgcctccggccgccgccgc 57
           ||||||||||||||||||||
Sbjct: 256 ccgcctccggccgccgccgc 237
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    cgccaatgtcgacgccgggc 270
              ||||||||||||||||||||
Sbjct: 232010 cgccaatgtcgacgccgggc 232029
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 115     gctggccgccgaacaaggctgcga 138
               ||||||||||| ||||||||||||
Sbjct: 2536461 gctggccgccgcacaaggctgcga 2536484
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>ref|XM_939095.1| PREDICTED: Homo sapiens similar to CG1530-PA (LOC650007), mRNA
          Length = 2565

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ccgcctccggccgccgccgc 57
           ||||||||||||||||||||
Sbjct: 239 ccgcctccggccgccgccgc 220
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>ref|XM_926951.1| PREDICTED: Homo sapiens similar to CG1530-PA (LOC643647), mRNA
          Length = 2565

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ccgcctccggccgccgccgc 57
           ||||||||||||||||||||
Sbjct: 239 ccgcctccggccgccgccgc 220
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>dbj|AK080445.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730014L24
           product:unclassifiable, full insert sequence
          Length = 1079

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 ctggagagcggagggcggct 181
           ||||||||||||||||||||
Sbjct: 692 ctggagagcggagggcggct 711
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>gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, complete sequence
          Length = 181706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    ctccccaatgttggggacct 364
              ||||||||||||||||||||
Sbjct: 113963 ctccccaatgttggggacct 113982
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>gb|AF310621.1|AF310621 Pseudorabies virus Ea early regulation protein UL54 gene, complete
           cds
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ccgcctccggccgccgccgc 57
           ||||||||||||||||||||
Sbjct: 250 ccgcctccggccgccgccgc 231
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>gb|AC009967.8| Homo sapiens BAC clone RP11-401O19 from 2, complete sequence
          Length = 176206

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ccgcctccggccgccgccgc 57
              ||||||||||||||||||||
Sbjct: 125927 ccgcctccggccgccgccgc 125908
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>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ccgcctccggccgccgccgc 57
             ||||||||||||||||||||
Sbjct: 57920 ccgcctccggccgccgccgc 57901



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ccgcctccggccgccgccgc 57
             ||||||||||||||||||||
Sbjct: 41533 ccgcctccggccgccgccgc 41514
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>dbj|AK110978.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C06, full
           insert sequence
          Length = 2033

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ccgcctccggccgccgccgc 57
           ||||||||||||||||||||
Sbjct: 160 ccgcctccggccgccgccgc 179
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>dbj|AK103236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F03,
          full insert sequence
          Length = 3777

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 38 ccgcctccggccgccgccgc 57
          ||||||||||||||||||||
Sbjct: 58 ccgcctccggccgccgccgc 77
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>emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence
          Length = 157345

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   cccgtcgccgtcccctccgc 253
             ||||||||||||||||||||
Sbjct: 46362 cccgtcgccgtcccctccgc 46343
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 115     gctggccgccgaacaaggctgcga 138
               ||||||||||| ||||||||||||
Sbjct: 2558317 gctggccgccgcacaaggctgcga 2558340
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>emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on chromosome 4, complete
              sequence
          Length = 227816

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ctggagagcggagggcggct 181
              ||||||||||||||||||||
Sbjct: 213395 ctggagagcggagggcggct 213414
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>dbj|AB047689.2| Oryza sativa mRNA for PolI-like DNA polymerase, complete cds
          Length = 3765

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 38 ccgcctccggccgccgccgc 57
          ||||||||||||||||||||
Sbjct: 42 ccgcctccggccgccgccgc 61


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,186,787
Number of Sequences: 3902068
Number of extensions: 4186787
Number of successful extensions: 86848
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85643
Number of HSP's gapped (non-prelim): 1203
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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